jgi.p|Nanoce1779_2|592720, mRNA_5493 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592720
Unique Name	mRNA_5493
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2401
Alignment location	scaffold_13:548753..551153 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592806
Track	FilteredModels2
ProteinId	592720

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:548753..551153 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592720	gene_5493	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592720	mRNA_5493-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5493	CDS_5493	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:548753..551153+
coding sequence from alignment at scaffold_13:548753..551153+

mRNA sequence

>mRNA_5493 ID=mRNA_5493|Name=jgi.p|Nanoce1779_2|592720|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp
ACAGGCTGGTGGCATCAACCTCTTGACACCGCCACCTGACAGCAGAAAGA
AGAAGCTTCACGGTCCAGCCCAACTCCCGCGCATTGCTCCCACACGCCCC
ACACGACAACCACGAGGCCTCCTCGTCTCCTCGTCTCCTCAGTTTCTCAC
TCACGTCAGTCACACAAGCCATGCCGACCTATGCGGACCCTCCCAGGTCG
CGCGCCTACCAGCACGAAAGCTCCTCCGACAGCATTGATAATCCGATCCG
CAGCACCCACGCCTCCAGCCCACCCGACTATTTCAATCAAAACTCCCTCC
GTGAGTCCCCCTCCCTCCACTCCTCATCCTCAGAATCCGAGATGGACTCT
CAGAGCAATGGCAATGGCAGGACCCCTCAACAGCGGCGAGGCGACATTCA
AAGGCAGACAAACAACCCTTCCGCCTCCGGCACGAACGGCACCCCCCGAG
GAGCATTCAAGAGCACAATCTTCTCCATGGCCCACGCTGTCGTCCTCTGC
TGGCTCGTGATGGCCATGTCCTTCGGCATCAATATTTTGAATTTCCTCGT
TTTTGTAACCGTCCGTCCTTGGTCCCGCCTGACGGCCCGAAGGCTCATCG
GTCACTGGTGGCAACGGATGTGGGTCTCAGTAATGAGCTACTTGCTCCCT
AAGAGCGAGATGATTCTGACAGGGGACATCGTGCTTAACACTGTGGATTC
CTCTCGCCCGGCCATCATCATCGCGAATCACCAGGTGGATGCGGATTTTT
GGTATGTCTGGGAAGTGGCGCGGGCCTACGGAATGCATGGACGGTTGAAG
ATCATTTTGAAAGCCGATTTGGCTGTGGTCCCCATCGTGGGCTGGGGGAT
GAAACAATTTGAATTTTGTTTTTTGCAACGCAATTGGCAGAGGGACCGGA
GGGCGTTCACGCGCTTGTTGTCGTCGTTTGTCGAGGACGGGTATAAGTGT
GCCTTGCTCCTCTTTCCAGAGGGCACGACCATCAACACTGAAGCTGTCAC
CAAGTCCCACCGCTTCGGCCGTGAGCAGAAGAGGCCTCACCTCGACCATT
GCATCCTACCGCGTTCCACGGGCTTTGCGGCTTTGGTCGAGACAATGTGC
CAGTCCCCCCATGGCCATTCTCCTGTTATTTACGATCTGACCGTCGCCTA
TCACGGTTACTCAGGCGAAGTTCCCACCTATGAGATGGGCTACGACCGAG
AACAAGACATGGACGTCCCGAACGTGTTCAAAATGATGCAGGGACGGGCA
TGTCCAAAGGTTCATGTCCACGTCAAGACGTACGAAGTCGATGAGGCCTT
GGTTAATAATCCCGAGCAGTGGTTGGATGCTCGATGGTTGGAAAAAGACG
CGCTGCTGGAACGGTTTATTCAGACGCAGAGTTTTAGGGGGGAGAAGGAG
GGAGGGACACGGATCATTCATCCTCAGGGGAGCTTGGCCTCGCTGCTTTT
TTTGTTGATGTTGCCGCTGATTATCACCGTCCTCCTTCCTGCCCTGCTCT
TGATCACTTTGGTGGCCTGGCCTGTGATTCTTCTGGCGGGCACGCTCAAC
TTTCTGAACTTTGTCTCGCGTTCGGCCATGGGTGTGGTAGTCGGGAGCAG
CAGCAGCCGTGGGTCTTTCTCCACGTCTTGGCATCAGTCCTCCCAACACC
GGCACCAGCACCAGCAACGGGTCAGTGGCAATAGCACCAGTAGCACCAGT
ACCAGCAACAGTACCAGCAGTAGCATTGGTCGGAAGGAAGGGGCATTGAA
CTGCAGGCGAAGTTCTCGCCGAAGCCCCAGCCGTGAGGGATGTGGCCACG
CCAATGGAGAAGGACCGAGCTGTCCTCTCCTCTCTGTAAGCCTGCCGCCT
CTCCCTGCCGCAGCTGCTGCTGCCGCTCCTGCTGCTCCTGCTTCTTCGGC
TCCATCTTCTCCGCTATTGGGGAGCACGCCGTCGCCACGCCGGTCCCCAC
GGTGGAAGACTCCGGCGGGGATATCCCCTGTAGTGCAGAGCTACGGGAAC
AGGAAGGGGAAGGAAGGAGGATGGGGTCTAATGGCTGCGGCGGCCGCAGC
GGCAACGACGGAAGAGGAGGATCGGTACTAGGTGGCGTTGGGATGAAACA
GGAAGGGAAGGGAGTGAAGAGGAGGAAATTGTTATTTATTGATTGGTCGA
AGGGGAAGGAACTTCCAGAATGTTGGGGGACTTGGTTTGCGGATGGGATG
GAGGGAGAATGTAGGTGTATGGAATATGAAGACAGGAAGAGCATGGGTGC
GTGGGTAAGACCGGCTGGAGAGAACAAAACGGAAAGTACCCTTGTCGGTA
GCGTAGAGTGCGGTGAGCGAAGCGTGGACACGATTCAACTGAACGAAAGT
TTTTAAAACATGCGATTGAATGACCCAAGAAAAAGAAAGAGAGAAGTGAA
C

protein sequence of jgi.p|Nanoce1779_2|592720

>mRNA_5493-protein ID=mRNA_5493-protein|Name=jgi.p|Nanoce1779_2|592720|organism=Nannochloropsis oceanica|type=polypeptide|length=637bp
MPTYADPPRSRAYQHESSSDSIDNPIRSTHASSPPDYFNQNSLRESPSLH
SSSSESEMDSQSNGNGRTPQQRRGDIQRQTNNPSASGTNGTPRGAFKSTI
FSMAHAVVLCWLVMAMSFGINILNFLVFVTVRPWSRLTARRLIGHWWQRM
WVSVMSYLLPKSEMILTGDIVLNTVDSSRPAIIIANHQVDADFWYVWEVA
RAYGMHGRLKIILKADLAVVPIVGWGMKQFEFCFLQRNWQRDRRAFTRLL
SSFVEDGYKCALLLFPEGTTINTEAVTKSHRFGREQKRPHLDHCILPRST
GFAALVETMCQSPHGHSPVIYDLTVAYHGYSGEVPTYEMGYDREQDMDVP
NVFKMMQGRACPKVHVHVKTYEVDEALVNNPEQWLDARWLEKDALLERFI
QTQSFRGEKEGGTRIIHPQGSLASLLFLLMLPLIITVLLPALLLITLVAW
PVILLAGTLNFLNFVSRSAMGVVVGSSSSRGSFSTSWHQSSQHRHQHQQR
VSGNSTSSTSTSNSTSSSIGRKEGALNCRRSSRRSPSREGCGHANGEGPS
CPLLSVSLPPLPAAAAAAAPAAPASSAPSSPLLGSTPSPRRSPRWKTPAG
ISPVVQSYGNRKGKEGGWGLMAAAAAAATTEEEDRY*

mRNA from alignment at scaffold_13:548753..551153+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5493 ID=mRNA_5493|Name=jgi.p|Nanoce1779_2|592720|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp|location=Sequence derived from alignment at scaffold_13:548753..551153+ (Nannochloropsis oceanica)
ACAGGCTGGTGGCATCAACCTCTTGACACCGCCACCTGACAGCAGAAAGA
AGAAGCTTCACGGTCCAGCCCAACTCCCGCGCATTGCTCCCACACGCCCC
ACACGACAACCACGAGGCCTCCTCGTCTCCTCGTCTCCTCAGTTTCTCAC
TCACGTCAGTCACACAAGCCATGCCGACCTATGCGGACCCTCCCAGGTCG
CGCGCCTACCAGCACGAAAGCTCCTCCGACAGCATTGATAATCCGATCCG
CAGCACCCACGCCTCCAGCCCACCCGACTATTTCAATCAAAACTCCCTCC
GTGAGTCCCCCTCCCTCCACTCCTCATCCTCAGAATCCGAGATGGACTCT
CAGAGCAATGGCAATGGCAGGACCCCTCAACAGCGGCGAGGCGACATTCA
AAGGCAGACAAACAACCCTTCCGCCTCCGGCACGAACGGCACCCCCCGAG
GAGCATTCAAGAGCACAATCTTCTCCATGGCCCACGCTGTCGTCCTCTGC
TGGCTCGTGATGGCCATGTCCTTCGGCATCAATATTTTGAATTTCCTCGT
TTTTGTAACCGTCCGTCCTTGGTCCCGCCTGACGGCCCGAAGGCTCATCG
GTCACTGGTGGCAACGGATGTGGGTCTCAGTAATGAGCTACTTGCTCCCT
AAGAGCGAGATGATTCTGACAGGGGACATCGTGCTTAACACTGTGGATTC
CTCTCGCCCGGCCATCATCATCGCGAATCACCAGGTGGATGCGGATTTTT
GGTATGTCTGGGAAGTGGCGCGGGCCTACGGAATGCATGGACGGTTGAAG
ATCATTTTGAAAGCCGATTTGGCTGTGGTCCCCATCGTGGGCTGGGGGAT
GAAACAATTTGAATTTTGTTTTTTGCAACGCAATTGGCAGAGGGACCGGA
GGGCGTTCACGCGCTTGTTGTCGTCGTTTGTCGAGGACGGGTATAAGTGT
GCCTTGCTCCTCTTTCCAGAGGGCACGACCATCAACACTGAAGCTGTCAC
CAAGTCCCACCGCTTCGGCCGTGAGCAGAAGAGGCCTCACCTCGACCATT
GCATCCTACCGCGTTCCACGGGCTTTGCGGCTTTGGTCGAGACAATGTGC
CAGTCCCCCCATGGCCATTCTCCTGTTATTTACGATCTGACCGTCGCCTA
TCACGGTTACTCAGGCGAAGTTCCCACCTATGAGATGGGCTACGACCGAG
AACAAGACATGGACGTCCCGAACGTGTTCAAAATGATGCAGGGACGGGCA
TGTCCAAAGGTTCATGTCCACGTCAAGACGTACGAAGTCGATGAGGCCTT
GGTTAATAATCCCGAGCAGTGGTTGGATGCTCGATGGTTGGAAAAAGACG
CGCTGCTGGAACGGTTTATTCAGACGCAGAGTTTTAGGGGGGAGAAGGAG
GGAGGGACACGGATCATTCATCCTCAGGGGAGCTTGGCCTCGCTGCTTTT
TTTGTTGATGTTGCCGCTGATTATCACCGTCCTCCTTCCTGCCCTGCTCT
TGATCACTTTGGTGGCCTGGCCTGTGATTCTTCTGGCGGGCACGCTCAAC
TTTCTGAACTTTGTCTCGCGTTCGGCCATGGGTGTGGTAGTCGGGAGCAG
CAGCAGCCGTGGGTCTTTCTCCACGTCTTGGCATCAGTCCTCCCAACACC
GGCACCAGCACCAGCAACGGGTCAGTGGCAATAGCACCAGTAGCACCAGT
ACCAGCAACAGTACCAGCAGTAGCATTGGTCGGAAGGAAGGGGCATTGAA
CTGCAGGCGAAGTTCTCGCCGAAGCCCCAGCCGTGAGGGATGTGGCCACG
CCAATGGAGAAGGACCGAGCTGTCCTCTCCTCTCTGTAAGCCTGCCGCCT
CTCCCTGCCGCAGCTGCTGCTGCCGCTCCTGCTGCTCCTGCTTCTTCGGC
TCCATCTTCTCCGCTATTGGGGAGCACGCCGTCGCCACGCCGGTCCCCAC
GGTGGAAGACTCCGGCGGGGATATCCCCTGTAGTGCAGAGCTACGGGAAC
AGGAAGGGGAAGGAAGGAGGATGGGGTCTAATGGCTGCGGCGGCCGCAGC
GGCAACGACGGAAGAGGAGGATCGGTACTAGGTGGCGTTGGGATGAAACA
GGAAGGGAAGGGAGTGAAGAGGAGGAAATTGTTATTTATTGATTGGTCGA
AGGGGAAGGAACTTCCAGAATGTTGGGGGACTTGGTTTGCGGATGGGATG
GAGGGAGAATGTAGGTGTATGGAATATGAAGACAGGAAGAGCATGGGTGC
GTGGGTAAGACCGGCTGGAGAGAACAAAACGGAAAGTACCCTTGTCGGTA
GCGTAGAGTGCGGTGAGCGAAGCGTGGACACGATTCAACTGAACGAAAGT
TTTTAAAACATGCGATTGAATGACCCAAGAAAAAGAAAGAGAGAAGTGAA
C

Coding sequence (CDS) from alignment at scaffold_13:548753..551153+

>mRNA_5493 ID=mRNA_5493|Name=jgi.p|Nanoce1779_2|592720|organism=Nannochloropsis oceanica|type=CDS|length=1911bp|location=Sequence derived from alignment at scaffold_13:548753..551153+ (Nannochloropsis oceanica)
ATGCCGACCTATGCGGACCCTCCCAGGTCGCGCGCCTACCAGCACGAAAG
CTCCTCCGACAGCATTGATAATCCGATCCGCAGCACCCACGCCTCCAGCC
CACCCGACTATTTCAATCAAAACTCCCTCCGTGAGTCCCCCTCCCTCCAC
TCCTCATCCTCAGAATCCGAGATGGACTCTCAGAGCAATGGCAATGGCAG
GACCCCTCAACAGCGGCGAGGCGACATTCAAAGGCAGACAAACAACCCTT
CCGCCTCCGGCACGAACGGCACCCCCCGAGGAGCATTCAAGAGCACAATC
TTCTCCATGGCCCACGCTGTCGTCCTCTGCTGGCTCGTGATGGCCATGTC
CTTCGGCATCAATATTTTGAATTTCCTCGTTTTTGTAACCGTCCGTCCTT
GGTCCCGCCTGACGGCCCGAAGGCTCATCGGTCACTGGTGGCAACGGATG
TGGGTCTCAGTAATGAGCTACTTGCTCCCTAAGAGCGAGATGATTCTGAC
AGGGGACATCGTGCTTAACACTGTGGATTCCTCTCGCCCGGCCATCATCA
TCGCGAATCACCAGGTGGATGCGGATTTTTGGTATGTCTGGGAAGTGGCG
CGGGCCTACGGAATGCATGGACGGTTGAAGATCATTTTGAAAGCCGATTT
GGCTGTGGTCCCCATCGTGGGCTGGGGGATGAAACAATTTGAATTTTGTT
TTTTGCAACGCAATTGGCAGAGGGACCGGAGGGCGTTCACGCGCTTGTTG
TCGTCGTTTGTCGAGGACGGGTATAAGTGTGCCTTGCTCCTCTTTCCAGA
GGGCACGACCATCAACACTGAAGCTGTCACCAAGTCCCACCGCTTCGGCC
GTGAGCAGAAGAGGCCTCACCTCGACCATTGCATCCTACCGCGTTCCACG
GGCTTTGCGGCTTTGGTCGAGACAATGTGCCAGTCCCCCCATGGCCATTC
TCCTGTTATTTACGATCTGACCGTCGCCTATCACGGTTACTCAGGCGAAG
TTCCCACCTATGAGATGGGCTACGACCGAGAACAAGACATGGACGTCCCG
AACGTGTTCAAAATGATGCAGGGACGGGCATGTCCAAAGGTTCATGTCCA
CGTCAAGACGTACGAAGTCGATGAGGCCTTGGTTAATAATCCCGAGCAGT
GGTTGGATGCTCGATGGTTGGAAAAAGACGCGCTGCTGGAACGGTTTATT
CAGACGCAGAGTTTTAGGGGGGAGAAGGAGGGAGGGACACGGATCATTCA
TCCTCAGGGGAGCTTGGCCTCGCTGCTTTTTTTGTTGATGTTGCCGCTGA
TTATCACCGTCCTCCTTCCTGCCCTGCTCTTGATCACTTTGGTGGCCTGG
CCTGTGATTCTTCTGGCGGGCACGCTCAACTTTCTGAACTTTGTCTCGCG
TTCGGCCATGGGTGTGGTAGTCGGGAGCAGCAGCAGCCGTGGGTCTTTCT
CCACGTCTTGGCATCAGTCCTCCCAACACCGGCACCAGCACCAGCAACGG
GTCAGTGGCAATAGCACCAGTAGCACCAGTACCAGCAACAGTACCAGCAG
TAGCATTGGTCGGAAGGAAGGGGCATTGAACTGCAGGCGAAGTTCTCGCC
GAAGCCCCAGCCGTGAGGGATGTGGCCACGCCAATGGAGAAGGACCGAGC
TGTCCTCTCCTCTCTGTAAGCCTGCCGCCTCTCCCTGCCGCAGCTGCTGC
TGCCGCTCCTGCTGCTCCTGCTTCTTCGGCTCCATCTTCTCCGCTATTGG
GGAGCACGCCGTCGCCACGCCGGTCCCCACGGTGGAAGACTCCGGCGGGG
ATATCCCCTGTAGTGCAGAGCTACGGGAACAGGAAGGGGAAGGAAGGAGG
ATGGGGTCTAATGGCTGCGGCGGCCGCAGCGGCAACGACGGAAGAGGAGG
ATCGGTACTAG

Synonyms

Publications