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Properties
| Property Name | Value |
|---|
| TranscriptId | 592822 |
| Track | FilteredModels2 |
| ProteinId | 592736 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:566439..568436 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5499 ID=mRNA_5499|Name=jgi.p|Nanoce1779_2|592736|organism=Nannochloropsis oceanica|type=mRNA|length=1238bp
ACAGTCAAGGAGCAGCGCAACACCACTTCTTCCTACACGTCCATCAATAG
AAGCGTCACTCATGGCGACGGAGGGCGATGAAGGCCTCCCACCTATCGCA
CGGGACGAGTCCACTCGCCTGCAATGCCGGTTTTACGAAGAGCAGTACCC
TAACCCAGAGAGCATGGTGATGGTGAAAGTCATGAACATCGCTGAGATGG
CGGCGGAAGTGATCCTGCTTGAGTACAACGACATTGAGGGCATGATCCTG
CACTCTGAGCTGTCCCGACGCCGCATCCGTTCCATCAAAAAGCTGATCCG
TGTGAACAAGCTGGAGGTGGTGTCGGTACTGCGGGTGGACAAAGATAAAG
GCTACATCGATCTCTCCAAGCGCCGGGTTTCCCCCGATGACGTTATTAAA
TGCGAAGAACGTTACAACAAAGCTAAGGCGGTGCACTCCGTCCTTCGCCA
CGTGGCCGACCAACACGGCATCTGGCTCGAGGATCTGTACAAGAAGGTGG
GCTGGCCCCTCTACCGCAAGCATGGACACGCCTTCGATGCTTTCTCCAAG
TCACTCCTTCCCGAAGGCGACGAGCGGTACGAAGACGTGTTTGCTGACCT
TGATATCACCCCTGAGCTGAAAAACAGCATTACTACGTACATTAAACGTC
GCCTCGCGCCCAAGCCAATCAAAATCCGTGCTGATATTGAAGTGACGTGC
TTTGCTTACGAGGGGATTGAAGCCATCCGTGCGGCGTTGCAGGCGGGCTT
GGACGCCCCTTCTTCGAGCGAGGTGGATATAAAACTAATTGCGCCACCAA
TGTATGTCGTCACTACCAACACGCTAGAGAAGGATGTGGGCATCGAGAAC
CTGAACCGAGTGATTGAGAAAATCCGAGCGAAGGTTACCGAAAGTGAGGG
GAGGTTAGAAGTCAAGATGGCACCCAAGGTGGTAAGCCAGCGGGACGAGG
CGGACTTGCAGGCCATGATCAAGAGGATTGAAGAAGAGAATGAGGAGGTG
GATGGTGATGCCCCGGAGGATGCATAAAGAGAGAAAGGAGGTTGGTCCAG
AGCGGAAGGAACAGGCGAGACATATGCCAGCAGAGGGCGCAAAATAAAAA
TTAAGAAACATCCGGGATATACAACGATGCTTATTGTGGTGACCGACAAG
TTGTTCGGGGATTTCTTCCCGCTTTTTGTGGTTTTGTTTTGAGGTGGTAG
ATGGGCCATCTTCAGACTCATGAGAGCACCGCTTGTGG back to topprotein sequence of jgi.p|Nanoce1779_2|592736 >mRNA_5499-protein ID=mRNA_5499-protein|Name=jgi.p|Nanoce1779_2|592736|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MATEGDEGLPPIARDESTRLQCRFYEEQYPNPESMVMVKVMNIAEMAAEV
ILLEYNDIEGMILHSELSRRRIRSIKKLIRVNKLEVVSVLRVDKDKGYID
LSKRRVSPDDVIKCEERYNKAKAVHSVLRHVADQHGIWLEDLYKKVGWPL
YRKHGHAFDAFSKSLLPEGDERYEDVFADLDITPELKNSITTYIKRRLAP
KPIKIRADIEVTCFAYEGIEAIRAALQAGLDAPSSSEVDIKLIAPPMYVV
TTNTLEKDVGIENLNRVIEKIRAKVTESEGRLEVKMAPKVVSQRDEADLQ
AMIKRIEEENEEVDGDAPEDA* back to topmRNA from alignment at scaffold_13:566439..568436+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5499 ID=mRNA_5499|Name=jgi.p|Nanoce1779_2|592736|organism=Nannochloropsis oceanica|type=mRNA|length=1998bp|location=Sequence derived from alignment at scaffold_13:566439..568436+ (Nannochloropsis oceanica)
ACAGTCAAGGAGCAGCGCAACACCACTTCTTCCTACACGTCCATCAATAG
AAGCGTCACTCATGGTACATTCTTCTCCCACCTTTCTCCCCTCCCCCCAA
ACCAATGTCTCCTATTCTTCTATTCCTATTGCTTTCATCCCTCTATTCCT
AACATTCTGCCCCCTTGCTTCACCATAACCATCATCATAATAAGGCGACG
GAGGGCGATGAAGGCCTCCCACCTATCGCACGGGACGAGTCCACTCGCCT
GCAATGCCGGTTTTACGAAGAGCAGTACCCTAACCCAGAGAGCATGGTGA
TGGTGAAAGTCATGAACATCGCTGAGATGGCGGCGGAAGTGATCCTGCTT
GAGTACAACGACATTGAGGTGAGGGCTCCCGGGGGGAGAGAGGGAAGGAG
GGGAGGGATGTGAAACAGGCGGCACGCAAGAGAGAAAAGAATTTGAACTC
TTCGTCGTTGGGTGTATAAGAGTAGGCTGTTCGCCCTCTGGGCCTTTCTT
CTCACACGGCCCCTCTCTCCCACCTTCCCCCTTACTTTATAACAGGGCAT
GATCCTGCACTCTGAGCTGTCCCGACGCCGCATCCGTTCCATCAAAAAGC
TGATCCGTGTGAACAAGCTGGAGGTGGTGTCGGTACTGCGGGTGGACAAA
GATAAAGGTAAATTTCTGCGTGTACATTGTTGTGCCTCTACCTACCTCTA
TTGAACAACCATACGAGCAGCGAGCAGTGAGCGCAACCCCTTCACCTATG
CTGATCCTTCCCTCCCTCCCTTCCTCTTCCCTCGCCAGGCTACATCGATC
TCTCCAAGCGCCGGGTTTCCCCCGATGACGTTATTAAATGCGAAGAACGT
TACAACAAAGCTAAGGCGGTGCACTCCGTCCTTCGCCACGTGGCCGACCA
ACACGGCATCTGGCTCGAGGATCTGTACAAGAAGGTGGGCTGGCCCCTCT
ACCGCAAGCATGGACACGCCTTCGATGCTTTCTCCAAGGTACGTGCCTAT
GTCCTTTTCGTCTTTCCTCCCGTTCTTCCTTTAATCTGTTCAGCGGATAT
GGAAGAGCTGTCTCAGCACTCATTAACACCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCTCCTTACCCCCCCAGTCACTCCTTCCCGAAGGCGACGAG
CGGTACGAAGACGTGTTTGCTGACCTTGATATCACCCCTGAGCTGAAAAA
CAGCATTACTACGTACATTAAACGTCGCCTCGCGCCCAAGCCAATCAAAA
TCCGTGCTGATATTGAAGTGACGTGCTTTGCTTACGAGGGGATTGAAGCC
ATCCGTGCGGCGTTGCAGGCGGGCTTGGACGCCCCTTCTTCGAGCGAGGT
GGATATAAAACTAATTGCGCCACCAATGTAAGCGTCGGGGAGGGAAGGAG
AAGGCCTTTCTGTCTATTTTGTCTTGTCTCTTTCGTTTTGTCTGCCTTCT
GTCTGTCTGTCCTTAACTCCTTCTGCCTATATTGCTCACTTACCCTCCCT
CTCTCATTACCTCTTCTACTACTAGGTATGTCGTCACTACCAACACGCTA
GAGAAGGATGTGGGCATCGAGAACCTGAACCGAGTGATTGAGAAAATCCG
AGCGAAGGTTACCGAAAGTGAGGGGAGGTTAGAAGTCAAGATGGCACCCA
AGGTGGTAAGCCAGCGGGACGAGGCGGACTTGCAGGCCATGATCAAGAGG
ATTGAAGAAGAGAATGAGGAGGTGGATGGTGATGCCCCGGAGGATGCATA
AAGAGAGAAAGGGGAGAAAGAAAGGAGGGACGGAGGGAGGAGGTGGGGAG
GTTGGTCCAGAGCGGAAGGAACAGGCGAGACATATGCCAGCAGAGGGCGC
AAAATAAAAATTAAGAAACATCCGGGATATACAACGATGCTTATTGTGGT
GACCGACAAGTTGTTCGGGGATTTCTTCCCGCTTTTTGTGGTTTTGTTTT
GAGGTGGTAGATGGGCCATCTTCAGACTCATGAGAGCACCGCTTGTGG back to topCoding sequence (CDS) from alignment at scaffold_13:566439..568436+ >mRNA_5499 ID=mRNA_5499|Name=jgi.p|Nanoce1779_2|592736|organism=Nannochloropsis oceanica|type=CDS|length=5796bp|location=Sequence derived from alignment at scaffold_13:566439..568436+ (Nannochloropsis oceanica)
ATGGCGACGGAGGGCGATGAAGGCCTCCCACCTATCGCACGGGACGAGTC
CACTCGCCTGCAATGCCGGTTTTACGAAGAGCAGTACCCTAACCCAGAGA
GCATGGTGATGGTGAAAGTCATGAACATCGCTGAGATGGCGGCGGAAGTG
ATCCTGCTTGAGTACAACGACATTGAGGGCATGATCCTGCACTCTGAGCT
GTCCCGACGCCGCATCCGTTCCATCAAAAAGCTGATCCGTGTGAACAAGC
TGGAGGTGGTGTCGGTACTGCGGGTGGACAAAGATAAAGGCTACATCGAT
CTCTCCAAGCGCCGGGTTTCCCCCGATGACGTTATTAAATGCGAAGAACG
TTACAACAAAGCTAAGGCGGTGCACTCCGTCCTTCGCCACGTGGCCGACC
AACACGGCATCTGGCTCGAGGATCTGTACAAGAAGGTGGGCTGGCCCCTC
TACCGCAAGCATGGACACGCCTTCGATGCTTTCTCCAAGTCACTCCTTCC
CGAAGGCGACGAGCGGTACGAAGACGTGTTTGCTGACCTTGATATCACCC
CTGAGCTGAAAAACAGCATTACTACGTACATTAAACGTCGCCTCGCGCCC
AAGCCAATCAAAATCCGTGCTGATATTGAAGTGACGTGCTTTGCTTACGA
GGGGATTGAAGCCATCCGTGCGGCGTTGCAGGCGGGCTTGGACGCCCCTT
CTTCGAGCGAGGTGGATATAAAACTAATTGCGCCACCAATGTATGTCGTC
ACTACCAACACGCTAGAGAAGGATGTGGGCATCGAGAACCTGAACCGAGT
GATTGAGAAAATCCGAGCGAAGGTTACCGAAAGTGAGGGGAGGTTAGAAG
TCAAGATGGCACCCAAGGTGGTAAGCCAGCGGGACGAGGCGGACTTGCAG
GCCATGATCAAGAGGATTGAAGAAGAGAATGAGGAGGTGGATGGTGATGC
CCCGGAGGATGCATAAATGGCGACGGAGGGCGATGAAGGCCTCCCACCTA
TCGCACGGGACGAGTCCACTCGCCTGCAATGCCGGTTTTACGAAGAGCAG
TACCCTAACCCAGAGAGCATGGTGATGGTGAAAGTCATGAACATCGCTGA
GATGGCGGCGGAAGTGATCCTGCTTGAGTACAACGACATTGAGGGCATGA
TCCTGCACTCTGAGCTGTCCCGACGCCGCATCCGTTCCATCAAAAAGCTG
ATCCGTGTGAACAAGCTGGAGGTGGTGTCGGTACTGCGGGTGGACAAAGA
TAAAGGCTACATCGATCTCTCCAAGCGCCGGGTTTCCCCCGATGACGTTA
TTAAATGCGAAGAACGTTACAACAAAGCTAAGGCGGTGCACTCCGTCCTT
CGCCACGTGGCCGACCAACACGGCATCTGGCTCGAGGATCTGTACAAGAA
GGTGGGCTGGCCCCTCTACCGCAAGCATGGACACGCCTTCGATGCTTTCT
CCAAGTCACTCCTTCCCGAAGGCGACGAGCGGTACGAAGACGTGTTTGCT
GACCTTGATATCACCCCTGAGCTGAAAAACAGCATTACTACGTACATTAA
ACGTCGCCTCGCGCCCAAGCCAATCAAAATCCGTGCTGATATTGAAGTGA
CGTGCTTTGCTTACGAGGGGATTGAAGCCATCCGTGCGGCGTTGCAGGCG
GGCTTGGACGCCCCTTCTTCGAGCGAGGTGGATATAAAACTAATTGCGCC
ACCAATGTATGTCGTCACTACCAACACGCTAGAGAAGGATGTGGGCATCG
AGAACCTGAACCGAGTGATTGAGAAAATCCGAGCGAAGGTTACCGAAAGT
GAGGGGAGGTTAGAAGTCAAGATGGCACCCAAGGTGGTAAGCCAGCGGGA
CGAGGCGGACTTGCAGGCCATGATCAAGAGGATTGAAGAAGAGAATGAGG
AGGTGGATGGTGATGCCCCGGAGGATGCATAAATGGCGACGGAGGGCGAT
GAAGGCCTCCCACCTATCGCACGGGACGAGTCCACTCGCCTGCAATGCCG
GTTTTACGAAGAGCAGTACCCTAACCCAGAGAGCATGGTGATGGTGAAAG
TCATGAACATCGCTGAGATGGCGGCGGAAGTGATCCTGCTTGAGTACAAC
GACATTGAGGGCATGATCCTGCACTCTGAGCTGTCCCGACGCCGCATCCG
TTCCATCAAAAAGCTGATCCGTGTGAACAAGCTGGAGGTGGTGTCGGTAC
TGCGGGTGGACAAAGATAAAGGCTACATCGATCTCTCCAAGCGCCGGGTT
TCCCCCGATGACGTTATTAAATGCGAAGAACGTTACAACAAAGCTAAGGC
GGTGCACTCCGTCCTTCGCCACGTGGCCGACCAACACGGCATCTGGCTCG
AGGATCTGTACAAGAAGGTGGGCTGGCCCCTCTACCGCAAGCATGGACAC
GCCTTCGATGCTTTCTCCAAGTCACTCCTTCCCGAAGGCGACGAGCGGTA
CGAAGACGTGTTTGCTGACCTTGATATCACCCCTGAGCTGAAAAACAGCA
TTACTACGTACATTAAACGTCGCCTCGCGCCCAAGCCAATCAAAATCCGT
GCTGATATTGAAGTGACGTGCTTTGCTTACGAGGGGATTGAAGCCATCCG
TGCGGCGTTGCAGGCGGGCTTGGACGCCCCTTCTTCGAGCGAGGTGGATA
TAAAACTAATTGCGCCACCAATGTATGTCGTCACTACCAACACGCTAGAG
AAGGATGTGGGCATCGAGAACCTGAACCGAGTGATTGAGAAAATCCGAGC
GAAGGTTACCGAAAGTGAGGGGAGGTTAGAAGTCAAGATGGCACCCAAGG
TGGTAAGCCAGCGGGACGAGGCGGACTTGCAGGCCATGATCAAGAGGATT
GAAGAAGAGAATGAGGAGGTGGATGGTGATGCCCCGGAGGATGCATAAAT
GGCGACGGAGGGCGATGAAGGCCTCCCACCTATCGCACGGGACGAGTCCA
CTCGCCTGCAATGCCGGTTTTACGAAGAGCAGTACCCTAACCCAGAGAGC
ATGGTGATGGTGAAAGTCATGAACATCGCTGAGATGGCGGCGGAAGTGAT
CCTGCTTGAGTACAACGACATTGAGGGCATGATCCTGCACTCTGAGCTGT
CCCGACGCCGCATCCGTTCCATCAAAAAGCTGATCCGTGTGAACAAGCTG
GAGGTGGTGTCGGTACTGCGGGTGGACAAAGATAAAGGCTACATCGATCT
CTCCAAGCGCCGGGTTTCCCCCGATGACGTTATTAAATGCGAAGAACGTT
ACAACAAAGCTAAGGCGGTGCACTCCGTCCTTCGCCACGTGGCCGACCAA
CACGGCATCTGGCTCGAGGATCTGTACAAGAAGGTGGGCTGGCCCCTCTA
CCGCAAGCATGGACACGCCTTCGATGCTTTCTCCAAGTCACTCCTTCCCG
AAGGCGACGAGCGGTACGAAGACGTGTTTGCTGACCTTGATATCACCCCT
GAGCTGAAAAACAGCATTACTACGTACATTAAACGTCGCCTCGCGCCCAA
GCCAATCAAAATCCGTGCTGATATTGAAGTGACGTGCTTTGCTTACGAGG
GGATTGAAGCCATCCGTGCGGCGTTGCAGGCGGGCTTGGACGCCCCTTCT
TCGAGCGAGGTGGATATAAAACTAATTGCGCCACCAATGTATGTCGTCAC
TACCAACACGCTAGAGAAGGATGTGGGCATCGAGAACCTGAACCGAGTGA
TTGAGAAAATCCGAGCGAAGGTTACCGAAAGTGAGGGGAGGTTAGAAGTC
AAGATGGCACCCAAGGTGGTAAGCCAGCGGGACGAGGCGGACTTGCAGGC
CATGATCAAGAGGATTGAAGAAGAGAATGAGGAGGTGGATGGTGATGCCC
CGGAGGATGCATAAATGGCGACGGAGGGCGATGAAGGCCTCCCACCTATC
GCACGGGACGAGTCCACTCGCCTGCAATGCCGGTTTTACGAAGAGCAGTA
CCCTAACCCAGAGAGCATGGTGATGGTGAAAGTCATGAACATCGCTGAGA
TGGCGGCGGAAGTGATCCTGCTTGAGTACAACGACATTGAGGGCATGATC
CTGCACTCTGAGCTGTCCCGACGCCGCATCCGTTCCATCAAAAAGCTGAT
CCGTGTGAACAAGCTGGAGGTGGTGTCGGTACTGCGGGTGGACAAAGATA
AAGGCTACATCGATCTCTCCAAGCGCCGGGTTTCCCCCGATGACGTTATT
AAATGCGAAGAACGTTACAACAAAGCTAAGGCGGTGCACTCCGTCCTTCG
CCACGTGGCCGACCAACACGGCATCTGGCTCGAGGATCTGTACAAGAAGG
TGGGCTGGCCCCTCTACCGCAAGCATGGACACGCCTTCGATGCTTTCTCC
AAGTCACTCCTTCCCGAAGGCGACGAGCGGTACGAAGACGTGTTTGCTGA
CCTTGATATCACCCCTGAGCTGAAAAACAGCATTACTACGTACATTAAAC
GTCGCCTCGCGCCCAAGCCAATCAAAATCCGTGCTGATATTGAAGTGACG
TGCTTTGCTTACGAGGGGATTGAAGCCATCCGTGCGGCGTTGCAGGCGGG
CTTGGACGCCCCTTCTTCGAGCGAGGTGGATATAAAACTAATTGCGCCAC
CAATGTATGTCGTCACTACCAACACGCTAGAGAAGGATGTGGGCATCGAG
AACCTGAACCGAGTGATTGAGAAAATCCGAGCGAAGGTTACCGAAAGTGA
GGGGAGGTTAGAAGTCAAGATGGCACCCAAGGTGGTAAGCCAGCGGGACG
AGGCGGACTTGCAGGCCATGATCAAGAGGATTGAAGAAGAGAATGAGGAG
GTGGATGGTGATGCCCCGGAGGATGCATAAATGGCGACGGAGGGCGATGA
AGGCCTCCCACCTATCGCACGGGACGAGTCCACTCGCCTGCAATGCCGGT
TTTACGAAGAGCAGTACCCTAACCCAGAGAGCATGGTGATGGTGAAAGTC
ATGAACATCGCTGAGATGGCGGCGGAAGTGATCCTGCTTGAGTACAACGA
CATTGAGGGCATGATCCTGCACTCTGAGCTGTCCCGACGCCGCATCCGTT
CCATCAAAAAGCTGATCCGTGTGAACAAGCTGGAGGTGGTGTCGGTACTG
CGGGTGGACAAAGATAAAGGCTACATCGATCTCTCCAAGCGCCGGGTTTC
CCCCGATGACGTTATTAAATGCGAAGAACGTTACAACAAAGCTAAGGCGG
TGCACTCCGTCCTTCGCCACGTGGCCGACCAACACGGCATCTGGCTCGAG
GATCTGTACAAGAAGGTGGGCTGGCCCCTCTACCGCAAGCATGGACACGC
CTTCGATGCTTTCTCCAAGTCACTCCTTCCCGAAGGCGACGAGCGGTACG
AAGACGTGTTTGCTGACCTTGATATCACCCCTGAGCTGAAAAACAGCATT
ACTACGTACATTAAACGTCGCCTCGCGCCCAAGCCAATCAAAATCCGTGC
TGATATTGAAGTGACGTGCTTTGCTTACGAGGGGATTGAAGCCATCCGTG
CGGCGTTGCAGGCGGGCTTGGACGCCCCTTCTTCGAGCGAGGTGGATATA
AAACTAATTGCGCCACCAATGTATGTCGTCACTACCAACACGCTAGAGAA
GGATGTGGGCATCGAGAACCTGAACCGAGTGATTGAGAAAATCCGAGCGA
AGGTTACCGAAAGTGAGGGGAGGTTAGAAGTCAAGATGGCACCCAAGGTG
GTAAGCCAGCGGGACGAGGCGGACTTGCAGGCCATGATCAAGAGGATTGA
AGAAGAGAATGAGGAGGTGGATGGTGATGCCCCGGAGGATGCATAA back to top
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