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Properties
| Property Name | Value |
|---|
| TranscriptId | 592814 |
| Track | FilteredModels2 |
| ProteinId | 592728 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:556536..557832 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5496 ID=mRNA_5496|Name=jgi.p|Nanoce1779_2|592728|organism=Nannochloropsis oceanica|type=mRNA|length=1053bp
CAATAGCACAGGGTAGCGCTCATTCCTGCCTTGTGGTTGTCAGGGGAGAG
GGCGCCCTCATTGTTACAAACTGACAGCTCTCTGTCCTTCGCTCAATCAT
CATTCAGCCGCCGCGTGTTCGTCAGATTTTGCTTGCGGCGTGCGGCTTAA
GTTGGCCCTGCCTTGCAAGCGTCAAGCACACAGACTGAGTGAGGATGTCT
AAGTCATTGTCATCGCCTTTCCGAGAGGAGGAGGGGCATGAAGACGATGC
GGAGGAAGAGGTTTTCGCGGACTCCCTTCAGCCTCTACCAGCTCCTTCTC
GGCGTCACACTACCCGATCATCGTTTAACTCGTTTGGGGAAACCCGCACG
GAGGACGACATGCTGCGAATGATTCACACTGACGAAGAGAAAGGAGAAAC
GCGGAAGAGTGGAGGTCTGGGCAGGGACGACGTGGAGGATGAGGAGGAGG
AAGGACGGGGTGAGGAGGAGTACGAGGAAGGAGCAGGCAAGGAAGAGTTG
CAAAGCCTGGTGATGCGTCTTTTGTTGCATTCAGCGGAGGCAGGGGCACC
ACTAGAACCCGAGTTGGAGCAGGATTTAAGGGGGCTCGTGGGTTCGCACT
TGTTTGACGAGATTTTTGAGAGCAGTGGTGGGGTGGAAGAGGGAGGAGGA
GGGAGAGCACAGGATCCCGGCTGCAACGATGGTGGTAATGGTGTTGTACA
GCATGACCTAGCCCTGTGTCGTGCTCGAAATCGTCGAAGTATTAGTGATG
GGAGCGGGGGTAGTATTGGGGGAAGCGGCGATATGCCCAGGAAGCTGGTG
GCGGCGTTGGCTGGGTTGCAGTTAACACCTTCGCTTAATGGCCCAAAGCC
GCAGCTACGGCAGTACTTGAAGACGAGTGGATCAGTGACGCCGACCCGGG
CTACGTGACACTTCGCATCACAGAACAAGCTTTCTTCGACTTGGAAGAAA
GAGCACTCGAGGCGGCCCATGTGGCCTTGACTGCTAGGAGGAAGAAGATG
TTGGCAGTCCAAGGGCAGGTAGGGAAGGAAGAAGTGTCCGGAGGATGGGG
GAG back to topprotein sequence of jgi.p|Nanoce1779_2|592728 >mRNA_5496-protein ID=mRNA_5496-protein|Name=jgi.p|Nanoce1779_2|592728|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MSKSLSSPFREEEGHEDDAEEEVFADSLQPLPAPSRRHTTRSSFNSFGET
RTEDDMLRMIHTDEEKGETRKSGGLGRDDVEDEEEEGRGEEEYEEGAGKE
ELQSLVMRLLLHSAEAGAPLEPELEQDLRGLVGSHLFDEIFESSGGVEEG
GGGRAQDPGCNDGGNGVVQHDLALCRARNRRSISDGSGGSIGGSGDMPRK
LVAALAGLQLTPSLNGPKPQLRQYLKTSGSVTPTRAT* back to topmRNA from alignment at scaffold_13:556536..557832- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5496 ID=mRNA_5496|Name=jgi.p|Nanoce1779_2|592728|organism=Nannochloropsis oceanica|type=mRNA|length=1297bp|location=Sequence derived from alignment at scaffold_13:556536..557832- (Nannochloropsis oceanica)
CAATAGCACAGGGTAGCGCTCATTCCTGCCTTGTGGTTGTCAGGGGAGAG
GGCGCCCTCATTGTTACAAACTGACAGCTCTCTGTCCTTCGCTCAATCAT
CATTCAGCCGCCGCGTGTTCGTCAGATTTTGCTTGCGGCGTGCGGCTTAA
GTTGGCCCTGCCTTGCAAGCGTCAAGCACACAGACTGAGTGAGGATGTCT
AAGTCATTGTCATCGCCTTTCCGAGAGGAGGAGGGGCATGAAGACGATGC
GGAGGAAGAGGTTTTCGCGGACTCCCTTCAGCCTCTACCAGCTCCTTCTC
GGCGTCACACTACCCGATCATCGTTTAACTCGTTTGGGGAAACCCGCACG
GAGGACGACATGCTGCGAATGATTCACACTGACGAAGAGAAAGGAGAAAC
GCGGAAGAGTGGAGGTCTGGGCAGGGACGACGTGGAGGATGAGGAGGAGG
AAGGACGGGGTGAGGAGGAGTACGAGGAAGGAGCAGGCAAGGAAGAGTTG
CAAAGCCTGGTGATGCGTCTTTTGTTGCATTCAGCGGAGGCAGGGGCACC
ACTAGAACCCGAGTTGGAGCAGGATTTAAGGGGGCTCGTGGGTTCGCACT
TGTTTGACGAGATTTTTGAGAGCAGTGGTGGGGTGGAAGAGGGAGGAGGA
GGGAGAGCACAGGATCCCGGCTGCAACGATGGTGGTAATGGTGTTGTACA
GCATGACCTAGCCCTGTGTCGTGCTCGAAATCGTCGAAGTATTAGTGATG
GGAGCGGGGGTAGTATTGGGGGAAGCGGCGATATGCCCAGGAAGCTGGTG
GCGGCGTTGGCTGGGTTGCAGTTAACACCTTCGCTTAATGTGGGTATGGA
GGGATCGGGCAGCGACGGCAGTAGCGGCGGTGGTGCTAATGGTGGTACTC
GTGCTGGTGGTTCGCATCGGGAGAGGGAGCGGAGGAAGTCAATGGAGGAC
AAAGAGGAGGACGAAATTTGCCTACTCCCAACCCCTGCTTCCGCCCCCTC
CTTGTCCACCTCTTGCCCCTCCTCTCCCTCCTCCTCCTCTCACATCACCA
CCGCCACTACCATCAACCGTCCAAAAATACCAGGGCCCAAAGCCGCAGCT
ACGGCAGTACTTGAAGACGAGTGGATCAGTGACGCCGACCCGGGCTACGT
GACACTTCGCATCACAGAACAAGCTTTCTTCGACTTGGAAGAAAGAGCAC
TCGAGGCGGCCCATGTGGCCTTGACTGCTAGGAGGAAGAAGATGTTGGCA
GTCCAAGGGCAGGTAGGGAAGGAAGAAGTGTCCGGAGGATGGGGGAG back to topCoding sequence (CDS) from alignment at scaffold_13:556536..557832- >mRNA_5496 ID=mRNA_5496|Name=jgi.p|Nanoce1779_2|592728|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_13:556536..557832- (Nannochloropsis oceanica)
GGCCCAAAGCCGCAGCTACGGCAGTACTTGAAGACGAGTGGATCAGTGAC
GCCGACCCGGGCTACGTGAATGTCTAAGTCATTGTCATCGCCTTTCCGAG
AGGAGGAGGGGCATGAAGACGATGCGGAGGAAGAGGTTTTCGCGGACTCC
CTTCAGCCTCTACCAGCTCCTTCTCGGCGTCACACTACCCGATCATCGTT
TAACTCGTTTGGGGAAACCCGCACGGAGGACGACATGCTGCGAATGATTC
ACACTGACGAAGAGAAAGGAGAAACGCGGAAGAGTGGAGGTCTGGGCAGG
GACGACGTGGAGGATGAGGAGGAGGAAGGACGGGGTGAGGAGGAGTACGA
GGAAGGAGCAGGCAAGGAAGAGTTGCAAAGCCTGGTGATGCGTCTTTTGT
TGCATTCAGCGGAGGCAGGGGCACCACTAGAACCCGAGTTGGAGCAGGAT
TTAAGGGGGCTCGTGGGTTCGCACTTGTTTGACGAGATTTTTGAGAGCAG
TGGTGGGGTGGAAGAGGGAGGAGGAGGGAGAGCACAGGATCCCGGCTGCA
ACGATGGTGGTAATGGTGTTGTACAGCATGACCTAGCCCTGTGTCGTGCT
CGAAATCGTCGAAGTATTAGTGATGGGAGCGGGGGTAGTATTGGGGGAAG
CGGCGATATGCCCAGGAAGCTGGTGGCGGCGTTGGCTGGGTTGCAGTTAA
CACCTTCGCTTAATGGCCCAAAGCCGCAGCTACGGCAGTACTTGAAGACG
AGTGGATCAGTGACGCCGACCCGGGCTACGTGAATGTCTAAGTCATTGTC
ATCGCCTTTCCGAGAGGAGGAGGGGCATGAAGACGATGCGGAGGAAGAGG
TTTTCGCGGACTCCCTTCAGCCTCTACCAGCTCCTTCTCGGCGTCACACT
ACCCGATCATCGTTTAACTCGTTTGGGGAAACCCGCACGGAGGACGACAT
GCTGCGAATGATTCACACTGACGAAGAGAAAGGAGAAACGCGGAAGAGTG
GAGGTCTGGGCAGGGACGACGTGGAGGATGAGGAGGAGGAAGGACGGGGT
GAGGAGGAGTACGAGGAAGGAGCAGGCAAGGAAGAGTTGCAAAGCCTGGT
GATGCGTCTTTTGTTGCATTCAGCGGAGGCAGGGGCACCACTAGAACCCG
AGTTGGAGCAGGATTTAAGGGGGCTCGTGGGTTCGCACTTGTTTGACGAG
ATTTTTGAGAGCAGTGGTGGGGTGGAAGAGGGAGGAGGAGGGAGAGCACA
GGATCCCGGCTGCAACGATGGTGGTAATGGTGTTGTACAGCATGACCTAG
CCCTGTGTCGTGCTCGAAATCGTCGAAGTATTAGTGATGGGAGCGGGGGT
AGTATTGGGGGAAGCGGCGATATGCCCAGGAAGCTGGTGGCGGCGTTGGC
TGGGTTGCAGTTAACACCTTCGCTTAAT back to top
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