Properties
Property Name | Value |
TranscriptId | 556678 |
Track | FilteredModels2 |
ProteinId | 556592 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_13 | supercontig | scaffold_13:545301..547495 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5492 ID=mRNA_5492|Name=jgi.p|Nanoce1779_2|556592|organism=Nannochloropsis oceanica|type=mRNA|length=1249bp GTGTCTTCTCTATTTTCTTGCATGTGACCTTTTCATCCTTAGCCTCCTCT CGTCCCCCTGATCAGACAGCAACAGCCGGAAATTGCGCCACAAGAAATAA CCACAAACTCTTAACCCGCGAGGCAACGACCGCAACAAGATGGCGCAACG TGTGGTGGATGCGTTCAACCGCTTTGTCGATCAGAAAGTGGTTCCTCGAG TCCAGCCAATCGTCGAAAAGGACATGATGCCGGACCACCTAATCCGCCTT GGCATTCGCTCCATGCTCCGTGACATGCTCGCGGAGTTCAGCAGCCGCGG CCTCGAGGGGACAATGGTCGCCAAACAAGCGTACATCGACGAACTTAAAT CCCTGCCCATCGCTATTGACACCAACGCAGCCAACATCCAACATTACGAA GTGCCCACTTCCTTCTACAAACTAGTTCTGGGGCCGTACATGAAGTACTC CTGCGGTCTTTGGCCATCTTCCAACACGTCTTTCCAGGATTCCGAGACAG AAATGCTGGAGCTCTACTGTCAACGAGCTGAGCTGGAGGATGGGATGAAA ATTCTAGATCTGGGATGTGGATGGGGCTCGGTGTCGCTCTTCGTGGCAAA GAAATACCCTCGTAGTCAGATTTTTTCTCTGAGCAATTCCGCCACCCAGA GGGAGTATATAGAGAACGAGGCTCAAAAGAGGGGGTTGACAAACATAACT GTGTGGACGGCGGATATCAACGGCAGTGCGACGGACGCGGATTTGTTTGA CAGGGTGATATCGATCGAGATGTTCGAACACATGAAGAACTACCAGAAAT TGCTCGCTAAGGTTTCGTCATGGCTGCGGCCGGGCGGAAAGCTATTCGTG CACATTTTCACGCATGCCACCACGGCCTACCATTTCGACAAGAGCTGGAT GGCGGAAAACTTTTTTACGGGCGGCCAGATGCCTTCGCAGGACCTCCTCC TTTACTTCCAGCAAGACTTGAAGATCGAGGCGCAGTGGGTGGTGAATGGG AAGCACTACAGCAAGACGAACGCCGCCTGGCTCGCAAACCTGGATAAGAA TAAGACGGAGGCGAAGGCTCTGCTGGCCAGTATCCACGGTTCAGAGAAAG CGACCAAGGCCTTCGTGGACTGGCGGCTCTTCTTTCTGACTCTGGTGGAG TGTTTTGCCATGGACGACGGCAATCAGTGGTCGGTCAATTTATACCGGTT TGTAAAACCTCCTGCGGGGGGTAATGGTCGCACAGGTGGGAGTGCTTGA back to topprotein sequence of jgi.p|Nanoce1779_2|556592 >mRNA_5492-protein ID=mRNA_5492-protein|Name=jgi.p|Nanoce1779_2|556592|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp MAQRVVDAFNRFVDQKVVPRVQPIVEKDMMPDHLIRLGIRSMLRDMLAEF SSRGLEGTMVAKQAYIDELKSLPIAIDTNAANIQHYEVPTSFYKLVLGPY MKYSCGLWPSSNTSFQDSETEMLELYCQRAELEDGMKILDLGCGWGSVSL FVAKKYPRSQIFSLSNSATQREYIENEAQKRGLTNITVWTADINGSATDA DLFDRVISIEMFEHMKNYQKLLAKVSSWLRPGGKLFVHIFTHATTAYHFD KSWMAENFFTGGQMPSQDLLLYFQQDLKIEAQWVVNGKHYSKTNAAWLAN LDKNKTEAKALLASIHGSEKATKAFVDWRLFFLTLVECFAMDDGNQWSVN LYRFVKPPAGGNGRTGGSA* back to topmRNA from alignment at scaffold_13:545301..547495+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5492 ID=mRNA_5492|Name=jgi.p|Nanoce1779_2|556592|organism=Nannochloropsis oceanica|type=mRNA|length=2195bp|location=Sequence derived from alignment at scaffold_13:545301..547495+ (Nannochloropsis oceanica) GTGTCTTCTCTATTTTCTTGCATGTGACCTTTTCATCCTTAGCCTCCTCT
CGTCCCCCTGATCAGACAGCAACAGCCGGAAATTGCGCCACAAGAAATAA
CCACAAACTCTTAACCCGCGAGGCAACGACCGCAACAAGATGGCGCAACG
TGTGGTGGATGCGTTCAACCGCTTTGTCGATCAGAAAGTGGTTCCTCGAG
TCCAGCCAATCGTCGAAAAGGACATGATGCCGGACCACCTAATCCGCCTT
GGTAAGTACTGCGTGCATCCCAACCCCATGCCCAGGCAGTGACCAGCTCC
TCCGTTCCATTCGACGATTTGCCCATCATTCATGTATACCGTGAAAATCA
AATTCTTGCTTTGGGAAGGGCGTAGAGATGATGTCTGGCCCTCCGTCTTT
TTTAATGGCGAGACGCTCACTCAAATGTCTAGGCGACCAATTATTTGGCA
AATTCAGCCCATCCCCGTCATCAGTCTACACGCGACAAATGCCAAGTACC
TCTCGACCCTCACTACCGTCACGTATTCCCTCTCTCCATGCTACACGCCC
TCAAACCCAGGCATTCGCTCCATGCTCCGTGACATGCTCGCGGAGTTCAG
CAGCCGCGGCCTCGAGGGGACAATGGTCGCCAAACAAGCGTACATCGACG
AACTTAAATCCCTGCCCATCGCTATTGACACCAACGCAGCCAACATCCAA
CATTACGAAGTGCCCACTTCCTTCTACAAACTAGTTCTGGGGCCGTACAT
GAAGTACTCCTGCGGTCTTTGGCCATCTTCCAACACGTCTTTCCAGGATT
CCGAGACAGAAATGCTGGAGCTCTACTGTCAACGAGCTGAGCTGGAGGAT
GGGATGAAAATTCTAGATCTGGGATGTGGATGGGGCTCGGTGTCGCTCTT
CGTGGCAAAGAAATACCCTCGTAGTCAGATTTTTTCTCTGAGCAATTCCG
CCACCCAGAGGGAGTATATAGAGAACGAGGCTCAAAAGAGGGGGTTGACA
AACATAACTGTGTGGACGGCGGATATCAACGGGTTTGAAATTCCGAGGAC
AACGGGCGCGGGAGGAGGGGGGGGAGGGGCGGGTGGGTTGTTGAAGGCCT
TGATGAAGAAGGCGAGTTTGTCGAGGGTGGCAGCGGAGGAGCCGGGGGAG
GAAGTGTTGGGTGCCTCATCGCCTACCACTCCCTATACCCCAGTAACGAC
AGCATCAGCAGATACAACAAAAGGAGCTGCAGCATCAAGCAGTGCGACGG
ACGCGGATTTGTTTGACAGGGTGATATCGATCGAGATGTTCGAACACATG
AAGAACTACCAGAAATTGCTCGCTAAGGTTTCGTCATGGCTGCGGCCGGG
CGGAAAGCTATTCGTGCACATTTTCACGCATGCCACCACGGCCTACCATT
TCGACAAGAGCTGGATGGCGGAAAACTTTTTTACGGGCGGTAGGTGCCGA
GGAAGGGAGGGAGTGAGCGAGGAGGGTGGAGAAGGTGAGCAGGAAGATGT
CTTTTGACTTTTGATCGAGCCATTGATATCCTCACCTTCTCCTTTTCTTT
CTTGTATGTGTTCGTTTGTTTCATGTCGGACAGGCCAGATGCCTTCGCAG
GACCTCCTCCTTTACTTCCAGCAAGACTTGAAGATCGAGGCGCAGTGGGT
GGTGAATGGGAAGCACTACAGCAAGACGAACGCCGCCTGGCTCGCAAACC
TGGATAAGAATAAGACGGAGGTACGGGATGCTTTCAGAGGGATGTGGGTA
GAGACACAGGTGCTGGGTATTTGAGAAGGAGGAAAAGGAGGAGGGTTGGA
TGGGAGAAAAGCGAGGAAGGAGGAGGAAGAAGGATGAGGATGGAGGAGGA
ACAAGACCTCTTTTCCCGATTATTGCTATCGTGAAACACACAACATTCGT
CTGATAAAAATGCATTTTAAAATGTCTTTTCGTCTTGTCGCGGGAGTACC
CTATTCACCAACCCTCTCGCCTTGATCCTCCCATTCACACATACACCCCC
TGTCAGGCGAAGGCTCTGCTGGCCAGTATCCACGGTTCAGAGAAAGCGAC
CAAGGCCTTCGTGGACTGGCGGCTCTTCTTTCTGACTCTGGTGGAGTGTT
TTGCCATGGACGACGGCAATCAGTGGTCGGTCAATTTATACCGGTTTGTA
AAACCTCCTGCGGGGGGTAATGGTCGCACAGGTGGGAGTGCTTGA back to topCoding sequence (CDS) from alignment at scaffold_13:545301..547495+ >mRNA_5492 ID=mRNA_5492|Name=jgi.p|Nanoce1779_2|556592|organism=Nannochloropsis oceanica|type=CDS|length=5550bp|location=Sequence derived from alignment at scaffold_13:545301..547495+ (Nannochloropsis oceanica) ATGGCGCAACGTGTGGTGGATGCGTTCAACCGCTTTGTCGATCAGAAAGT GGTTCCTCGAGTCCAGCCAATCGTCGAAAAGGACATGATGCCGGACCACC TAATCCGCCTTGGCATTCGCTCCATGCTCCGTGACATGCTCGCGGAGTTC AGCAGCCGCGGCCTCGAGGGGACAATGGTCGCCAAACAAGCGTACATCGA CGAACTTAAATCCCTGCCCATCGCTATTGACACCAACGCAGCCAACATCC AACATTACGAAGTGCCCACTTCCTTCTACAAACTAGTTCTGGGGCCGTAC ATGAAGTACTCCTGCGGTCTTTGGCCATCTTCCAACACGTCTTTCCAGGA TTCCGAGACAGAAATGCTGGAGCTCTACTGTCAACGAGCTGAGCTGGAGG ATGGGATGAAAATTCTAGATCTGGGATGTGGATGGGGCTCGGTGTCGCTC TTCGTGGCAAAGAAATACCCTCGTAGTCAGATTTTTTCTCTGAGCAATTC CGCCACCCAGAGGGAGTATATAGAGAACGAGGCTCAAAAGAGGGGGTTGA CAAACATAACTGTGTGGACGGCGGATATCAACGGCAGTGCGACGGACGCG GATTTGTTTGACAGGGTGATATCGATCGAGATGTTCGAACACATGAAGAA CTACCAGAAATTGCTCGCTAAGGTTTCGTCATGGCTGCGGCCGGGCGGAA AGCTATTCGTGCACATTTTCACGCATGCCACCACGGCCTACCATTTCGAC AAGAGCTGGATGGCGGAAAACTTTTTTACGGGCGGCCAGATGCCTTCGCA GGACCTCCTCCTTTACTTCCAGCAAGACTTGAAGATCGAGGCGCAGTGGG TGGTGAATGGGAAGCACTACAGCAAGACGAACGCCGCCTGGCTCGCAAAC CTGGATAAGAATAAGACGGAGGCGAAGGCTCTGCTGGCCAGTATCCACGG TTCAGAGAAAGCGACCAAGGCCTTCGTGGACTGGCGGCTCTTCTTTCTGA CTCTGGTGGAGTGTTTTGCCATGGACGACGGCAATCAGTGGTCGGTCAAT TTATACCGGTTTGTAAAACCTCCTGCGGGGGGTAATGGTCGCACAGGTGG GAGTGCTTGAATGGCGCAACGTGTGGTGGATGCGTTCAACCGCTTTGTCG ATCAGAAAGTGGTTCCTCGAGTCCAGCCAATCGTCGAAAAGGACATGATG CCGGACCACCTAATCCGCCTTGGCATTCGCTCCATGCTCCGTGACATGCT CGCGGAGTTCAGCAGCCGCGGCCTCGAGGGGACAATGGTCGCCAAACAAG CGTACATCGACGAACTTAAATCCCTGCCCATCGCTATTGACACCAACGCA GCCAACATCCAACATTACGAAGTGCCCACTTCCTTCTACAAACTAGTTCT GGGGCCGTACATGAAGTACTCCTGCGGTCTTTGGCCATCTTCCAACACGT CTTTCCAGGATTCCGAGACAGAAATGCTGGAGCTCTACTGTCAACGAGCT GAGCTGGAGGATGGGATGAAAATTCTAGATCTGGGATGTGGATGGGGCTC GGTGTCGCTCTTCGTGGCAAAGAAATACCCTCGTAGTCAGATTTTTTCTC TGAGCAATTCCGCCACCCAGAGGGAGTATATAGAGAACGAGGCTCAAAAG AGGGGGTTGACAAACATAACTGTGTGGACGGCGGATATCAACGGCAGTGC GACGGACGCGGATTTGTTTGACAGGGTGATATCGATCGAGATGTTCGAAC ACATGAAGAACTACCAGAAATTGCTCGCTAAGGTTTCGTCATGGCTGCGG CCGGGCGGAAAGCTATTCGTGCACATTTTCACGCATGCCACCACGGCCTA CCATTTCGACAAGAGCTGGATGGCGGAAAACTTTTTTACGGGCGGCCAGA TGCCTTCGCAGGACCTCCTCCTTTACTTCCAGCAAGACTTGAAGATCGAG GCGCAGTGGGTGGTGAATGGGAAGCACTACAGCAAGACGAACGCCGCCTG GCTCGCAAACCTGGATAAGAATAAGACGGAGGCGAAGGCTCTGCTGGCCA GTATCCACGGTTCAGAGAAAGCGACCAAGGCCTTCGTGGACTGGCGGCTC TTCTTTCTGACTCTGGTGGAGTGTTTTGCCATGGACGACGGCAATCAGTG GTCGGTCAATTTATACCGGTTTGTAAAACCTCCTGCGGGGGGTAATGGTC GCACAGGTGGGAGTGCTTGAATGGCGCAACGTGTGGTGGATGCGTTCAAC CGCTTTGTCGATCAGAAAGTGGTTCCTCGAGTCCAGCCAATCGTCGAAAA GGACATGATGCCGGACCACCTAATCCGCCTTGGCATTCGCTCCATGCTCC GTGACATGCTCGCGGAGTTCAGCAGCCGCGGCCTCGAGGGGACAATGGTC GCCAAACAAGCGTACATCGACGAACTTAAATCCCTGCCCATCGCTATTGA CACCAACGCAGCCAACATCCAACATTACGAAGTGCCCACTTCCTTCTACA AACTAGTTCTGGGGCCGTACATGAAGTACTCCTGCGGTCTTTGGCCATCT TCCAACACGTCTTTCCAGGATTCCGAGACAGAAATGCTGGAGCTCTACTG TCAACGAGCTGAGCTGGAGGATGGGATGAAAATTCTAGATCTGGGATGTG GATGGGGCTCGGTGTCGCTCTTCGTGGCAAAGAAATACCCTCGTAGTCAG ATTTTTTCTCTGAGCAATTCCGCCACCCAGAGGGAGTATATAGAGAACGA GGCTCAAAAGAGGGGGTTGACAAACATAACTGTGTGGACGGCGGATATCA ACGGCAGTGCGACGGACGCGGATTTGTTTGACAGGGTGATATCGATCGAG ATGTTCGAACACATGAAGAACTACCAGAAATTGCTCGCTAAGGTTTCGTC ATGGCTGCGGCCGGGCGGAAAGCTATTCGTGCACATTTTCACGCATGCCA CCACGGCCTACCATTTCGACAAGAGCTGGATGGCGGAAAACTTTTTTACG GGCGGCCAGATGCCTTCGCAGGACCTCCTCCTTTACTTCCAGCAAGACTT GAAGATCGAGGCGCAGTGGGTGGTGAATGGGAAGCACTACAGCAAGACGA ACGCCGCCTGGCTCGCAAACCTGGATAAGAATAAGACGGAGGCGAAGGCT CTGCTGGCCAGTATCCACGGTTCAGAGAAAGCGACCAAGGCCTTCGTGGA CTGGCGGCTCTTCTTTCTGACTCTGGTGGAGTGTTTTGCCATGGACGACG GCAATCAGTGGTCGGTCAATTTATACCGGTTTGTAAAACCTCCTGCGGGG GGTAATGGTCGCACAGGTGGGAGTGCTTGAATGGCGCAACGTGTGGTGGA TGCGTTCAACCGCTTTGTCGATCAGAAAGTGGTTCCTCGAGTCCAGCCAA TCGTCGAAAAGGACATGATGCCGGACCACCTAATCCGCCTTGGCATTCGC TCCATGCTCCGTGACATGCTCGCGGAGTTCAGCAGCCGCGGCCTCGAGGG GACAATGGTCGCCAAACAAGCGTACATCGACGAACTTAAATCCCTGCCCA TCGCTATTGACACCAACGCAGCCAACATCCAACATTACGAAGTGCCCACT TCCTTCTACAAACTAGTTCTGGGGCCGTACATGAAGTACTCCTGCGGTCT TTGGCCATCTTCCAACACGTCTTTCCAGGATTCCGAGACAGAAATGCTGG AGCTCTACTGTCAACGAGCTGAGCTGGAGGATGGGATGAAAATTCTAGAT CTGGGATGTGGATGGGGCTCGGTGTCGCTCTTCGTGGCAAAGAAATACCC TCGTAGTCAGATTTTTTCTCTGAGCAATTCCGCCACCCAGAGGGAGTATA TAGAGAACGAGGCTCAAAAGAGGGGGTTGACAAACATAACTGTGTGGACG GCGGATATCAACGGCAGTGCGACGGACGCGGATTTGTTTGACAGGGTGAT ATCGATCGAGATGTTCGAACACATGAAGAACTACCAGAAATTGCTCGCTA AGGTTTCGTCATGGCTGCGGCCGGGCGGAAAGCTATTCGTGCACATTTTC ACGCATGCCACCACGGCCTACCATTTCGACAAGAGCTGGATGGCGGAAAA CTTTTTTACGGGCGGCCAGATGCCTTCGCAGGACCTCCTCCTTTACTTCC AGCAAGACTTGAAGATCGAGGCGCAGTGGGTGGTGAATGGGAAGCACTAC AGCAAGACGAACGCCGCCTGGCTCGCAAACCTGGATAAGAATAAGACGGA GGCGAAGGCTCTGCTGGCCAGTATCCACGGTTCAGAGAAAGCGACCAAGG CCTTCGTGGACTGGCGGCTCTTCTTTCTGACTCTGGTGGAGTGTTTTGCC ATGGACGACGGCAATCAGTGGTCGGTCAATTTATACCGGTTTGTAAAACC TCCTGCGGGGGGTAATGGTCGCACAGGTGGGAGTGCTTGAATGGCGCAAC GTGTGGTGGATGCGTTCAACCGCTTTGTCGATCAGAAAGTGGTTCCTCGA GTCCAGCCAATCGTCGAAAAGGACATGATGCCGGACCACCTAATCCGCCT TGGCATTCGCTCCATGCTCCGTGACATGCTCGCGGAGTTCAGCAGCCGCG GCCTCGAGGGGACAATGGTCGCCAAACAAGCGTACATCGACGAACTTAAA TCCCTGCCCATCGCTATTGACACCAACGCAGCCAACATCCAACATTACGA AGTGCCCACTTCCTTCTACAAACTAGTTCTGGGGCCGTACATGAAGTACT CCTGCGGTCTTTGGCCATCTTCCAACACGTCTTTCCAGGATTCCGAGACA GAAATGCTGGAGCTCTACTGTCAACGAGCTGAGCTGGAGGATGGGATGAA AATTCTAGATCTGGGATGTGGATGGGGCTCGGTGTCGCTCTTCGTGGCAA AGAAATACCCTCGTAGTCAGATTTTTTCTCTGAGCAATTCCGCCACCCAG AGGGAGTATATAGAGAACGAGGCTCAAAAGAGGGGGTTGACAAACATAAC TGTGTGGACGGCGGATATCAACGGCAGTGCGACGGACGCGGATTTGTTTG ACAGGGTGATATCGATCGAGATGTTCGAACACATGAAGAACTACCAGAAA TTGCTCGCTAAGGTTTCGTCATGGCTGCGGCCGGGCGGAAAGCTATTCGT GCACATTTTCACGCATGCCACCACGGCCTACCATTTCGACAAGAGCTGGA TGGCGGAAAACTTTTTTACGGGCGGCCAGATGCCTTCGCAGGACCTCCTC CTTTACTTCCAGCAAGACTTGAAGATCGAGGCGCAGTGGGTGGTGAATGG GAAGCACTACAGCAAGACGAACGCCGCCTGGCTCGCAAACCTGGATAAGA ATAAGACGGAGGCGAAGGCTCTGCTGGCCAGTATCCACGGTTCAGAGAAA GCGACCAAGGCCTTCGTGGACTGGCGGCTCTTCTTTCTGACTCTGGTGGA GTGTTTTGCCATGGACGACGGCAATCAGTGGTCGGTCAATTTATACCGGT TTGTAAAACCTCCTGCGGGGGGTAATGGTCGCACAGGTGGGAGTGCTTGA back to top
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