jgi.p|Nanoce1779_2|631099, mRNA_5491 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|631099
Unique NamemRNA_5491
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1085
Alignment locationscaffold_13:542343..544600 -

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Properties
Property NameValue
TranscriptId631185
TrackFilteredModels2
ProteinId631099
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:542343..544600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631099gene_5491Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631099mRNA_5491-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5491CDS_5491Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5491 ID=mRNA_5491|Name=jgi.p|Nanoce1779_2|631099|organism=Nannochloropsis oceanica|type=mRNA|length=1085bp
ATGGGTGGTGGCACGGGGGAAGGCGGAGTTAACCTCAATAGCTGGACGAA
TCGACTGTTGGCATTGAATGTGGCTATCTTTTTTTTGCAACAGGTGAATC
CGAGTATCACCTTGATGGGGGCGAAGAACGATAAGCTTATTCGACGGGGG
GAGTTGCACCGCCTGTTTACCCCGATGCTGTTGCATGGAGACTTGCAGCA
TTTAATGGCCAATTCTTATACCATGTACAATCTGGGGCATTTCATCGAGC
CACTATTTGGGGGGTCAAAGGCTTACTTATCCTTGTATGTCCTTTCGGGC
GTGGCCGGTAATTACTTGTCGTTTGCTTCTGGCAGGGCGCCGATCTCGAT
AGGAGCGTCTACAGCGGTCTCGGGGCTGCTGGGGGCCGTGGGGTTGTTTT
GTTATCGCCACCGGATGGTGTGGAATTTGGAGGGTCCGTTGAGGTCCGTT
GCGCAAGCAGTGGTGATCAACGGGGTGCTCGGGATGAGTAGTCCGAGGAT
TGACAATTTTGGGCATTTAGGGGGGCTGGTGGGAGGGATGGTGTGTGGGT
GGTTGTTCGGACCGAGGCTGGTGCCGTTGCACACAAAGGAGGGCCAATTT
AGAGGGTACGTGAATAGCCCAATCCTGCAGACGAGCTTGGCGGAGGCCGG
GAGGAAGAAAAACAAGTTTTTCTTCCTCGCCTGCTGAGAAGGGGGACAGG
CGATCATCCGTCTCCCTCTCGTTCCGTCGCCCACATTCTTCTCATTCTCT
CGCTTTACGCCTCTCTCTCTCTCTCTCTCTCTCTCGCTCCTTCTCTCTTG
CTTTCCCACTGTTGCGAGCGGAAACTACAGCTCGGCCACACTACCAACAC
ACGCCCCTCCTTCCCTCCCTCCACATCACTCTTTCATTCCATCCCTTCCT
TCCCCTCCTCAAGACCTTCACATGTCACGCATGTAGGACCCAAAAAAAGC
CAGCTCGGAAAAAAAATACCTTTCCATCCGCCTGCCGACCGTCTCCCTCC
CTCCTTCCCTCCCTCCCATCGCCCTCCTCCCTTCTTTCACTACCGACCAC
CTCGTCCTTAGTACTTATACCCCTTCACGAACAGG
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protein sequence of jgi.p|Nanoce1779_2|631099

>mRNA_5491-protein ID=mRNA_5491-protein|Name=jgi.p|Nanoce1779_2|631099|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MGGGTGEGGVNLNSWTNRLLALNVAIFFLQQVNPSITLMGAKNDKLIRRG
ELHRLFTPMLLHGDLQHLMANSYTMYNLGHFIEPLFGGSKAYLSLYVLSG
VAGNYLSFASGRAPISIGASTAVSGLLGAVGLFCYRHRMVWNLEGPLRSV
AQAVVINGVLGMSSPRIDNFGHLGGLVGGMVCGWLFGPRLVPLHTKEGQF
RGYVNSPILQTSLAEAGRKKNKFFFLAC*
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mRNA from alignment at scaffold_13:542343..544600-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5491 ID=mRNA_5491|Name=jgi.p|Nanoce1779_2|631099|organism=Nannochloropsis oceanica|type=mRNA|length=2258bp|location=Sequence derived from alignment at scaffold_13:542343..544600- (Nannochloropsis oceanica)
ATGGGTGGTGGCACGGGGGAAGGCGGAGTTAACCTCAATAGCTGGACGAA
TCGACTGTTGGCATTGAATGTGGCTATCTTTTTTTTGCAACAGGTGAATC
CGAGTATCACCTTGATGGGGGCGAAGAACGATAAGCTTATTCGACGGGGG
GAGTTGCACCGCCTGTTTACCCCGATGCTGTTGCATGGAGACTTGCAGCA
TTTAATGGCCAATTCTTATACCATGTACAATCTGGGGCATTTCATCGAGC
CACTATTTGGGGGGTCAAAGGCTTACTTATCCTTGTATGTCCTTTCGGGC
GTGGCCGGTAATTACTTGTCGTTTGCTTCTGGCAGGGCGCCGATCTCGAT
AGGAGCGTCTACAGCGGTCTCGGGGCTGCTGGGGGCCGTGGGGTTGTTTT
GTTATCGCCACCGGATGGTGTGGAATTTGGAGGGTCCGTTGAGGTCCGTT
GCGCAAGCAGTGGTGATCAACGGGGTGCTCGGGATGAGTAGTCCGAGGAT
TGACAATTTTGGGCATTTAGGGGGGCTGGTGGGAGGGATGGTGTGTGGGT
GGTTGTTCGGACCGAGGCTGGTGCCGTTGCACACAAAGGAGGGCCAATTT
AGAGGGTACGTGAATAGCCCAATCCTGCAGACGAGCTTGGCGGAGGCCGG
GAGGAAGGTGAGGGGGAGTTTAGGGAGGACGAAGGGAGGTAGGCAGGGAG
GGCAGCTTGGGCAACAACCGAAGCAGAGATGGGGAGGAGTGACTCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCATGCGAGACATGGATGGAGTAAGAAGGTGCCAACATGGTGGCAGC
GGCTGGGTACGTTTCTGCATCGAGGTGGGGATGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGGGGGAGGGTGGCTGGCTTATGTCGGGGCACC
TGGCGGTGGGGGGTGGGAGAGAAGGGGTCGTAGCGGGAGAGTGTTGCGAG
ATGGAAGAGGAAGGGGATGGAGTAGTCAGGGAGGAAGAGGATGCGCTCAA
GGACCTTACACGACTGGATTGTCGCTGGAGGTGATGATGGGAGGCAGGGG
GGGAGGAGTGAGGGGTGGGTAAGAGGCGGAAAAACACAACGAGATATATA
GAGAGAAGACTGAGTGAAAAAAAAGTGAACAGCAACACAGAAAGAAATGA
CAACTGTACTTAAGAAATAACCTATGAATTTGCCCACCAGTGAGTTCACG
GGAGGAGCACCCCGCGTCATTAACAATCGCAGATGTAAGAAGCCCAACAA
AAGAAAACCATACGAGAAGAGATCTCGATTTCAGGTTGGAAAATGTATAG
TTGATTATTCATTGACCGCTTCCCCCAGCACATACGCACACACATCACGA
CACACCCACCAATTTTCCTACCTTTCTTTCCTTTCTTCCCTCCTTCCCTC
CTTCAACCGCACGCACATAGATAACACCGACACCGGACAAGACACACGAT
CCATCCCGCCCGCACTCCAGTACCTTCACACCCTCTCTCCTGTTTCCCTC
CCCCTCTTCCTTCCTTCCCGCCCTCCTCCGAAGAGGCGGACGAGGGCAAG
AAGGAAGAGGGGGGAGGACCAAAACGAGTGCGGGCGTCTCGTTGAAGCCA
CCATACCATGGTCACGGGGCGGGGAGGTTGGGTTTGGGATTTCCCTCACA
CACACACATAACATCAATAGGAGAATATGGGATGATTATATTGCTTCTGC
TGCTGTTGTTGCTGCTGCGGCTGCTTTCTTTTGATGTGATCCTGCTTCTG
TTTCACGTCGCTCTACTTCTTACTTGTCAGAAAAACAAGTTTTTCTTCCT
CGCCTGCTGAGAAGGGGGACAGGCGATCATCCGTCTCCCTCTCGTTCCGT
CGCCCACATTCTTCTCATTCTCTCGCTTTACGCCTCTCTCTCTCTCTCTC
TCTCTCTCGCTCCTTCTCTCTTGCTTTCCCACTGTTGCGAGCGGAAACTA
CAGCTCGGCCACACTACCAACACACGCCCCTCCTTCCCTCCCTCCACATC
ACTCTTTCATTCCATCCCTTCCTTCCCCTCCTCAAGACCTTCACATGTCA
CGCATGTAGGACCCAAAAAAAGCCAGCTCGGAAAAAAAATACCTTTCCAT
CCGCCTGCCGACCGTCTCCCTCCCTCCTTCCCTCCCTCCCATCGCCCTCC
TCCCTTCTTTCACTACCGACCACCTCGTCCTTAGTACTTATACCCCTTCA
CGAACAGG
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Coding sequence (CDS) from alignment at scaffold_13:542343..544600-

>mRNA_5491 ID=mRNA_5491|Name=jgi.p|Nanoce1779_2|631099|organism=Nannochloropsis oceanica|type=CDS|length=1374bp|location=Sequence derived from alignment at scaffold_13:542343..544600- (Nannochloropsis oceanica)
AAAAACAAGTTTTTCTTCCTCGCCTGCTGAATGGGTGGTGGCACGGGGGA
AGGCGGAGTTAACCTCAATAGCTGGACGAATCGACTGTTGGCATTGAATG
TGGCTATCTTTTTTTTGCAACAGGTGAATCCGAGTATCACCTTGATGGGG
GCGAAGAACGATAAGCTTATTCGACGGGGGGAGTTGCACCGCCTGTTTAC
CCCGATGCTGTTGCATGGAGACTTGCAGCATTTAATGGCCAATTCTTATA
CCATGTACAATCTGGGGCATTTCATCGAGCCACTATTTGGGGGGTCAAAG
GCTTACTTATCCTTGTATGTCCTTTCGGGCGTGGCCGGTAATTACTTGTC
GTTTGCTTCTGGCAGGGCGCCGATCTCGATAGGAGCGTCTACAGCGGTCT
CGGGGCTGCTGGGGGCCGTGGGGTTGTTTTGTTATCGCCACCGGATGGTG
TGGAATTTGGAGGGTCCGTTGAGGTCCGTTGCGCAAGCAGTGGTGATCAA
CGGGGTGCTCGGGATGAGTAGTCCGAGGATTGACAATTTTGGGCATTTAG
GGGGGCTGGTGGGAGGGATGGTGTGTGGGTGGTTGTTCGGACCGAGGCTG
GTGCCGTTGCACACAAAGGAGGGCCAATTTAGAGGGTACGTGAATAGCCC
AATCCTGCAGACGAGCTTGGCGGAGGCCGGGAGGAAGAAAAACAAGTTTT
TCTTCCTCGCCTGCTGAATGGGTGGTGGCACGGGGGAAGGCGGAGTTAAC
CTCAATAGCTGGACGAATCGACTGTTGGCATTGAATGTGGCTATCTTTTT
TTTGCAACAGGTGAATCCGAGTATCACCTTGATGGGGGCGAAGAACGATA
AGCTTATTCGACGGGGGGAGTTGCACCGCCTGTTTACCCCGATGCTGTTG
CATGGAGACTTGCAGCATTTAATGGCCAATTCTTATACCATGTACAATCT
GGGGCATTTCATCGAGCCACTATTTGGGGGGTCAAAGGCTTACTTATCCT
TGTATGTCCTTTCGGGCGTGGCCGGTAATTACTTGTCGTTTGCTTCTGGC
AGGGCGCCGATCTCGATAGGAGCGTCTACAGCGGTCTCGGGGCTGCTGGG
GGCCGTGGGGTTGTTTTGTTATCGCCACCGGATGGTGTGGAATTTGGAGG
GTCCGTTGAGGTCCGTTGCGCAAGCAGTGGTGATCAACGGGGTGCTCGGG
ATGAGTAGTCCGAGGATTGACAATTTTGGGCATTTAGGGGGGCTGGTGGG
AGGGATGGTGTGTGGGTGGTTGTTCGGACCGAGGCTGGTGCCGTTGCACA
CAAAGGAGGGCCAATTTAGAGGGTACGTGAATAGCCCAATCCTGCAGACG
AGCTTGGCGGAGGCCGGGAGGAAG
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Synonyms
Publications