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Properties
| Property Name | Value |
|---|
| TranscriptId | 631190 |
| Track | FilteredModels2 |
| ProteinId | 631104 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:558802..561042 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5497 ID=mRNA_5497|Name=jgi.p|Nanoce1779_2|631104|organism=Nannochloropsis oceanica|type=mRNA|length=2153bp
AGGACTCCTGTCGCGCTTAGGCATGGTCAAATTCTTCACCACCATCGCAA
ACTGCAGGCTTCGCTCCGCTCTGCTTTTGCTCCTGCTGCCGCTCCTCTCT
TTTGTGCTAGACATGGTCGCTAGGGCCGACGGCTCGATAAGTAGCACCAC
TACTGCAACTCCGTTCCCAGAAACTCAAAAATCGCTCGTACAAGGCCAAC
AAAAACAACAAGAGGGACGAAATTATGACAGTCTAGGAGATATCGATCGG
CAAGGGCAGCATGAGAGGCCGCGCAAGTCCGAGGCTTTCCATGCGGAGGA
GGAGGCACTCAACACCCAACGAGCAGGAGCGACGCTGCAGCAGCCACAGC
ACCCTGTGCCCTCCTTCGATAAAGCTATGGACGATTCTGACGATAATCTG
CTGAGCAATTTCGACGCCTTGTTGGCAGAGGTAATGCTGGGCGCGGAAGA
GGTGGGGCTCATGCAAGTAGCCTCCTCGCTCTCTGGAGAAGGAGGCGAGG
CCCTCTATCAAACTTCTATTGCTCCTGCTTCAGGCCTTGGCGACAAGAAA
GCCCAAGAGATGGATAAAAACGCTGATAGCGTGACACTCGGCACTGGCCA
ACCAAGTCTCCACAATGAGCACCACGGCGACCTTGCCGAGGCCCACCACC
GTGCTCTCTCTCACAAGAAAAAGACGGGGTCTGCGGTCTACTATCCCGAC
GGCAACTTCCTGCCAGCCACCGCGGTTGGCGGAGCAGGTGGCTTGGGCGG
CCGTCCTGGCATTGGGCTCGCTCCGTCCGTGCGTCCAGGCATCACTCTCG
GCGTGACACGATTTCGCGATTCGATCGATGCCCGCAATCGCAAGGTAAAG
CGAGGAGGCCATGCCCTGTGCACTAATTTTCGTTTCATACCACCCTTATC
TTTCCCTGCTGAAGGCGTGGGACCCTCGAACGTTGAAATCGGTGATTTGA
ACGGCGATTGTATCAAGGATCTGGTGGTGTCTGCCTCAGGCTCGGACGTG
ATTGTGATCTTTCTAGGGTGTGGGGACGGAACTTTTTTTCCTGGCGTTCG
GTATCCTGTGGGGCCTCCCGGTAGCTTCCCATACCGAGTTCGACTGGCGG
ACGTGAATCATGATGGTCGCTTGGACATTATCACCGCCAATTTGGGCGGG
GCCGCCCTGTCTATTTTGCTTGGGCGCGGCGATGGAACCTTTACCAATGG
ATTTGTTTTTCCTACTGGAGGTGGTGGGCCCGTGGACCTGGCGCTGGGTG
ATTTCAACGGCGACGGGATTCTGGATGTCGCACTGGCGCTCGCCCAATGC
GAGTCGTTGACTATTTTGTTCGGAGACGGTCGAGGGTCCTTTGTGCGGCC
GCTTGAGATTGCACTCGGCTCAGGCTTTCCACTCTCCATTTTGGCAGTAG
ACTTGAATTTGGATGGATTCGCGGATTTGGTCGTCGGCATGTCGGCCTTG
GGTCGGAACTTGGCTGTGCTCACCAGCCTAGGCGACGGTACGTTCCGCCG
GCCTGTGTTGCACGAGCTTGGCAAACATAACAGGCCTGTCAGCCTGGCGG
TGGGATACTTCAACTGTGATCTTTTCCCAGATATCGTTTTAGTGAATGGA
GGATCTGACAATTCTTTGTCGGTGTTGTTGGGCCGCGGTGATGGCAGCTT
CCGCACCCCTAGGAGCTTTTCCGTCTCGCCGGGGTTGGCGCCCATGGCCT
TAGCAGTAGGGGACTTTAACGGGGATCTGATTCCTGATATTGTGACAGCC
AATGCTTTATCTAATGATGTGACAATCCTGCGTGGACATGGTGACGGAAC
ATTTTCGCGGGTGCGTACATTTCCAGTAGACGGTGTTGGTATACCAGGTC
CCGCGGCACTCGCGGTCGGACTGCTCAACAAGGACATAAAGCACGACATT
GTTGTTGTACACTTCTCTGGCAATTTGGTGTCTATCTTACTCAATACATG
CACCAAGGAGCTCTTCAAACACATCTGAAAGGGGAAGAACACTAGGGGGT
TTAGGAGGGGTAGATGCCGGCATCAGTCCCACTCGTGGTTGCGGAATAAC
CGGCTGCCAACCAACTACGTACTACCCCGTCACCCGGGGCGGGCTTACTT
TATTTGCTCATAATATGATAGAAGTAATCGCAACCATGCCGGTGGCAAAG
CGC back to topprotein sequence of jgi.p|Nanoce1779_2|631104 >mRNA_5497-protein ID=mRNA_5497-protein|Name=jgi.p|Nanoce1779_2|631104|organism=Nannochloropsis oceanica|type=polypeptide|length=652bp
MVKFFTTIANCRLRSALLLLLLPLLSFVLDMVARADGSISSTTTATPFPE
TQKSLVQGQQKQQEGRNYDSLGDIDRQGQHERPRKSEAFHAEEEALNTQR
AGATLQQPQHPVPSFDKAMDDSDDNLLSNFDALLAEVMLGAEEVGLMQVA
SSLSGEGGEALYQTSIAPASGLGDKKAQEMDKNADSVTLGTGQPSLHNEH
HGDLAEAHHRALSHKKKTGSAVYYPDGNFLPATAVGGAGGLGGRPGIGLA
PSVRPGITLGVTRFRDSIDARNRKVKRGGHALCTNFRFIPPLSFPAEGVG
PSNVEIGDLNGDCIKDLVVSASGSDVIVIFLGCGDGTFFPGVRYPVGPPG
SFPYRVRLADVNHDGRLDIITANLGGAALSILLGRGDGTFTNGFVFPTGG
GGPVDLALGDFNGDGILDVALALAQCESLTILFGDGRGSFVRPLEIALGS
GFPLSILAVDLNLDGFADLVVGMSALGRNLAVLTSLGDGTFRRPVLHELG
KHNRPVSLAVGYFNCDLFPDIVLVNGGSDNSLSVLLGRGDGSFRTPRSFS
VSPGLAPMALAVGDFNGDLIPDIVTANALSNDVTILRGHGDGTFSRVRTF
PVDGVGIPGPAALAVGLLNKDIKHDIVVVHFSGNLVSILLNTCTKELFKH
I* back to topmRNA from alignment at scaffold_13:558802..561042- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5497 ID=mRNA_5497|Name=jgi.p|Nanoce1779_2|631104|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp|location=Sequence derived from alignment at scaffold_13:558802..561042- (Nannochloropsis oceanica)
AGGACTCCTGTCGCGCTTAGGCATGGTCAAATTCTTCACCACCATCGCAA
ACTGCAGGCTTCGCTCCGCTCTGCTTTTGCTCCTGCTGCCGCTCCTCTCT
TTTGTGCTAGACATGGTCGCTAGGGCCGACGGCTCGATAAGTAGCACCAC
TACTGCAACTCCGTTCCCAGAAACTCAAAAATCGCTCGTACAAGGCCAAC
AAAAACAACAAGAGGGACGAAATTATGACAGTCTAGGAGATATCGATCGG
CAAGGGCAGCATGAGAGGCCGCGCAAGTCCGAGGCTTTCCATGCGGAGGA
GGAGGCACTCAACACCCAACGAGCAGGAGCGACGCTGCAGCAGCCACAGC
ACCCTGTGCCCTCCTTCGATAAAGCTATGGACGATTCTGACGATAATCTG
CTGAGCAATTTCGACGCCTTGTTGGCAGAGGTAATGCTGGGCGCGGAAGA
GGTGGGGCTCATGCAAGTAGCCTCCTCGCTCTCTGGAGAAGGAGGCGAGG
CCCTCTATCAAACTTCTATTGCTCCTGCTTCAGGCCTTGGCGACAAGAAA
GCCCAAGAGATGGATAAAAACGCTGATAGCGTGACACTCGGCACTGGCCA
ACCAAGTCTCCACAATGAGCACCACGGCGACCTTGCCGAGGCCCACCACC
GTGCTCTCTCTCACAAGAAAAAGACGGGGTCTGCGGTCTACTATCCCGAC
GGCAACTTCCTGCCAGCCACCGCGGTTGGCGGAGCAGGTGGCTTGGGCGG
CCGTCCTGGCATTGGGCTCGCTCCGTCCGTGCGTCCAGGCATCACTCTCG
GCGTGACACGATTTCGCGATTCGATCGATGCCCGCAATCGCAAGGTAAAG
CGAGGAGGCCATGCCCTGTGCACTAATTTTCGTTTCATACCACCCTTATC
TTTCCCTGCTGAAGGCGTGGGACCCTCGAACGTTGAAATCGGTGATTTGA
ACGGCGATTGTATCAAGGATCTGGTGGTGTCTGCCTCAGGCTCGGACGTG
ATTGTGATCTTTCTAGGGTGTGGGGACGGAACTTTTTTTCCTGGCGTTCG
GTATCCTGTGGGGCCTCCCGGTAGCTTCCCATACCGAGTTCGACTGGCGG
ACGTGAATCATGATGGTCGCTTGGACATTATCACCGCCAATTTGGGCGGG
GCCGCCCTGTCTATTTTGCTTGGGCGCGGCGATGGAACCTTTACCAATGG
ATTTGTTTTTCCTACTGGAGGTGGTGGGCCCGTGGACCTGGCGCTGGGTG
ATTTCAACGGCGACGGGATTCTGGATGTCGCACTGGCGCTCGCCCAATGC
GAGTCGTTGACTATTTTGTTCGGAGACGGTCGAGGGTCCTTTGTGCGGCC
GCTTGAGATTGCACTCGGCTCAGGCTTTCCACTCTCCATTTTGGCAGTAG
ACTTGAATTTGGATGGATTCGCGGATTTGGTCGTCGGCATGTCGGCCTTG
GGTCGGAACTTGGCTGTGCTCACCAGCCTAGGCGACGGTACGTTCCGCCG
GCCTGTGTTGCACGAGCTTGGCAAACATAACAGGCCTGTCAGCCTGGCGG
TGGGATACTTCAACTGTGATCTTTTCCCAGATATCGTTTTAGTGAATGGA
GGATCTGACAATTCTTTGTCGGTGTTGTTGGGCCGCGGTGATGGCAGCTT
CCGCACCCCTAGGAGCTTTTCCGTCTCGCCGGGGTTGGCGCCCATGGCCT
TAGCAGTAGGGGACTTTAACGGGGATCTGATTCCTGATATTGTGACAGCC
AATGCTTTATCTAATGATGTGACAATCCTGCGTGGTAAGTCTTCATGCTA
TGGAGGGAGGCTTGCATGACATAGTTGCTCATTTATGCCCCATCACTTCC
ATTCAAAATCCTTTTAACACAGGACATGGTGACGGAACATTTTCGCGGGT
GCGTACATTTCCAGTAGACGGTGTTGGTATACCAGGTCCCGCGGCACTCG
CGGTCGGACTGCTCAACAAGGACATAAAGCACGACATTGTTGTTGTACAC
TTCTCTGGCAATTTGGTGTCTATCTTACTCAATACATGCACCAAGGAGCT
CTTCAAACACATCTGAAAGGGGAAGAACACTAGGGGGTTTAGGAGGGGTA
GATGCCGGCATCAGTCCCACTCGTGGTTGCGGAATAACCGGCTGCCAACC
AACTACGTACTACCCCGTCACCCGGGGCGGGCTTACTTTATTTGCTCATA
ATATGATAGAAGTAATCGCAACCATGCCGGTGGCAAAGCGC back to topCoding sequence (CDS) from alignment at scaffold_13:558802..561042- >mRNA_5497 ID=mRNA_5497|Name=jgi.p|Nanoce1779_2|631104|organism=Nannochloropsis oceanica|type=CDS|length=3912bp|location=Sequence derived from alignment at scaffold_13:558802..561042- (Nannochloropsis oceanica)
GACATGGTGACGGAACATTTTCGCGGGTGCGTACATTTCCAGTAGACGGT
GTTGGTATACCAGGTCCCGCGGCACTCGCGGTCGGACTGCTCAACAAGGA
CATAAAGCACGACATTGTTGTTGTACACTTCTCTGGCAATTTGGTGTCTA
TCTTACTCAATACATGCACCAAGGAGCTCTTCAAACACATCTGAATGGTC
AAATTCTTCACCACCATCGCAAACTGCAGGCTTCGCTCCGCTCTGCTTTT
GCTCCTGCTGCCGCTCCTCTCTTTTGTGCTAGACATGGTCGCTAGGGCCG
ACGGCTCGATAAGTAGCACCACTACTGCAACTCCGTTCCCAGAAACTCAA
AAATCGCTCGTACAAGGCCAACAAAAACAACAAGAGGGACGAAATTATGA
CAGTCTAGGAGATATCGATCGGCAAGGGCAGCATGAGAGGCCGCGCAAGT
CCGAGGCTTTCCATGCGGAGGAGGAGGCACTCAACACCCAACGAGCAGGA
GCGACGCTGCAGCAGCCACAGCACCCTGTGCCCTCCTTCGATAAAGCTAT
GGACGATTCTGACGATAATCTGCTGAGCAATTTCGACGCCTTGTTGGCAG
AGGTAATGCTGGGCGCGGAAGAGGTGGGGCTCATGCAAGTAGCCTCCTCG
CTCTCTGGAGAAGGAGGCGAGGCCCTCTATCAAACTTCTATTGCTCCTGC
TTCAGGCCTTGGCGACAAGAAAGCCCAAGAGATGGATAAAAACGCTGATA
GCGTGACACTCGGCACTGGCCAACCAAGTCTCCACAATGAGCACCACGGC
GACCTTGCCGAGGCCCACCACCGTGCTCTCTCTCACAAGAAAAAGACGGG
GTCTGCGGTCTACTATCCCGACGGCAACTTCCTGCCAGCCACCGCGGTTG
GCGGAGCAGGTGGCTTGGGCGGCCGTCCTGGCATTGGGCTCGCTCCGTCC
GTGCGTCCAGGCATCACTCTCGGCGTGACACGATTTCGCGATTCGATCGA
TGCCCGCAATCGCAAGGTAAAGCGAGGAGGCCATGCCCTGTGCACTAATT
TTCGTTTCATACCACCCTTATCTTTCCCTGCTGAAGGCGTGGGACCCTCG
AACGTTGAAATCGGTGATTTGAACGGCGATTGTATCAAGGATCTGGTGGT
GTCTGCCTCAGGCTCGGACGTGATTGTGATCTTTCTAGGGTGTGGGGACG
GAACTTTTTTTCCTGGCGTTCGGTATCCTGTGGGGCCTCCCGGTAGCTTC
CCATACCGAGTTCGACTGGCGGACGTGAATCATGATGGTCGCTTGGACAT
TATCACCGCCAATTTGGGCGGGGCCGCCCTGTCTATTTTGCTTGGGCGCG
GCGATGGAACCTTTACCAATGGATTTGTTTTTCCTACTGGAGGTGGTGGG
CCCGTGGACCTGGCGCTGGGTGATTTCAACGGCGACGGGATTCTGGATGT
CGCACTGGCGCTCGCCCAATGCGAGTCGTTGACTATTTTGTTCGGAGACG
GTCGAGGGTCCTTTGTGCGGCCGCTTGAGATTGCACTCGGCTCAGGCTTT
CCACTCTCCATTTTGGCAGTAGACTTGAATTTGGATGGATTCGCGGATTT
GGTCGTCGGCATGTCGGCCTTGGGTCGGAACTTGGCTGTGCTCACCAGCC
TAGGCGACGGTACGTTCCGCCGGCCTGTGTTGCACGAGCTTGGCAAACAT
AACAGGCCTGTCAGCCTGGCGGTGGGATACTTCAACTGTGATCTTTTCCC
AGATATCGTTTTAGTGAATGGAGGATCTGACAATTCTTTGTCGGTGTTGT
TGGGCCGCGGTGATGGCAGCTTCCGCACCCCTAGGAGCTTTTCCGTCTCG
CCGGGGTTGGCGCCCATGGCCTTAGCAGTAGGGGACTTTAACGGGGATCT
GATTCCTGATATTGTGACAGCCAATGCTTTATCTAATGATGTGACAATCC
TGCGTGGACATGGTGACGGAACATTTTCGCGGGTGCGTACATTTCCAGTA
GACGGTGTTGGTATACCAGGTCCCGCGGCACTCGCGGTCGGACTGCTCAA
CAAGGACATAAAGCACGACATTGTTGTTGTACACTTCTCTGGCAATTTGG
TGTCTATCTTACTCAATACATGCACCAAGGAGCTCTTCAAACACATCTGA
ATGGTCAAATTCTTCACCACCATCGCAAACTGCAGGCTTCGCTCCGCTCT
GCTTTTGCTCCTGCTGCCGCTCCTCTCTTTTGTGCTAGACATGGTCGCTA
GGGCCGACGGCTCGATAAGTAGCACCACTACTGCAACTCCGTTCCCAGAA
ACTCAAAAATCGCTCGTACAAGGCCAACAAAAACAACAAGAGGGACGAAA
TTATGACAGTCTAGGAGATATCGATCGGCAAGGGCAGCATGAGAGGCCGC
GCAAGTCCGAGGCTTTCCATGCGGAGGAGGAGGCACTCAACACCCAACGA
GCAGGAGCGACGCTGCAGCAGCCACAGCACCCTGTGCCCTCCTTCGATAA
AGCTATGGACGATTCTGACGATAATCTGCTGAGCAATTTCGACGCCTTGT
TGGCAGAGGTAATGCTGGGCGCGGAAGAGGTGGGGCTCATGCAAGTAGCC
TCCTCGCTCTCTGGAGAAGGAGGCGAGGCCCTCTATCAAACTTCTATTGC
TCCTGCTTCAGGCCTTGGCGACAAGAAAGCCCAAGAGATGGATAAAAACG
CTGATAGCGTGACACTCGGCACTGGCCAACCAAGTCTCCACAATGAGCAC
CACGGCGACCTTGCCGAGGCCCACCACCGTGCTCTCTCTCACAAGAAAAA
GACGGGGTCTGCGGTCTACTATCCCGACGGCAACTTCCTGCCAGCCACCG
CGGTTGGCGGAGCAGGTGGCTTGGGCGGCCGTCCTGGCATTGGGCTCGCT
CCGTCCGTGCGTCCAGGCATCACTCTCGGCGTGACACGATTTCGCGATTC
GATCGATGCCCGCAATCGCAAGGTAAAGCGAGGAGGCCATGCCCTGTGCA
CTAATTTTCGTTTCATACCACCCTTATCTTTCCCTGCTGAAGGCGTGGGA
CCCTCGAACGTTGAAATCGGTGATTTGAACGGCGATTGTATCAAGGATCT
GGTGGTGTCTGCCTCAGGCTCGGACGTGATTGTGATCTTTCTAGGGTGTG
GGGACGGAACTTTTTTTCCTGGCGTTCGGTATCCTGTGGGGCCTCCCGGT
AGCTTCCCATACCGAGTTCGACTGGCGGACGTGAATCATGATGGTCGCTT
GGACATTATCACCGCCAATTTGGGCGGGGCCGCCCTGTCTATTTTGCTTG
GGCGCGGCGATGGAACCTTTACCAATGGATTTGTTTTTCCTACTGGAGGT
GGTGGGCCCGTGGACCTGGCGCTGGGTGATTTCAACGGCGACGGGATTCT
GGATGTCGCACTGGCGCTCGCCCAATGCGAGTCGTTGACTATTTTGTTCG
GAGACGGTCGAGGGTCCTTTGTGCGGCCGCTTGAGATTGCACTCGGCTCA
GGCTTTCCACTCTCCATTTTGGCAGTAGACTTGAATTTGGATGGATTCGC
GGATTTGGTCGTCGGCATGTCGGCCTTGGGTCGGAACTTGGCTGTGCTCA
CCAGCCTAGGCGACGGTACGTTCCGCCGGCCTGTGTTGCACGAGCTTGGC
AAACATAACAGGCCTGTCAGCCTGGCGGTGGGATACTTCAACTGTGATCT
TTTCCCAGATATCGTTTTAGTGAATGGAGGATCTGACAATTCTTTGTCGG
TGTTGTTGGGCCGCGGTGATGGCAGCTTCCGCACCCCTAGGAGCTTTTCC
GTCTCGCCGGGGTTGGCGCCCATGGCCTTAGCAGTAGGGGACTTTAACGG
GGATCTGATTCCTGATATTGTGACAGCCAATGCTTTATCTAATGATGTGA
CAATCCTGCGTG back to top
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