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Properties
| Property Name | Value |
|---|
| TranscriptId | 628068 |
| Track | FilteredModels2 |
| ProteinId | 627982 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:1330293..1332591 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_550 ID=mRNA_550|Name=jgi.p|Nanoce1779_2|627982|organism=Nannochloropsis oceanica|type=mRNA|length=1922bp
AATCGCTAGAGCCCTGACAAATATTTTACTTTGATTTTAAAGGAGATAGA
CCCACAAATTGTCATGCCTCGCCTAGATATTGCTGTCATTGGCTCTGGCC
CCTGTGCTCTCGCGTTCGTGAGTCGCTTGGCCGCGCCACCTGGTGCCATC
GACTTTTCAGCCGACTTCCTTTACGGTTTTGACTCAGAGACCGAATCACT
GCAGACCACCATCGGCCGCCTCAATGCCCTCAAGAAAAGCATGAGCACAT
CCAGCAACGATCATCCCCTCCAGGGTCGTGTCAAAGTCTTTGAGAAGAGC
GGCGCATGGTTGGGGAAGTGGGATGGCTTGTTTGACGCCTTGGGAATTCA
GCACCTCCGCTCTCCCCACGTGGCCCACCCTTGCCCGACCCACACGCACG
CCATCCTTGCACTTGCAGAGATGACCAAGACGGTACCAGGAAGTAAATGT
GAGCGGGAGATCTTCGCAGATTTTAAGCACCTGCGATATAGTGGTTGCCA
CCGTGCTCCTTCGGTGCGACTCTTTCGCTCCCTGTGTTCGCACCTGTGCA
AATCCTTGGGCCTCGACTCTCTGCTTGAAGAAGCCACTGTTCTTGCCATC
GAGCCAGTCTACAAGGACGAGAAGACCGGCCAAGCCGTGAGCCACTTTCG
AGTGACGCTGTGCCGCGGCCGCGAGGCACAAGGACTGGTGGAAGTCATCG
AAGCCACGTCTGTAGTGGTAGCTACGGGAAGCACGAGCTGCCCCCGCCTT
CCCGAGTGGTGGCCCTCCGGCCCGGATGCCATGGACTGCCCCTCCGATCA
TTCCCCACACGCTCTGCGTCATGCTTGGGAGCTGCCGCAAGATTTGTGCC
TTTCATCTCCTGCGCCTGCTCCTCTGCAATCCCACGAACGCATCCTGATT
GTCGGAGGAGGGTTAACGGCAGTGCAGCTTGCCGTGTTGGCCGTCGATCA
GGGTCAAGCTCACGCCACCTTAGCTTCTCGTCGCGCCCTGGTCGTCAAGC
AATTCGACTTTGCCAATGCCTGGATGGACCGCAAACACCGTCCAAGCCTT
CTTCGAACATTTCTCCAAGCCGATAATGATACCGACCGACTGGCGCTCAT
CCAGGCGGCTCGAGGTCTGTCTTCCATTCCGCCTGAGGCCTTGGACATGC
TACGCGCACGTGAGGGCAGCATCGACCTGCGTGAAGCCACGGAGATCACG
TCTTTCCCGCCGCCGCGGTGGGATTCCCATTTAAAGATGTGGAGAGTTGT
TCTCGAGCGTCATATTGGAACGCCCGCGGTGATGAAAGGCAGGATCACAT
CCCGGGAAGAGCACTTCTTCGATCGCATCTGGTGCGCCACGGGCAGCGAC
GTATGCTTGGAAAAGCATCCATTGCTGGGCGGCTTCGTTGATCAACGACC
CATCGATACTTGCAATGGATTCCCTTGTCTGACACCGGACCTGGCTTGGG
ATCAGGATTGTGAACTGTACGTTTTGGGTGCTCCTGCGGCCTTGCGTCTC
GGCCCTGACGCCTTCAACCTCTTGGGGGCGCGCACAGGCGCGGCGCGGGT
CGCCCACGTCCTCCATAAGCGCCTCCAAATAGGGGAGGAGACTACCATCA
TGAAAAGTATCCGGCAGGCAAAGCAGGAAGTGGCGGCTTTGGGTTTCAAG
TACGACCGCAAACGCGAGGCGGTCCGGAGCGCCGGGCTTGCGCGGCAGGA
GGAGACAGGAGTGGGGATGCAGAAGAGGTCAAAGAGGGGTGTGTGTGCAA
GGAAAGGCAAGCCGCGACGAGGTTGTTGCTGAGCTGTGAGCAATAAGGTC
GAATGTAAAGTGTGGACTATTTATGACTCAAAAACAATAGTGCTGGCGGA
GAGTGCCTTCCAAAACCTCCGGCCCATTTTTCAAAAAGTAATTCTATCGG
GGACTTTGCACCAGAAACTTGG back to topprotein sequence of jgi.p|Nanoce1779_2|627982 >mRNA_550-protein ID=mRNA_550-protein|Name=jgi.p|Nanoce1779_2|627982|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MPRLDIAVIGSGPCALAFVSRLAAPPGAIDFSADFLYGFDSETESLQTTI
GRLNALKKSMSTSSNDHPLQGRVKVFEKSGAWLGKWDGLFDALGIQHLRS
PHVAHPCPTHTHAILALAEMTKTVPGSKCEREIFADFKHLRYSGCHRAPS
VRLFRSLCSHLCKSLGLDSLLEEATVLAIEPVYKDEKTGQAVSHFRVTLC
RGREAQGLVEVIEATSVVVATGSTSCPRLPEWWPSGPDAMDCPSDHSPHA
LRHAWELPQDLCLSSPAPAPLQSHERILIVGGGLTAVQLAVLAVDQGQAH
ATLASRRALVVKQFDFANAWMDRKHRPSLLRTFLQADNDTDRLALIQAAR
GLSSIPPEALDMLRAREGSIDLREATEITSFPPPRWDSHLKMWRVVLERH
IGTPAVMKGRITSREEHFFDRIWCATGSDVCLEKHPLLGGFVDQRPIDTC
NGFPCLTPDLAWDQDCELYVLGAPAALRLGPDAFNLLGARTGAARVAHVL
HKRLQIGEETTIMKSIRQAKQEVAALGFKYDRKREAVRSAGLARQEETGV
GMQKRSKRGVCARKGKPRRGCC* back to topmRNA from alignment at scaffold_3:1330293..1332591- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_550 ID=mRNA_550|Name=jgi.p|Nanoce1779_2|627982|organism=Nannochloropsis oceanica|type=mRNA|length=2299bp|location=Sequence derived from alignment at scaffold_3:1330293..1332591- (Nannochloropsis oceanica)
AATCGCTAGGTAAATGCGGCCACCACTGTAAAAGTCATAATTAATTCCCT
CGAGGGCAAGAGGAGATATCGTTCGTCCTTGTCTTGTCTTGCCTTTTTAT
CACACACGCTACATTACCTCCCCTCCCCTCCCTCCTCTTCTACGCACCAT
CGCCACGCACAGAGCCCTGACAAATATTTTACTTTGATTTTAAAGGAGAT
AGACCCACAAATTGTCATGCCTCGCCTAGATATTGCTGTCATTGGCTCTG
GCCCCTGTGCTCTCGCGTTCGTGAGTCGCTTGGCCGCGCCACCTGGTGCC
ATCGACTTTTCAGCCGACTTCCTTTACGGTTTTGACTCAGAGACCGAATC
ACTGCAGACCACCATCGGCCGCCTCAATGCCCTCAAGAAAAGCATGAGCA
CATCCAGCAACGATCATCCCCTCCAGGGTCGTGTCAAAGTCTTTGAGAAG
AGCGGCGCATGGTTGGGGAAGTGGGATGGCTTGTTTGACGCCTTGGGAAT
TCAGCACCTCCGCTCTCCCCACGTGGCCCACCCTTGCCCGACCCACACGC
ACGCCATCCTTGCACTTGCAGAGATGACCAAGACGGTACCAGGAAGTAAA
TGTGAGCGGGAGATCTTCGCAGATTTTAAGCACCTGCGATATAGTGGTTG
CCACCGTGCTCCTTCGGTGCGACTCTTTCGCTCCCTGTGTTCGCACCTGT
GCAAATCCTTGGGCCTCGACTCTCTGCTTGAAGAAGGTATGGAACAAATT
GAACAGATTTTGACTTGGTTTCATTAATGTTCGACCTCATTTACATATTG
ATTATTTCTTCCCCCAAAGCCACTGTTCTTGCCATCGAGCCAGTCTACAA
GGACGAGAAGACCGGCCAAGCCGTGAGCCACTTTCGAGTGACGCTGTGCC
GCGGCCGCGAGGCACAAGGACTGGTGGAAGTCATCGAAGCCACGTAAGTA
TGTGTCGGTGTGATAGAGATAAAAAGACGTGCACCGGGGAAAAGAGGCCG
GGACCCTCCCTCCCTCCCTCATTCCTTCCCCTTGCCCCAAACCTAACAAA
CCTTACACAATCTTTTCTTTCTTCATGATTGCAGGTCTGTAGTGGTAGCT
ACGGGAAGCACGAGCTGCCCCCGCCTTCCCGAGTGGTGGCCCTCCGGCCC
GGATGCCATGGACTGCCCCTCCGATCATTCCCCACACGCTCTGCGTCATG
CTTGGGAGCTGCCGCAAGATTTGTGCCTTTCATCTCCTGCGCCTGCTCCT
CTGCAATCCCACGAACGCATCCTGATTGTCGGAGGAGGGTTAACGGCAGT
GCAGCTTGCCGTGTTGGCCGTCGATCAGGGTCAAGCTCACGCCACCTTAG
CTTCTCGTCGCGCCCTGGTCGTCAAGCAATTCGACTTTGCCAATGCCTGG
ATGGACCGCAAACACCGTCCAAGCCTTCTTCGAACATTTCTCCAAGCCGA
TAATGATACCGACCGACTGGCGCTCATCCAGGCGGCTCGAGGTCTGTCTT
CCATTCCGCCTGAGGCCTTGGACATGCTACGCGCACGTGAGGGCAGCATC
GACCTGCGTGAAGCCACGGAGATCACGTCTTTCCCGCCGCCGCGGTGGGA
TTCCCATTTAAAGATGTGGAGAGTTGTTCTCGAGCGTCATATTGGAACGC
CCGCGGTGATGAAAGGCAGGATCACATCCCGGGAAGAGCACTTCTTCGAT
CGCATCTGGTGCGCCACGGGCAGCGACGTATGCTTGGAAAAGCATCCATT
GCTGGGCGGCTTCGTTGATCAACGACCCATCGATACTTGCAATGGATTCC
CTTGTCTGACACCGGACCTGGCTTGGGATCAGGATTGTGAACTGTACGTT
TTGGGTGCTCCTGCGGCCTTGCGTCTCGGCCCTGACGCCTTCAACCTCTT
GGGGGCGCGCACAGGCGCGGCGCGGGTCGCCCACGTCCTCCATAAGCGCC
TCCAAATAGGGGAGGAGACTACCATCATGAAAAGTATCCGGCAGGCAAAG
CAGGAAGTGGCGGCTTTGGGTTTCAAGTACGACCGCAAACGCGAGGCGGT
CCGGAGCGCCGGGCTTGCGCGGCAGGAGGAGACAGGAGTGGGGATGCAGA
AGAGGTCAAAGAGGGGTGTGTGTGCAAGGAAAGGCAAGCCGCGACGAGGT
TGTTGCTGAGCTGTGAGCAATAAGGTCGAATGTAAAGTGTGGACTATTTA
TGACTCAAAAACAATAGTGCTGGCGGAGAGTGCCTTCCAAAACCTCCGGC
CCATTTTTCAAAAAGTAATTCTATCGGGGACTTTGCACCAGAAACTTGG back to topCoding sequence (CDS) from alignment at scaffold_3:1330293..1332591- >mRNA_550 ID=mRNA_550|Name=jgi.p|Nanoce1779_2|627982|organism=Nannochloropsis oceanica|type=CDS|length=5157bp|location=Sequence derived from alignment at scaffold_3:1330293..1332591- (Nannochloropsis oceanica)
GTCTGTAGTGGTAGCTACGGGAAGCACGAGCTGCCCCCGCCTTCCCGAGT
GGTGGCCCTCCGGCCCGGATGCCATGGACTGCCCCTCCGATCATTCCCCA
CACGCTCTGCGTCATGCTTGGGAGCTGCCGCAAGATTTGTGCCTTTCATC
TCCTGCGCCTGCTCCTCTGCAATCCCACGAACGCATCCTGATTGTCGGAG
GAGGGTTAACGGCAGTGCAGCTTGCCGTGTTGGCCGTCGATCAGGGTCAA
GCTCACGCCACCTTAGCTTCTCGTCGCGCCCTGGTCGTCAAGCAATTCGA
CTTTGCCAATGCCTGGATGGACCGCAAACACCGTCCAAGCCTTCTTCGAA
CATTTCTCCAAGCCGATAATGATACCGACCGACTGGCGCTCATCCAGGCG
GCTCGAGGTCTGTCTTCCATTCCGCCTGAGGCCTTGGACATGCTACGCGC
ACGTGAGGGCAGCATCGACCTGCGTGAAGCCACGGAGATCACGTCTTTCC
CGCCGCCGCGGTGGGATTCCCATTTAAAGATGTGGAGAGTTGTTCTCGAG
CGTCATATTGGAACGCCCGCGGTGATGAAAGGCAGGATCACATCCCGGGA
AGAGCACTTCTTCGATCGCATCTGGTGCGCCACGGGCAGCGACGTATGCT
TGGAAAAGCATCCATTGCTGGGCGGCTTCGTTGATCAACGACCCATCGAT
ACTTGCAATGGATTCCCTTGTCTGACACCGGACCTGGCTTGGGATCAGGA
TTGTGAACTGTACGTTTTGGGTGCTCCTGCGGCCTTGCGTCTCGGCCCTG
ACGCCTTCAACCTCTTGGGGGCGCGCACAGGCGCGGCGCGGGTCGCCCAC
GTCCTCCATAAGCGCCTCCAAATAGGGGAGGAGACTACCATCATGAAAAG
TATCCGGCAGGCAAAGCAGGAAGTGGCGGCTTTGGGTTTCAAGTACGACC
GCAAACGCGAGGCGGTCCGGAGCGCCGGGCTTGCGCGGCAGGAGGAGACA
GGAGTGGGGATGCAGAAGAGGTCAAAGAGGGGTGTGTGTGCAAGGAAAGG
CAAGCCGCGACGAGGTTGTTGCTGACCACTGTTCTTGCCATCGAGCCAGT
CTACAAGGACGAGAAGACCGGCCAAGCCGTGAGCCACTTTCGAGTGACGC
TGTGCCGCGGCCGCGAGGCACAAGGACTGGTGGAAGTCATCGAAGCCACA
TGCCTCGCCTAGATATTGCTGTCATTGGCTCTGGCCCCTGTGCTCTCGCG
TTCGTGAGTCGCTTGGCCGCGCCACCTGGTGCCATCGACTTTTCAGCCGA
CTTCCTTTACGGTTTTGACTCAGAGACCGAATCACTGCAGACCACCATCG
GCCGCCTCAATGCCCTCAAGAAAAGCATGAGCACATCCAGCAACGATCAT
CCCCTCCAGGGTCGTGTCAAAGTCTTTGAGAAGAGCGGCGCATGGTTGGG
GAAGTGGGATGGCTTGTTTGACGCCTTGGGAATTCAGCACCTCCGCTCTC
CCCACGTGGCCCACCCTTGCCCGACCCACACGCACGCCATCCTTGCACTT
GCAGAGATGACCAAGACGGTACCAGGAAGTAAATGTGAGCGGGAGATCTT
CGCAGATTTTAAGCACCTGCGATATAGTGGTTGCCACCGTGCTCCTTCGG
TGCGACTCTTTCGCTCCCTGTGTTCGCACCTGTGCAAATCCTTGGGCCTC
GACTCTCTGCTTGAAGAAGGTCTGTAGTGGTAGCTACGGGAAGCACGAGC
TGCCCCCGCCTTCCCGAGTGGTGGCCCTCCGGCCCGGATGCCATGGACTG
CCCCTCCGATCATTCCCCACACGCTCTGCGTCATGCTTGGGAGCTGCCGC
AAGATTTGTGCCTTTCATCTCCTGCGCCTGCTCCTCTGCAATCCCACGAA
CGCATCCTGATTGTCGGAGGAGGGTTAACGGCAGTGCAGCTTGCCGTGTT
GGCCGTCGATCAGGGTCAAGCTCACGCCACCTTAGCTTCTCGTCGCGCCC
TGGTCGTCAAGCAATTCGACTTTGCCAATGCCTGGATGGACCGCAAACAC
CGTCCAAGCCTTCTTCGAACATTTCTCCAAGCCGATAATGATACCGACCG
ACTGGCGCTCATCCAGGCGGCTCGAGGTCTGTCTTCCATTCCGCCTGAGG
CCTTGGACATGCTACGCGCACGTGAGGGCAGCATCGACCTGCGTGAAGCC
ACGGAGATCACGTCTTTCCCGCCGCCGCGGTGGGATTCCCATTTAAAGAT
GTGGAGAGTTGTTCTCGAGCGTCATATTGGAACGCCCGCGGTGATGAAAG
GCAGGATCACATCCCGGGAAGAGCACTTCTTCGATCGCATCTGGTGCGCC
ACGGGCAGCGACGTATGCTTGGAAAAGCATCCATTGCTGGGCGGCTTCGT
TGATCAACGACCCATCGATACTTGCAATGGATTCCCTTGTCTGACACCGG
ACCTGGCTTGGGATCAGGATTGTGAACTGTACGTTTTGGGTGCTCCTGCG
GCCTTGCGTCTCGGCCCTGACGCCTTCAACCTCTTGGGGGCGCGCACAGG
CGCGGCGCGGGTCGCCCACGTCCTCCATAAGCGCCTCCAAATAGGGGAGG
AGACTACCATCATGAAAAGTATCCGGCAGGCAAAGCAGGAAGTGGCGGCT
TTGGGTTTCAAGTACGACCGCAAACGCGAGGCGGTCCGGAGCGCCGGGCT
TGCGCGGCAGGAGGAGACAGGAGTGGGGATGCAGAAGAGGTCAAAGAGGG
GTGTGTGTGCAAGGAAAGGCAAGCCGCGACGAGGTTGTTGCTGACCACTG
TTCTTGCCATCGAGCCAGTCTACAAGGACGAGAAGACCGGCCAAGCCGTG
AGCCACTTTCGAGTGACGCTGTGCCGCGGCCGCGAGGCACAAGGACTGGT
GGAAGTCATCGAAGCCACATGCCTCGCCTAGATATTGCTGTCATTGGCTC
TGGCCCCTGTGCTCTCGCGTTCGTGAGTCGCTTGGCCGCGCCACCTGGTG
CCATCGACTTTTCAGCCGACTTCCTTTACGGTTTTGACTCAGAGACCGAA
TCACTGCAGACCACCATCGGCCGCCTCAATGCCCTCAAGAAAAGCATGAG
CACATCCAGCAACGATCATCCCCTCCAGGGTCGTGTCAAAGTCTTTGAGA
AGAGCGGCGCATGGTTGGGGAAGTGGGATGGCTTGTTTGACGCCTTGGGA
ATTCAGCACCTCCGCTCTCCCCACGTGGCCCACCCTTGCCCGACCCACAC
GCACGCCATCCTTGCACTTGCAGAGATGACCAAGACGGTACCAGGAAGTA
AATGTGAGCGGGAGATCTTCGCAGATTTTAAGCACCTGCGATATAGTGGT
TGCCACCGTGCTCCTTCGGTGCGACTCTTTCGCTCCCTGTGTTCGCACCT
GTGCAAATCCTTGGGCCTCGACTCTCTGCTTGAAGAAGGTCTGTAGTGGT
AGCTACGGGAAGCACGAGCTGCCCCCGCCTTCCCGAGTGGTGGCCCTCCG
GCCCGGATGCCATGGACTGCCCCTCCGATCATTCCCCACACGCTCTGCGT
CATGCTTGGGAGCTGCCGCAAGATTTGTGCCTTTCATCTCCTGCGCCTGC
TCCTCTGCAATCCCACGAACGCATCCTGATTGTCGGAGGAGGGTTAACGG
CAGTGCAGCTTGCCGTGTTGGCCGTCGATCAGGGTCAAGCTCACGCCACC
TTAGCTTCTCGTCGCGCCCTGGTCGTCAAGCAATTCGACTTTGCCAATGC
CTGGATGGACCGCAAACACCGTCCAAGCCTTCTTCGAACATTTCTCCAAG
CCGATAATGATACCGACCGACTGGCGCTCATCCAGGCGGCTCGAGGTCTG
TCTTCCATTCCGCCTGAGGCCTTGGACATGCTACGCGCACGTGAGGGCAG
CATCGACCTGCGTGAAGCCACGGAGATCACGTCTTTCCCGCCGCCGCGGT
GGGATTCCCATTTAAAGATGTGGAGAGTTGTTCTCGAGCGTCATATTGGA
ACGCCCGCGGTGATGAAAGGCAGGATCACATCCCGGGAAGAGCACTTCTT
CGATCGCATCTGGTGCGCCACGGGCAGCGACGTATGCTTGGAAAAGCATC
CATTGCTGGGCGGCTTCGTTGATCAACGACCCATCGATACTTGCAATGGA
TTCCCTTGTCTGACACCGGACCTGGCTTGGGATCAGGATTGTGAACTGTA
CGTTTTGGGTGCTCCTGCGGCCTTGCGTCTCGGCCCTGACGCCTTCAACC
TCTTGGGGGCGCGCACAGGCGCGGCGCGGGTCGCCCACGTCCTCCATAAG
CGCCTCCAAATAGGGGAGGAGACTACCATCATGAAAAGTATCCGGCAGGC
AAAGCAGGAAGTGGCGGCTTTGGGTTTCAAGTACGACCGCAAACGCGAGG
CGGTCCGGAGCGCCGGGCTTGCGCGGCAGGAGGAGACAGGAGTGGGGATG
CAGAAGAGGTCAAAGAGGGGTGTGTGTGCAAGGAAAGGCAAGCCGCGACG
AGGTTGTTGCTGACCACTGTTCTTGCCATCGAGCCAGTCTACAAGGACGA
GAAGACCGGCCAAGCCGTGAGCCACTTTCGAGTGACGCTGTGCCGCGGCC
GCGAGGCACAAGGACTGGTGGAAGTCATCGAAGCCACATGCCTCGCCTAG
ATATTGCTGTCATTGGCTCTGGCCCCTGTGCTCTCGCGTTCGTGAGTCGC
TTGGCCGCGCCACCTGGTGCCATCGACTTTTCAGCCGACTTCCTTTACGG
TTTTGACTCAGAGACCGAATCACTGCAGACCACCATCGGCCGCCTCAATG
CCCTCAAGAAAAGCATGAGCACATCCAGCAACGATCATCCCCTCCAGGGT
CGTGTCAAAGTCTTTGAGAAGAGCGGCGCATGGTTGGGGAAGTGGGATGG
CTTGTTTGACGCCTTGGGAATTCAGCACCTCCGCTCTCCCCACGTGGCCC
ACCCTTGCCCGACCCACACGCACGCCATCCTTGCACTTGCAGAGATGACC
AAGACGGTACCAGGAAGTAAATGTGAGCGGGAGATCTTCGCAGATTTTAA
GCACCTGCGATATAGTGGTTGCCACCGTGCTCCTTCGGTGCGACTCTTTC
GCTCCCTGTGTTCGCACCTGTGCAAATCCTTGGGCCTCGACTCTCTGCTT
GAAGAAG back to top
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