jgi.p|Nanoce1779_2|556592, mRNA_5492 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|556592
Unique NamemRNA_5492
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1249
Alignment locationscaffold_13:545301..547495 +

Link to JBrowse

Properties
Property NameValue
TranscriptId556678
TrackFilteredModels2
ProteinId556592
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:545301..547495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556592gene_5492Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556592mRNA_5492-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5492CDS_5492Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5492 ID=mRNA_5492|Name=jgi.p|Nanoce1779_2|556592|organism=Nannochloropsis oceanica|type=mRNA|length=1249bp
GTGTCTTCTCTATTTTCTTGCATGTGACCTTTTCATCCTTAGCCTCCTCT
CGTCCCCCTGATCAGACAGCAACAGCCGGAAATTGCGCCACAAGAAATAA
CCACAAACTCTTAACCCGCGAGGCAACGACCGCAACAAGATGGCGCAACG
TGTGGTGGATGCGTTCAACCGCTTTGTCGATCAGAAAGTGGTTCCTCGAG
TCCAGCCAATCGTCGAAAAGGACATGATGCCGGACCACCTAATCCGCCTT
GGCATTCGCTCCATGCTCCGTGACATGCTCGCGGAGTTCAGCAGCCGCGG
CCTCGAGGGGACAATGGTCGCCAAACAAGCGTACATCGACGAACTTAAAT
CCCTGCCCATCGCTATTGACACCAACGCAGCCAACATCCAACATTACGAA
GTGCCCACTTCCTTCTACAAACTAGTTCTGGGGCCGTACATGAAGTACTC
CTGCGGTCTTTGGCCATCTTCCAACACGTCTTTCCAGGATTCCGAGACAG
AAATGCTGGAGCTCTACTGTCAACGAGCTGAGCTGGAGGATGGGATGAAA
ATTCTAGATCTGGGATGTGGATGGGGCTCGGTGTCGCTCTTCGTGGCAAA
GAAATACCCTCGTAGTCAGATTTTTTCTCTGAGCAATTCCGCCACCCAGA
GGGAGTATATAGAGAACGAGGCTCAAAAGAGGGGGTTGACAAACATAACT
GTGTGGACGGCGGATATCAACGGCAGTGCGACGGACGCGGATTTGTTTGA
CAGGGTGATATCGATCGAGATGTTCGAACACATGAAGAACTACCAGAAAT
TGCTCGCTAAGGTTTCGTCATGGCTGCGGCCGGGCGGAAAGCTATTCGTG
CACATTTTCACGCATGCCACCACGGCCTACCATTTCGACAAGAGCTGGAT
GGCGGAAAACTTTTTTACGGGCGGCCAGATGCCTTCGCAGGACCTCCTCC
TTTACTTCCAGCAAGACTTGAAGATCGAGGCGCAGTGGGTGGTGAATGGG
AAGCACTACAGCAAGACGAACGCCGCCTGGCTCGCAAACCTGGATAAGAA
TAAGACGGAGGCGAAGGCTCTGCTGGCCAGTATCCACGGTTCAGAGAAAG
CGACCAAGGCCTTCGTGGACTGGCGGCTCTTCTTTCTGACTCTGGTGGAG
TGTTTTGCCATGGACGACGGCAATCAGTGGTCGGTCAATTTATACCGGTT
TGTAAAACCTCCTGCGGGGGGTAATGGTCGCACAGGTGGGAGTGCTTGA
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protein sequence of jgi.p|Nanoce1779_2|556592

>mRNA_5492-protein ID=mRNA_5492-protein|Name=jgi.p|Nanoce1779_2|556592|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MAQRVVDAFNRFVDQKVVPRVQPIVEKDMMPDHLIRLGIRSMLRDMLAEF
SSRGLEGTMVAKQAYIDELKSLPIAIDTNAANIQHYEVPTSFYKLVLGPY
MKYSCGLWPSSNTSFQDSETEMLELYCQRAELEDGMKILDLGCGWGSVSL
FVAKKYPRSQIFSLSNSATQREYIENEAQKRGLTNITVWTADINGSATDA
DLFDRVISIEMFEHMKNYQKLLAKVSSWLRPGGKLFVHIFTHATTAYHFD
KSWMAENFFTGGQMPSQDLLLYFQQDLKIEAQWVVNGKHYSKTNAAWLAN
LDKNKTEAKALLASIHGSEKATKAFVDWRLFFLTLVECFAMDDGNQWSVN
LYRFVKPPAGGNGRTGGSA*
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mRNA from alignment at scaffold_13:545301..547495+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5492 ID=mRNA_5492|Name=jgi.p|Nanoce1779_2|556592|organism=Nannochloropsis oceanica|type=mRNA|length=2195bp|location=Sequence derived from alignment at scaffold_13:545301..547495+ (Nannochloropsis oceanica)
GTGTCTTCTCTATTTTCTTGCATGTGACCTTTTCATCCTTAGCCTCCTCT CGTCCCCCTGATCAGACAGCAACAGCCGGAAATTGCGCCACAAGAAATAA CCACAAACTCTTAACCCGCGAGGCAACGACCGCAACAAGATGGCGCAACG TGTGGTGGATGCGTTCAACCGCTTTGTCGATCAGAAAGTGGTTCCTCGAG TCCAGCCAATCGTCGAAAAGGACATGATGCCGGACCACCTAATCCGCCTT GGTAAGTACTGCGTGCATCCCAACCCCATGCCCAGGCAGTGACCAGCTCC TCCGTTCCATTCGACGATTTGCCCATCATTCATGTATACCGTGAAAATCA AATTCTTGCTTTGGGAAGGGCGTAGAGATGATGTCTGGCCCTCCGTCTTT TTTAATGGCGAGACGCTCACTCAAATGTCTAGGCGACCAATTATTTGGCA AATTCAGCCCATCCCCGTCATCAGTCTACACGCGACAAATGCCAAGTACC TCTCGACCCTCACTACCGTCACGTATTCCCTCTCTCCATGCTACACGCCC TCAAACCCAGGCATTCGCTCCATGCTCCGTGACATGCTCGCGGAGTTCAG CAGCCGCGGCCTCGAGGGGACAATGGTCGCCAAACAAGCGTACATCGACG AACTTAAATCCCTGCCCATCGCTATTGACACCAACGCAGCCAACATCCAA CATTACGAAGTGCCCACTTCCTTCTACAAACTAGTTCTGGGGCCGTACAT GAAGTACTCCTGCGGTCTTTGGCCATCTTCCAACACGTCTTTCCAGGATT CCGAGACAGAAATGCTGGAGCTCTACTGTCAACGAGCTGAGCTGGAGGAT GGGATGAAAATTCTAGATCTGGGATGTGGATGGGGCTCGGTGTCGCTCTT CGTGGCAAAGAAATACCCTCGTAGTCAGATTTTTTCTCTGAGCAATTCCG CCACCCAGAGGGAGTATATAGAGAACGAGGCTCAAAAGAGGGGGTTGACA AACATAACTGTGTGGACGGCGGATATCAACGGGTTTGAAATTCCGAGGAC AACGGGCGCGGGAGGAGGGGGGGGAGGGGCGGGTGGGTTGTTGAAGGCCT TGATGAAGAAGGCGAGTTTGTCGAGGGTGGCAGCGGAGGAGCCGGGGGAG GAAGTGTTGGGTGCCTCATCGCCTACCACTCCCTATACCCCAGTAACGAC AGCATCAGCAGATACAACAAAAGGAGCTGCAGCATCAAGCAGTGCGACGG ACGCGGATTTGTTTGACAGGGTGATATCGATCGAGATGTTCGAACACATG AAGAACTACCAGAAATTGCTCGCTAAGGTTTCGTCATGGCTGCGGCCGGG CGGAAAGCTATTCGTGCACATTTTCACGCATGCCACCACGGCCTACCATT TCGACAAGAGCTGGATGGCGGAAAACTTTTTTACGGGCGGTAGGTGCCGA GGAAGGGAGGGAGTGAGCGAGGAGGGTGGAGAAGGTGAGCAGGAAGATGT CTTTTGACTTTTGATCGAGCCATTGATATCCTCACCTTCTCCTTTTCTTT CTTGTATGTGTTCGTTTGTTTCATGTCGGACAGGCCAGATGCCTTCGCAG GACCTCCTCCTTTACTTCCAGCAAGACTTGAAGATCGAGGCGCAGTGGGT GGTGAATGGGAAGCACTACAGCAAGACGAACGCCGCCTGGCTCGCAAACC TGGATAAGAATAAGACGGAGGTACGGGATGCTTTCAGAGGGATGTGGGTA GAGACACAGGTGCTGGGTATTTGAGAAGGAGGAAAAGGAGGAGGGTTGGA TGGGAGAAAAGCGAGGAAGGAGGAGGAAGAAGGATGAGGATGGAGGAGGA ACAAGACCTCTTTTCCCGATTATTGCTATCGTGAAACACACAACATTCGT CTGATAAAAATGCATTTTAAAATGTCTTTTCGTCTTGTCGCGGGAGTACC CTATTCACCAACCCTCTCGCCTTGATCCTCCCATTCACACATACACCCCC TGTCAGGCGAAGGCTCTGCTGGCCAGTATCCACGGTTCAGAGAAAGCGAC CAAGGCCTTCGTGGACTGGCGGCTCTTCTTTCTGACTCTGGTGGAGTGTT TTGCCATGGACGACGGCAATCAGTGGTCGGTCAATTTATACCGGTTTGTA AAACCTCCTGCGGGGGGTAATGGTCGCACAGGTGGGAGTGCTTGA
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Coding sequence (CDS) from alignment at scaffold_13:545301..547495+

>mRNA_5492 ID=mRNA_5492|Name=jgi.p|Nanoce1779_2|556592|organism=Nannochloropsis oceanica|type=CDS|length=5550bp|location=Sequence derived from alignment at scaffold_13:545301..547495+ (Nannochloropsis oceanica)
ATGGCGCAACGTGTGGTGGATGCGTTCAACCGCTTTGTCGATCAGAAAGT
GGTTCCTCGAGTCCAGCCAATCGTCGAAAAGGACATGATGCCGGACCACC
TAATCCGCCTTGGCATTCGCTCCATGCTCCGTGACATGCTCGCGGAGTTC
AGCAGCCGCGGCCTCGAGGGGACAATGGTCGCCAAACAAGCGTACATCGA
CGAACTTAAATCCCTGCCCATCGCTATTGACACCAACGCAGCCAACATCC
AACATTACGAAGTGCCCACTTCCTTCTACAAACTAGTTCTGGGGCCGTAC
ATGAAGTACTCCTGCGGTCTTTGGCCATCTTCCAACACGTCTTTCCAGGA
TTCCGAGACAGAAATGCTGGAGCTCTACTGTCAACGAGCTGAGCTGGAGG
ATGGGATGAAAATTCTAGATCTGGGATGTGGATGGGGCTCGGTGTCGCTC
TTCGTGGCAAAGAAATACCCTCGTAGTCAGATTTTTTCTCTGAGCAATTC
CGCCACCCAGAGGGAGTATATAGAGAACGAGGCTCAAAAGAGGGGGTTGA
CAAACATAACTGTGTGGACGGCGGATATCAACGGCAGTGCGACGGACGCG
GATTTGTTTGACAGGGTGATATCGATCGAGATGTTCGAACACATGAAGAA
CTACCAGAAATTGCTCGCTAAGGTTTCGTCATGGCTGCGGCCGGGCGGAA
AGCTATTCGTGCACATTTTCACGCATGCCACCACGGCCTACCATTTCGAC
AAGAGCTGGATGGCGGAAAACTTTTTTACGGGCGGCCAGATGCCTTCGCA
GGACCTCCTCCTTTACTTCCAGCAAGACTTGAAGATCGAGGCGCAGTGGG
TGGTGAATGGGAAGCACTACAGCAAGACGAACGCCGCCTGGCTCGCAAAC
CTGGATAAGAATAAGACGGAGGCGAAGGCTCTGCTGGCCAGTATCCACGG
TTCAGAGAAAGCGACCAAGGCCTTCGTGGACTGGCGGCTCTTCTTTCTGA
CTCTGGTGGAGTGTTTTGCCATGGACGACGGCAATCAGTGGTCGGTCAAT
TTATACCGGTTTGTAAAACCTCCTGCGGGGGGTAATGGTCGCACAGGTGG
GAGTGCTTGAATGGCGCAACGTGTGGTGGATGCGTTCAACCGCTTTGTCG
ATCAGAAAGTGGTTCCTCGAGTCCAGCCAATCGTCGAAAAGGACATGATG
CCGGACCACCTAATCCGCCTTGGCATTCGCTCCATGCTCCGTGACATGCT
CGCGGAGTTCAGCAGCCGCGGCCTCGAGGGGACAATGGTCGCCAAACAAG
CGTACATCGACGAACTTAAATCCCTGCCCATCGCTATTGACACCAACGCA
GCCAACATCCAACATTACGAAGTGCCCACTTCCTTCTACAAACTAGTTCT
GGGGCCGTACATGAAGTACTCCTGCGGTCTTTGGCCATCTTCCAACACGT
CTTTCCAGGATTCCGAGACAGAAATGCTGGAGCTCTACTGTCAACGAGCT
GAGCTGGAGGATGGGATGAAAATTCTAGATCTGGGATGTGGATGGGGCTC
GGTGTCGCTCTTCGTGGCAAAGAAATACCCTCGTAGTCAGATTTTTTCTC
TGAGCAATTCCGCCACCCAGAGGGAGTATATAGAGAACGAGGCTCAAAAG
AGGGGGTTGACAAACATAACTGTGTGGACGGCGGATATCAACGGCAGTGC
GACGGACGCGGATTTGTTTGACAGGGTGATATCGATCGAGATGTTCGAAC
ACATGAAGAACTACCAGAAATTGCTCGCTAAGGTTTCGTCATGGCTGCGG
CCGGGCGGAAAGCTATTCGTGCACATTTTCACGCATGCCACCACGGCCTA
CCATTTCGACAAGAGCTGGATGGCGGAAAACTTTTTTACGGGCGGCCAGA
TGCCTTCGCAGGACCTCCTCCTTTACTTCCAGCAAGACTTGAAGATCGAG
GCGCAGTGGGTGGTGAATGGGAAGCACTACAGCAAGACGAACGCCGCCTG
GCTCGCAAACCTGGATAAGAATAAGACGGAGGCGAAGGCTCTGCTGGCCA
GTATCCACGGTTCAGAGAAAGCGACCAAGGCCTTCGTGGACTGGCGGCTC
TTCTTTCTGACTCTGGTGGAGTGTTTTGCCATGGACGACGGCAATCAGTG
GTCGGTCAATTTATACCGGTTTGTAAAACCTCCTGCGGGGGGTAATGGTC
GCACAGGTGGGAGTGCTTGAATGGCGCAACGTGTGGTGGATGCGTTCAAC
CGCTTTGTCGATCAGAAAGTGGTTCCTCGAGTCCAGCCAATCGTCGAAAA
GGACATGATGCCGGACCACCTAATCCGCCTTGGCATTCGCTCCATGCTCC
GTGACATGCTCGCGGAGTTCAGCAGCCGCGGCCTCGAGGGGACAATGGTC
GCCAAACAAGCGTACATCGACGAACTTAAATCCCTGCCCATCGCTATTGA
CACCAACGCAGCCAACATCCAACATTACGAAGTGCCCACTTCCTTCTACA
AACTAGTTCTGGGGCCGTACATGAAGTACTCCTGCGGTCTTTGGCCATCT
TCCAACACGTCTTTCCAGGATTCCGAGACAGAAATGCTGGAGCTCTACTG
TCAACGAGCTGAGCTGGAGGATGGGATGAAAATTCTAGATCTGGGATGTG
GATGGGGCTCGGTGTCGCTCTTCGTGGCAAAGAAATACCCTCGTAGTCAG
ATTTTTTCTCTGAGCAATTCCGCCACCCAGAGGGAGTATATAGAGAACGA
GGCTCAAAAGAGGGGGTTGACAAACATAACTGTGTGGACGGCGGATATCA
ACGGCAGTGCGACGGACGCGGATTTGTTTGACAGGGTGATATCGATCGAG
ATGTTCGAACACATGAAGAACTACCAGAAATTGCTCGCTAAGGTTTCGTC
ATGGCTGCGGCCGGGCGGAAAGCTATTCGTGCACATTTTCACGCATGCCA
CCACGGCCTACCATTTCGACAAGAGCTGGATGGCGGAAAACTTTTTTACG
GGCGGCCAGATGCCTTCGCAGGACCTCCTCCTTTACTTCCAGCAAGACTT
GAAGATCGAGGCGCAGTGGGTGGTGAATGGGAAGCACTACAGCAAGACGA
ACGCCGCCTGGCTCGCAAACCTGGATAAGAATAAGACGGAGGCGAAGGCT
CTGCTGGCCAGTATCCACGGTTCAGAGAAAGCGACCAAGGCCTTCGTGGA
CTGGCGGCTCTTCTTTCTGACTCTGGTGGAGTGTTTTGCCATGGACGACG
GCAATCAGTGGTCGGTCAATTTATACCGGTTTGTAAAACCTCCTGCGGGG
GGTAATGGTCGCACAGGTGGGAGTGCTTGAATGGCGCAACGTGTGGTGGA
TGCGTTCAACCGCTTTGTCGATCAGAAAGTGGTTCCTCGAGTCCAGCCAA
TCGTCGAAAAGGACATGATGCCGGACCACCTAATCCGCCTTGGCATTCGC
TCCATGCTCCGTGACATGCTCGCGGAGTTCAGCAGCCGCGGCCTCGAGGG
GACAATGGTCGCCAAACAAGCGTACATCGACGAACTTAAATCCCTGCCCA
TCGCTATTGACACCAACGCAGCCAACATCCAACATTACGAAGTGCCCACT
TCCTTCTACAAACTAGTTCTGGGGCCGTACATGAAGTACTCCTGCGGTCT
TTGGCCATCTTCCAACACGTCTTTCCAGGATTCCGAGACAGAAATGCTGG
AGCTCTACTGTCAACGAGCTGAGCTGGAGGATGGGATGAAAATTCTAGAT
CTGGGATGTGGATGGGGCTCGGTGTCGCTCTTCGTGGCAAAGAAATACCC
TCGTAGTCAGATTTTTTCTCTGAGCAATTCCGCCACCCAGAGGGAGTATA
TAGAGAACGAGGCTCAAAAGAGGGGGTTGACAAACATAACTGTGTGGACG
GCGGATATCAACGGCAGTGCGACGGACGCGGATTTGTTTGACAGGGTGAT
ATCGATCGAGATGTTCGAACACATGAAGAACTACCAGAAATTGCTCGCTA
AGGTTTCGTCATGGCTGCGGCCGGGCGGAAAGCTATTCGTGCACATTTTC
ACGCATGCCACCACGGCCTACCATTTCGACAAGAGCTGGATGGCGGAAAA
CTTTTTTACGGGCGGCCAGATGCCTTCGCAGGACCTCCTCCTTTACTTCC
AGCAAGACTTGAAGATCGAGGCGCAGTGGGTGGTGAATGGGAAGCACTAC
AGCAAGACGAACGCCGCCTGGCTCGCAAACCTGGATAAGAATAAGACGGA
GGCGAAGGCTCTGCTGGCCAGTATCCACGGTTCAGAGAAAGCGACCAAGG
CCTTCGTGGACTGGCGGCTCTTCTTTCTGACTCTGGTGGAGTGTTTTGCC
ATGGACGACGGCAATCAGTGGTCGGTCAATTTATACCGGTTTGTAAAACC
TCCTGCGGGGGGTAATGGTCGCACAGGTGGGAGTGCTTGAATGGCGCAAC
GTGTGGTGGATGCGTTCAACCGCTTTGTCGATCAGAAAGTGGTTCCTCGA
GTCCAGCCAATCGTCGAAAAGGACATGATGCCGGACCACCTAATCCGCCT
TGGCATTCGCTCCATGCTCCGTGACATGCTCGCGGAGTTCAGCAGCCGCG
GCCTCGAGGGGACAATGGTCGCCAAACAAGCGTACATCGACGAACTTAAA
TCCCTGCCCATCGCTATTGACACCAACGCAGCCAACATCCAACATTACGA
AGTGCCCACTTCCTTCTACAAACTAGTTCTGGGGCCGTACATGAAGTACT
CCTGCGGTCTTTGGCCATCTTCCAACACGTCTTTCCAGGATTCCGAGACA
GAAATGCTGGAGCTCTACTGTCAACGAGCTGAGCTGGAGGATGGGATGAA
AATTCTAGATCTGGGATGTGGATGGGGCTCGGTGTCGCTCTTCGTGGCAA
AGAAATACCCTCGTAGTCAGATTTTTTCTCTGAGCAATTCCGCCACCCAG
AGGGAGTATATAGAGAACGAGGCTCAAAAGAGGGGGTTGACAAACATAAC
TGTGTGGACGGCGGATATCAACGGCAGTGCGACGGACGCGGATTTGTTTG
ACAGGGTGATATCGATCGAGATGTTCGAACACATGAAGAACTACCAGAAA
TTGCTCGCTAAGGTTTCGTCATGGCTGCGGCCGGGCGGAAAGCTATTCGT
GCACATTTTCACGCATGCCACCACGGCCTACCATTTCGACAAGAGCTGGA
TGGCGGAAAACTTTTTTACGGGCGGCCAGATGCCTTCGCAGGACCTCCTC
CTTTACTTCCAGCAAGACTTGAAGATCGAGGCGCAGTGGGTGGTGAATGG
GAAGCACTACAGCAAGACGAACGCCGCCTGGCTCGCAAACCTGGATAAGA
ATAAGACGGAGGCGAAGGCTCTGCTGGCCAGTATCCACGGTTCAGAGAAA
GCGACCAAGGCCTTCGTGGACTGGCGGCTCTTCTTTCTGACTCTGGTGGA
GTGTTTTGCCATGGACGACGGCAATCAGTGGTCGGTCAATTTATACCGGT
TTGTAAAACCTCCTGCGGGGGGTAATGGTCGCACAGGTGGGAGTGCTTGA
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Synonyms
Publications