jgi.p|Nanoce1779_2|592730, mRNA_5498 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592730
Unique NamemRNA_5498
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1270
Alignment locationscaffold_13:561742..563011 +

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Properties
Property NameValue
TranscriptId592816
TrackFilteredModels2
ProteinId592730
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:561742..563011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592730gene_5498Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592730mRNA_5498-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5498CDS_5498Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5498 ID=mRNA_5498|Name=jgi.p|Nanoce1779_2|592730|organism=Nannochloropsis oceanica|type=mRNA|length=1270bp
AGGACATCGCCCGATAGCACTGCACTAGCGGCGCTACCAACCACCGCCAC
TTAGCGAGACACCATCGTCTCTCTTCCTGTACCCAGCCATCAACGGGAAA
AGTGGCCCACTCTCTGTCTCCGTCTGCCCCGCCGCCTTTTCGTCCTCGTA
GAGAGTGAAGCCCCCTTCCTCCTTGGTTGTCCTGTCTTGGACACACACCA
GGCACGCGAGGCGACACACACACCCGACACCAACATCACTGCTTTTCACA
CCGCCGCCTGCTCCCTGCTGGTATGGCCGCGGCGAGGGATGTGGGTGCTC
AGGACAATCTAGCCACAATCAAGAGTGAAATTGGTGCGACTTTTACGGCA
GGAGAAACAGAGAACAACAACAACCACAACAACAGCAACAATTTCATGCG
CACCAGCAGCTCCAAGAAACAATGCCAACGCCAACGTGGGGCCTTGGGCG
AGGACTCGGCCATGCTTGAGATCGACGACGAGGTCAACGAGGATGACGGT
ACCTCCGGCAGCGGGATAACACCAGGCGGCAACAAGCTCATCAGTAACTG
CAGCGAAGGCAACGAGCGTTCATCCTCCACCTCCTCTTCCCCACCGTCTG
AAACTTCAACTTCACTATCTGCCTGGCCTGGCCATGGTGGACACAGGGGG
AGCGGGGAGAGCAGCGGCGGGAGCACAGGGCATGGTGAGGGAAGTACCAG
CAGCAGTGGAGGAGGAGGATCTTCGAATGAGTCGACGGGAGGGAGTTCCA
CAGCGAGTCAGGCAGCGGAGAGAAGGAAAGCACGGGCACGGAAGATGGGT
TTGTTGCAAAGTAGGGGAGAAAGGGATATGATACTGAGTGCCTCGCACAT
GCAGCACCAGCAGCACCACCACAACCCCTTTGGAGACGATGATGAGGATG
GACGGGGTGGAGGGAGGGAGGAGGACTTGCCGGGGAGTAGCTCGAGCTCG
GTGACGGGGGAAGTAACGATTATGAGACGGAGGAAAGACGCGGAGGACAT
GGCGGCGGCGGTTGCCCTGACGAAGAAGCAATTGAGGATGATTCGGAACA
GGGAGTCAGCGGCGTTATCAAGGAAGAGGAAGAGGGATCAGGTGGAAGCT
CTCGAGCTAGAGGTAGAGGCATTGAAGGACAAGAATAGACAGCTGAAACA
GCGATTAGCGCGGTACGAAGGGCTGGATACTCTCGACTTAGCCCGAAGTG
CGGGGGGAGACGTGGTAAGGGGTAGTGGAGGGGTTGGGGGAGGATCTGGG
GGAGGGGGGGGCTTATTAGG
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protein sequence of jgi.p|Nanoce1779_2|592730

>mRNA_5498-protein ID=mRNA_5498-protein|Name=jgi.p|Nanoce1779_2|592730|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MAAARDVGAQDNLATIKSEIGATFTAGETENNNNHNNSNNFMRTSSSKKQ
CQRQRGALGEDSAMLEIDDEVNEDDGTSGSGITPGGNKLISNCSEGNERS
SSTSSSPPSETSTSLSAWPGHGGHRGSGESSGGSTGHGEGSTSSSGGGGS
SNESTGGSSTASQAAERRKARARKMGLLQSRGERDMILSASHMQHQQHHH
NPFGDDDEDGRGGGREEDLPGSSSSSVTGEVTIMRRRKDAEDMAAAVALT
KKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARYEG
LDTLDLARSAGGDVVRGSGGVGGGSGGGGGLL
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mRNA from alignment at scaffold_13:561742..563011+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5498 ID=mRNA_5498|Name=jgi.p|Nanoce1779_2|592730|organism=Nannochloropsis oceanica|type=mRNA|length=1270bp|location=Sequence derived from alignment at scaffold_13:561742..563011+ (Nannochloropsis oceanica)
AGGACATCGCCCGATAGCACTGCACTAGCGGCGCTACCAACCACCGCCAC
TTAGCGAGACACCATCGTCTCTCTTCCTGTACCCAGCCATCAACGGGAAA
AGTGGCCCACTCTCTGTCTCCGTCTGCCCCGCCGCCTTTTCGTCCTCGTA
GAGAGTGAAGCCCCCTTCCTCCTTGGTTGTCCTGTCTTGGACACACACCA
GGCACGCGAGGCGACACACACACCCGACACCAACATCACTGCTTTTCACA
CCGCCGCCTGCTCCCTGCTGGTATGGCCGCGGCGAGGGATGTGGGTGCTC
AGGACAATCTAGCCACAATCAAGAGTGAAATTGGTGCGACTTTTACGGCA
GGAGAAACAGAGAACAACAACAACCACAACAACAGCAACAATTTCATGCG
CACCAGCAGCTCCAAGAAACAATGCCAACGCCAACGTGGGGCCTTGGGCG
AGGACTCGGCCATGCTTGAGATCGACGACGAGGTCAACGAGGATGACGGT
ACCTCCGGCAGCGGGATAACACCAGGCGGCAACAAGCTCATCAGTAACTG
CAGCGAAGGCAACGAGCGTTCATCCTCCACCTCCTCTTCCCCACCGTCTG
AAACTTCAACTTCACTATCTGCCTGGCCTGGCCATGGTGGACACAGGGGG
AGCGGGGAGAGCAGCGGCGGGAGCACAGGGCATGGTGAGGGAAGTACCAG
CAGCAGTGGAGGAGGAGGATCTTCGAATGAGTCGACGGGAGGGAGTTCCA
CAGCGAGTCAGGCAGCGGAGAGAAGGAAAGCACGGGCACGGAAGATGGGT
TTGTTGCAAAGTAGGGGAGAAAGGGATATGATACTGAGTGCCTCGCACAT
GCAGCACCAGCAGCACCACCACAACCCCTTTGGAGACGATGATGAGGATG
GACGGGGTGGAGGGAGGGAGGAGGACTTGCCGGGGAGTAGCTCGAGCTCG
GTGACGGGGGAAGTAACGATTATGAGACGGAGGAAAGACGCGGAGGACAT
GGCGGCGGCGGTTGCCCTGACGAAGAAGCAATTGAGGATGATTCGGAACA
GGGAGTCAGCGGCGTTATCAAGGAAGAGGAAGAGGGATCAGGTGGAAGCT
CTCGAGCTAGAGGTAGAGGCATTGAAGGACAAGAATAGACAGCTGAAACA
GCGATTAGCGCGGTACGAAGGGCTGGATACTCTCGACTTAGCCCGAAGTG
CGGGGGGAGACGTGGTAAGGGGTAGTGGAGGGGTTGGGGGAGGATCTGGG
GGAGGGGGGGGCTTATTAGG
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Coding sequence (CDS) from alignment at scaffold_13:561742..563011+

>mRNA_5498 ID=mRNA_5498|Name=jgi.p|Nanoce1779_2|592730|organism=Nannochloropsis oceanica|type=CDS|length=997bp|location=Sequence derived from alignment at scaffold_13:561742..563011+ (Nannochloropsis oceanica)
ATGGCCGCGGCGAGGGATGTGGGTGCTCAGGACAATCTAGCCACAATCAA
GAGTGAAATTGGTGCGACTTTTACGGCAGGAGAAACAGAGAACAACAACA
ACCACAACAACAGCAACAATTTCATGCGCACCAGCAGCTCCAAGAAACAA
TGCCAACGCCAACGTGGGGCCTTGGGCGAGGACTCGGCCATGCTTGAGAT
CGACGACGAGGTCAACGAGGATGACGGTACCTCCGGCAGCGGGATAACAC
CAGGCGGCAACAAGCTCATCAGTAACTGCAGCGAAGGCAACGAGCGTTCA
TCCTCCACCTCCTCTTCCCCACCGTCTGAAACTTCAACTTCACTATCTGC
CTGGCCTGGCCATGGTGGACACAGGGGGAGCGGGGAGAGCAGCGGCGGGA
GCACAGGGCATGGTGAGGGAAGTACCAGCAGCAGTGGAGGAGGAGGATCT
TCGAATGAGTCGACGGGAGGGAGTTCCACAGCGAGTCAGGCAGCGGAGAG
AAGGAAAGCACGGGCACGGAAGATGGGTTTGTTGCAAAGTAGGGGAGAAA
GGGATATGATACTGAGTGCCTCGCACATGCAGCACCAGCAGCACCACCAC
AACCCCTTTGGAGACGATGATGAGGATGGACGGGGTGGAGGGAGGGAGGA
GGACTTGCCGGGGAGTAGCTCGAGCTCGGTGACGGGGGAAGTAACGATTA
TGAGACGGAGGAAAGACGCGGAGGACATGGCGGCGGCGGTTGCCCTGACG
AAGAAGCAATTGAGGATGATTCGGAACAGGGAGTCAGCGGCGTTATCAAG
GAAGAGGAAGAGGGATCAGGTGGAAGCTCTCGAGCTAGAGGTAGAGGCAT
TGAAGGACAAGAATAGACAGCTGAAACAGCGATTAGCGCGGTACGAAGGG
CTGGATACTCTCGACTTAGCCCGAAGTGCGGGGGGAGACGTGGTAAGGGG
TAGTGGAGGGGTTGGGGGAGGATCTGGGGGAGGGGGGGGCTTATTAG
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Synonyms
Publications