Properties
| Property Name | Value |
|---|
| TranscriptId | 556690 |
| Track | FilteredModels2 |
| ProteinId | 556604 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:569740..571208 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5500 ID=mRNA_5500|Name=jgi.p|Nanoce1779_2|556604|organism=Nannochloropsis oceanica|type=mRNA|length=1469bp
ATCGGTTCCACGGTCTCAGCCACGTCGTCCCCGTCAAAAGCCCCAAACAG
GTCGTTCAAATCGCCATCATCCATGCTTACCTCTGTGTGGTTGTGTGTAG
GGGGTAAGGTGTGGACAGACGGATGGTAAGGGGCAGGGCAACGTCTTTGG
GTGGGGAGGTCGGGAGGGGACAGCATATCAAAAAAGCCCTCCCGAGGGTG
CACTCCACAGAAATAAGAAATAAGTCGAATTAAGTCACTGCGACTTTAAT
GCTATTGACGCACGATTTTTTCCACACCCCCTTCTACTCTTTGTGATGCT
ACTGATGCGAGGATAGGGACCACCTCCAGCGAATGGATGAGGACTCGGGG
AATATACTAGTCCCGCCTAGTCCCGCCACGGTCGTGATCTGACTCTTTGT
GAATGGGAAAGGAGTAAGAACCCATTCCCCTCATACAGGCACCAAGATGA
CTTGCGTACAACCCTGTTTAACAATCCTGAAGCCTGCCCTGGTCTCCTTT
CTAACTGCTTGTCTCCCCTCAACCTACACAGCATCGCTTAGTCAGGCTAG
GTCGAAGCCCGCGTGCCCCACCTCAAGCCCCCTACATCTTATCATGACGG
CCAGACATGCGGCGCTCAACGCCGCCCTGATCCTCGTCTCTTCCCTGTTG
CTCGCAAGCACACATGCGTTCCTTCTGCCTTCGCCCGCTTCCAGCCAGGC
CATCGGCATCACTAGTAGCATTAGAAGACCTGTCGCGACCCGTACAGCTG
TCACGGAACGGGAACAACAACAAGAGCGTAAGGGCATCTCGGAAGATGAT
CCAATGGTGCAACGTATCCGCGACGAGGTCTTGCGTGAGACGGGCGTGGA
GCTCGACCAGCTTCTAAACCCTTCAAAGGTCGTTAATCTGGAGTTTGATT
TGATCAATTTGCGGAACGAGCGCGATACCACCGACGACAACAAGGCCCTC
GCGACGCTCGAAAAGCAAATCCAGAAGAAGGAGACACAACTTGCCACAGA
AAAACGACTGGTTATGCGTGGGTGGTTGAAAAATCTGTTCTTGGGGCAGT
CCCTGGGAGCTGTCGCCTTGTCAGGAGTGGTAGTATATGATGCACTGCCG
GGATTCGACCACTTACCGTTACCCGTCCGAGCGTTCGCGTTTTGGAGCTT
CTGGATGTTTACCATTCCGTCATTAAGAGCACGAAAGCCGGGACAGACTG
AGAAGAAGGCTTTAGATGTGGCGTTTTTGCTAACCCCGATCGTGAGCTTG
GGGATGCCTTTCCTAACGAAGGACATGCCCACCATCTGGTGGGCCAATGC
AGTGGCCACTGGAGCGAGTTATGGATACGCGTACGTGTTTCAAGGCAAGG
GTGTGGGGGAGGAGGGGATGGAGGGAGAGGAGGAGGACGAGACGTTGCCG
GCGCCGTTGAAGGCGGCCCTGAAGGCGTTGGATTGGGGGTCGGGGCGGGA
GAGGGGAGTGAGGAAGTAG back to topprotein sequence of jgi.p|Nanoce1779_2|556604 >mRNA_5500-protein ID=mRNA_5500-protein|Name=jgi.p|Nanoce1779_2|556604|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MTCVQPCLTILKPALVSFLTACLPSTYTASLSQARSKPACPTSSPLHLIM
TARHAALNAALILVSSLLLASTHAFLLPSPASSQAIGITSSIRRPVATRT
AVTEREQQQERKGISEDDPMVQRIRDEVLRETGVELDQLLNPSKVVNLEF
DLINLRNERDTTDDNKALATLEKQIQKKETQLATEKRLVMRGWLKNLFLG
QSLGAVALSGVVVYDALPGFDHLPLPVRAFAFWSFWMFTIPSLRARKPGQ
TEKKALDVAFLLTPIVSLGMPFLTKDMPTIWWANAVATGASYGYAYVFQG
KGVGEEGMEGEEEDETLPAPLKAALKALDWGSGRERGVRK* back to topmRNA from alignment at scaffold_13:569740..571208- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5500 ID=mRNA_5500|Name=jgi.p|Nanoce1779_2|556604|organism=Nannochloropsis oceanica|type=mRNA|length=1469bp|location=Sequence derived from alignment at scaffold_13:569740..571208- (Nannochloropsis oceanica)
ATCGGTTCCACGGTCTCAGCCACGTCGTCCCCGTCAAAAGCCCCAAACAG
GTCGTTCAAATCGCCATCATCCATGCTTACCTCTGTGTGGTTGTGTGTAG
GGGGTAAGGTGTGGACAGACGGATGGTAAGGGGCAGGGCAACGTCTTTGG
GTGGGGAGGTCGGGAGGGGACAGCATATCAAAAAAGCCCTCCCGAGGGTG
CACTCCACAGAAATAAGAAATAAGTCGAATTAAGTCACTGCGACTTTAAT
GCTATTGACGCACGATTTTTTCCACACCCCCTTCTACTCTTTGTGATGCT
ACTGATGCGAGGATAGGGACCACCTCCAGCGAATGGATGAGGACTCGGGG
AATATACTAGTCCCGCCTAGTCCCGCCACGGTCGTGATCTGACTCTTTGT
GAATGGGAAAGGAGTAAGAACCCATTCCCCTCATACAGGCACCAAGATGA
CTTGCGTACAACCCTGTTTAACAATCCTGAAGCCTGCCCTGGTCTCCTTT
CTAACTGCTTGTCTCCCCTCAACCTACACAGCATCGCTTAGTCAGGCTAG
GTCGAAGCCCGCGTGCCCCACCTCAAGCCCCCTACATCTTATCATGACGG
CCAGACATGCGGCGCTCAACGCCGCCCTGATCCTCGTCTCTTCCCTGTTG
CTCGCAAGCACACATGCGTTCCTTCTGCCTTCGCCCGCTTCCAGCCAGGC
CATCGGCATCACTAGTAGCATTAGAAGACCTGTCGCGACCCGTACAGCTG
TCACGGAACGGGAACAACAACAAGAGCGTAAGGGCATCTCGGAAGATGAT
CCAATGGTGCAACGTATCCGCGACGAGGTCTTGCGTGAGACGGGCGTGGA
GCTCGACCAGCTTCTAAACCCTTCAAAGGTCGTTAATCTGGAGTTTGATT
TGATCAATTTGCGGAACGAGCGCGATACCACCGACGACAACAAGGCCCTC
GCGACGCTCGAAAAGCAAATCCAGAAGAAGGAGACACAACTTGCCACAGA
AAAACGACTGGTTATGCGTGGGTGGTTGAAAAATCTGTTCTTGGGGCAGT
CCCTGGGAGCTGTCGCCTTGTCAGGAGTGGTAGTATATGATGCACTGCCG
GGATTCGACCACTTACCGTTACCCGTCCGAGCGTTCGCGTTTTGGAGCTT
CTGGATGTTTACCATTCCGTCATTAAGAGCACGAAAGCCGGGACAGACTG
AGAAGAAGGCTTTAGATGTGGCGTTTTTGCTAACCCCGATCGTGAGCTTG
GGGATGCCTTTCCTAACGAAGGACATGCCCACCATCTGGTGGGCCAATGC
AGTGGCCACTGGAGCGAGTTATGGATACGCGTACGTGTTTCAAGGCAAGG
GTGTGGGGGAGGAGGGGATGGAGGGAGAGGAGGAGGACGAGACGTTGCCG
GCGCCGTTGAAGGCGGCCCTGAAGGCGTTGGATTGGGGGTCGGGGCGGGA
GAGGGGAGTGAGGAAGTAG back to topCoding sequence (CDS) from alignment at scaffold_13:569740..571208- >mRNA_5500 ID=mRNA_5500|Name=jgi.p|Nanoce1779_2|556604|organism=Nannochloropsis oceanica|type=CDS|length=1023bp|location=Sequence derived from alignment at scaffold_13:569740..571208- (Nannochloropsis oceanica)
ATGACTTGCGTACAACCCTGTTTAACAATCCTGAAGCCTGCCCTGGTCTC
CTTTCTAACTGCTTGTCTCCCCTCAACCTACACAGCATCGCTTAGTCAGG
CTAGGTCGAAGCCCGCGTGCCCCACCTCAAGCCCCCTACATCTTATCATG
ACGGCCAGACATGCGGCGCTCAACGCCGCCCTGATCCTCGTCTCTTCCCT
GTTGCTCGCAAGCACACATGCGTTCCTTCTGCCTTCGCCCGCTTCCAGCC
AGGCCATCGGCATCACTAGTAGCATTAGAAGACCTGTCGCGACCCGTACA
GCTGTCACGGAACGGGAACAACAACAAGAGCGTAAGGGCATCTCGGAAGA
TGATCCAATGGTGCAACGTATCCGCGACGAGGTCTTGCGTGAGACGGGCG
TGGAGCTCGACCAGCTTCTAAACCCTTCAAAGGTCGTTAATCTGGAGTTT
GATTTGATCAATTTGCGGAACGAGCGCGATACCACCGACGACAACAAGGC
CCTCGCGACGCTCGAAAAGCAAATCCAGAAGAAGGAGACACAACTTGCCA
CAGAAAAACGACTGGTTATGCGTGGGTGGTTGAAAAATCTGTTCTTGGGG
CAGTCCCTGGGAGCTGTCGCCTTGTCAGGAGTGGTAGTATATGATGCACT
GCCGGGATTCGACCACTTACCGTTACCCGTCCGAGCGTTCGCGTTTTGGA
GCTTCTGGATGTTTACCATTCCGTCATTAAGAGCACGAAAGCCGGGACAG
ACTGAGAAGAAGGCTTTAGATGTGGCGTTTTTGCTAACCCCGATCGTGAG
CTTGGGGATGCCTTTCCTAACGAAGGACATGCCCACCATCTGGTGGGCCA
ATGCAGTGGCCACTGGAGCGAGTTATGGATACGCGTACGTGTTTCAAGGC
AAGGGTGTGGGGGAGGAGGGGATGGAGGGAGAGGAGGAGGACGAGACGTT
GCCGGCGCCGTTGAAGGCGGCCCTGAAGGCGTTGGATTGGGGGTCGGGGC
GGGAGAGGGGAGTGAGGAAGTAG back to top
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