Properties
| Property Name | Value |
|---|
| TranscriptId | 592790 |
| Track | FilteredModels2 |
| ProteinId | 592704 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:540588..542492 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5490 ID=mRNA_5490|Name=jgi.p|Nanoce1779_2|592704|organism=Nannochloropsis oceanica|type=mRNA|length=1295bp
ACAGTCACCTCTCCTTAATTTAAGATGGCTCGCCTCTTCGTCACCGTTGC
CTCCTTCGTGGCCGCCTGTGCCACCGTCAACGCCTTCCAGGTGCCCCGTA
TGTCTTTGGACAAGTACAGGAGCGAGCTGGCCGAGACCGCTAAGAAGATT
GCCGCCCCCGGCAAGGGTATTTTGGCCGTAGATGAGTCGACCAAGACCAT
CGGCAAGCGTTTGGAAGGGATCAGCGTGGAGAACACGGAGGCCAACCGTC
AGGCGTACCGTGGTCTCCTCTTCACCACCCCCAACATCGGCAACTACATC
TCCGGCGCCATCCTCTACGAGGAGACTCTCTTCCAGAACAACGTGGACGG
TACCCCCTTCGTCAAGAACCTGAACACTGCTGGCGTCATTCCGGGTATCA
AGGTCGACATGGGTCTGTCGCCCCTTCCCGGGGGACACCCCGTCGAGACC
TGGTGCACGGGCTTGGACGGACTCGTCGAGCGCGCTCAGAAGTACTACGC
TCAAGGCGCGCGTTTCGCGAAGTGGCGTGCCGTGCTCCAGATCACCTCCG
ACGGTGCCCCCTCTGAGCTCTCCATCCAAGAGAACGCGTGGGGCCTGGCC
CGTTACGCGCGTGCCGTGCAAGAGGGTGGCCTGGTTCCCATTGTCGAGCC
CGAGATCCTGATGGACGGCGACCACAATATCGAGACGACTGCGCGTGTGC
AGGAGCGTGTCTTGGCCGCGGTCTACAAGGCTCTGTCTGACAACGGCGTG
TATCTCGAGGGCTCCCTGCTCAAGCCCTCTATGACTCTCCCCGGAGCCGA
CTGCGGGGAAACCGTCACGTCCGAGAAGATCGCTGAGTATACGGTTCGCA
CCCTCGAGCGCCACGTCCCTTCGTCCGTACCTGGTGTGATGTTCCTCTCC
GGCGGCATGTCCGAGGAGGAGGCCTCCATCAACCTGAACGCCCTGAACAA
GCGCGCTCGTAAGGGCCCGTGGTCCTTGTCCTTTTCCTACGGCCGTGCTC
TGCAGCAGTCTTGCCTCAAGGCGTGGCAGGGGAAGCAGGAGAACGTCCCC
GCCGCCCGCGCGGCTTTGTTGGCCCGTGCCCAGGCTAACAGCGAGGCCAA
CCTGGGAAAGTACGTCGCGGGCTCCCAGCCGTCGGCGGACGAGACCCTGT
TCGTGAAGGGGTATAAGTACTAAGGACGAGGTGGTCGGTAGTGAAAGAAG
GGAGGAGGGCGATGGGAGGGAGGGAAGGAGGGAGGGAGACGGTCGGCAGG
CGGATGGAAAGGTATTTTTTTTCCGAGCTGGCTTTTTTTGGGTCC back to topprotein sequence of jgi.p|Nanoce1779_2|592704 >mRNA_5490-protein ID=mRNA_5490-protein|Name=jgi.p|Nanoce1779_2|592704|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MARLFVTVASFVAACATVNAFQVPRMSLDKYRSELAETAKKIAAPGKGIL
AVDESTKTIGKRLEGISVENTEANRQAYRGLLFTTPNIGNYISGAILYEE
TLFQNNVDGTPFVKNLNTAGVIPGIKVDMGLSPLPGGHPVETWCTGLDGL
VERAQKYYAQGARFAKWRAVLQITSDGAPSELSIQENAWGLARYARAVQE
GGLVPIVEPEILMDGDHNIETTARVQERVLAAVYKALSDNGVYLEGSLLK
PSMTLPGADCGETVTSEKIAEYTVRTLERHVPSSVPGVMFLSGGMSEEEA
SINLNALNKRARKGPWSLSFSYGRALQQSCLKAWQGKQENVPAARAALLA
RAQANSEANLGKYVAGSQPSADETLFVKGYKY* back to topmRNA from alignment at scaffold_13:540588..542492+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5490 ID=mRNA_5490|Name=jgi.p|Nanoce1779_2|592704|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp|location=Sequence derived from alignment at scaffold_13:540588..542492+ (Nannochloropsis oceanica)
ACAGTCACCTCTCCTTAATTTAAGATGGCTCGCCTCTTCGTCACCGTTGC
CTCCTTCGTGGCCGCCTGTGCCACCGTCAACGCCTTCCAGGTGCCCCGTA
TGTCTTTGGACAAGTACAGGAGCGAGCTGGCCGAGACCGCTAAGAAGATT
GCCGCCCCCGGTACGTTTAGAGGGGTTGGGATAAATGGAGACGGGGATTA
GCGTGGGAGACGTGGGGGACGGGAGGAAAGATCAGGGCTGCCGAAGAGCA
CCAGGTGTTGACATCGCAAGTTCTGTCGGAAAGGGCAGCCATGTGTGCTG
TATTTAAAATAGCGGCGTCTGCGGCGCTCAATGGTTGTTGTTGAGTGATT
GCGACCTGCCCGCGCGTATCTGTCCTGCGTGTGATCTGGTGGAGTATATG
GTTCAGTCCCACACGAACCCATTCATCCTTGTTTTCTTCACTCATCCCGT
TCTTACAGGCAAGGGTATTTTGGCCGTAGATGAGTCGACCAAGACCATCG
GCAAGCGTTTGGAAGGGATCAGCGTGGAGAACACGGAGGCCAACCGTCAG
GCGTACCGTGGTCTCCTCTTCACCACCCCCAACATCGGCAACTACATCTC
CGGCGCCATCCTCTACGAGGAGACTCTCTTCCAGGTACGTCTAACTCTGA
TACAATGCATTTTGAAATGTGTGAAAGTGTGACAGCGAATGATTCGATGG
ACCAGCGTTTTTGACCCGGTCCCCTCTCAACTGCGCCTCCTCCCCTCCTC
CCACCCCCCTCACCTCTCAGAACAACGTGGACGGTACCCCCTTCGTCAAG
AACCTGAACACTGCTGGCGTCATTCCGGGTATCAAGGTCGACATGGGTCT
GTCGCCCCTTCCCGGGGGACACCCCGTCGAGACCTGGTGCACGGGCTTGG
ACGGACTCGTCGAGCGCGCTCAGAAGTACTACGCTCAAGGTGTGTGTTCG
TGCCGATCTGCTTGCCTCACTTCCCTCCCTTCTCCTTTTTATTTCTTCCT
CACATCCGTTTTTAAGCCTTATACTTTCTTATACGAGGCCGAGGATGACT
GCGTCAATGTTTGGTTTCTGACCCCTTCACCCCTCCCTCCCTCCCTCCCT
CTCCCCTCCCTTCAGGCGCGCGTTTCGCGAAGTGGCGTGCCGTGCTCCAG
ATCACCTCCGACGGTGCCCCCTCTGAGCTCTCCATCCAAGAGAACGCGTG
GGGCCTGGCCCGTTACGCGCGTGCCGTGCAAGAGGGTGGCCTGGTTCCCA
TTGTCGAGCCCGAGATCCTGATGGACGGCGACCACAATATCGAGACGACT
GCGCGTGTGCAGGAGCGTGTCTTGGCCGCGGTCTACAAGGCTCTGTCTGA
CAACGGCGTGTATCTCGAGGGCTCCCTGCTCAAGCCCTCTATGACTCTCC
CCGGAGCCGACTGCGGGGAAACCGTCACGTCCGAGAAGATCGCTGAGTAT
ACGGTTCGCACCCTCGAGCGCCACGTCCCTTCGTCCGTACCTGGTGTGAT
GTTCCTCTCCGGCGGCATGTCCGAGGAGGAGGCCTCCATCAACCTGAACG
CCCTGAACAAGCGCGCTCGTAAGGGCCCGTGGTCCTTGTCCTTTTCCTAC
GGCCGTGCTCTGCAGCAGTCTTGCCTCAAGGCGTGGCAGGGGAAGCAGGA
GAACGTCCCCGCCGCCCGCGCGGCTTTGTTGGCCCGTGCCCAGGCTAACA
GCGAGGCCAACCTGGGAAAGTACGTCGCGGGCTCCCAGCCGTCGGCGGAC
GAGACCCTGTTCGTGAAGGGGTATAAGTACTAAGGACGAGGTGGTCGGTA
GTGAAAGAAGGGAGGAGGGCGATGGGAGGGAGGGAAGGAGGGAGGGAGAC
GGTCGGCAGGCGGATGGAAAGGTATTTTTTTTCCGAGCTGGCTTTTTTTG
GGTCC back to topCoding sequence (CDS) from alignment at scaffold_13:540588..542492+ >mRNA_5490 ID=mRNA_5490|Name=jgi.p|Nanoce1779_2|592704|organism=Nannochloropsis oceanica|type=CDS|length=4596bp|location=Sequence derived from alignment at scaffold_13:540588..542492+ (Nannochloropsis oceanica)
ATGGCTCGCCTCTTCGTCACCGTTGCCTCCTTCGTGGCCGCCTGTGCCAC
CGTCAACGCCTTCCAGGTGCCCCGTATGTCTTTGGACAAGTACAGGAGCG
AGCTGGCCGAGACCGCTAAGAAGATTGCCGCCCCCGGCAAGGGTATTTTG
GCCGTAGATGAGTCGACCAAGACCATCGGCAAGCGTTTGGAAGGGATCAG
CGTGGAGAACACGGAGGCCAACCGTCAGGCGTACCGTGGTCTCCTCTTCA
CCACCCCCAACATCGGCAACTACATCTCCGGCGCCATCCTCTACGAGGAG
ACTCTCTTCCAGAACAACGTGGACGGTACCCCCTTCGTCAAGAACCTGAA
CACTGCTGGCGTCATTCCGGGTATCAAGGTCGACATGGGTCTGTCGCCCC
TTCCCGGGGGACACCCCGTCGAGACCTGGTGCACGGGCTTGGACGGACTC
GTCGAGCGCGCTCAGAAGTACTACGCTCAAGGCGCGCGTTTCGCGAAGTG
GCGTGCCGTGCTCCAGATCACCTCCGACGGTGCCCCCTCTGAGCTCTCCA
TCCAAGAGAACGCGTGGGGCCTGGCCCGTTACGCGCGTGCCGTGCAAGAG
GGTGGCCTGGTTCCCATTGTCGAGCCCGAGATCCTGATGGACGGCGACCA
CAATATCGAGACGACTGCGCGTGTGCAGGAGCGTGTCTTGGCCGCGGTCT
ACAAGGCTCTGTCTGACAACGGCGTGTATCTCGAGGGCTCCCTGCTCAAG
CCCTCTATGACTCTCCCCGGAGCCGACTGCGGGGAAACCGTCACGTCCGA
GAAGATCGCTGAGTATACGGTTCGCACCCTCGAGCGCCACGTCCCTTCGT
CCGTACCTGGTGTGATGTTCCTCTCCGGCGGCATGTCCGAGGAGGAGGCC
TCCATCAACCTGAACGCCCTGAACAAGCGCGCTCGTAAGGGCCCGTGGTC
CTTGTCCTTTTCCTACGGCCGTGCTCTGCAGCAGTCTTGCCTCAAGGCGT
GGCAGGGGAAGCAGGAGAACGTCCCCGCCGCCCGCGCGGCTTTGTTGGCC
CGTGCCCAGGCTAACAGCGAGGCCAACCTGGGAAAGTACGTCGCGGGCTC
CCAGCCGTCGGCGGACGAGACCCTGTTCGTGAAGGGGTATAAGTACTAAA
TGGCTCGCCTCTTCGTCACCGTTGCCTCCTTCGTGGCCGCCTGTGCCACC
GTCAACGCCTTCCAGGTGCCCCGTATGTCTTTGGACAAGTACAGGAGCGA
GCTGGCCGAGACCGCTAAGAAGATTGCCGCCCCCGGCAAGGGTATTTTGG
CCGTAGATGAGTCGACCAAGACCATCGGCAAGCGTTTGGAAGGGATCAGC
GTGGAGAACACGGAGGCCAACCGTCAGGCGTACCGTGGTCTCCTCTTCAC
CACCCCCAACATCGGCAACTACATCTCCGGCGCCATCCTCTACGAGGAGA
CTCTCTTCCAGAACAACGTGGACGGTACCCCCTTCGTCAAGAACCTGAAC
ACTGCTGGCGTCATTCCGGGTATCAAGGTCGACATGGGTCTGTCGCCCCT
TCCCGGGGGACACCCCGTCGAGACCTGGTGCACGGGCTTGGACGGACTCG
TCGAGCGCGCTCAGAAGTACTACGCTCAAGGCGCGCGTTTCGCGAAGTGG
CGTGCCGTGCTCCAGATCACCTCCGACGGTGCCCCCTCTGAGCTCTCCAT
CCAAGAGAACGCGTGGGGCCTGGCCCGTTACGCGCGTGCCGTGCAAGAGG
GTGGCCTGGTTCCCATTGTCGAGCCCGAGATCCTGATGGACGGCGACCAC
AATATCGAGACGACTGCGCGTGTGCAGGAGCGTGTCTTGGCCGCGGTCTA
CAAGGCTCTGTCTGACAACGGCGTGTATCTCGAGGGCTCCCTGCTCAAGC
CCTCTATGACTCTCCCCGGAGCCGACTGCGGGGAAACCGTCACGTCCGAG
AAGATCGCTGAGTATACGGTTCGCACCCTCGAGCGCCACGTCCCTTCGTC
CGTACCTGGTGTGATGTTCCTCTCCGGCGGCATGTCCGAGGAGGAGGCCT
CCATCAACCTGAACGCCCTGAACAAGCGCGCTCGTAAGGGCCCGTGGTCC
TTGTCCTTTTCCTACGGCCGTGCTCTGCAGCAGTCTTGCCTCAAGGCGTG
GCAGGGGAAGCAGGAGAACGTCCCCGCCGCCCGCGCGGCTTTGTTGGCCC
GTGCCCAGGCTAACAGCGAGGCCAACCTGGGAAAGTACGTCGCGGGCTCC
CAGCCGTCGGCGGACGAGACCCTGTTCGTGAAGGGGTATAAGTACTAAAT
GGCTCGCCTCTTCGTCACCGTTGCCTCCTTCGTGGCCGCCTGTGCCACCG
TCAACGCCTTCCAGGTGCCCCGTATGTCTTTGGACAAGTACAGGAGCGAG
CTGGCCGAGACCGCTAAGAAGATTGCCGCCCCCGGCAAGGGTATTTTGGC
CGTAGATGAGTCGACCAAGACCATCGGCAAGCGTTTGGAAGGGATCAGCG
TGGAGAACACGGAGGCCAACCGTCAGGCGTACCGTGGTCTCCTCTTCACC
ACCCCCAACATCGGCAACTACATCTCCGGCGCCATCCTCTACGAGGAGAC
TCTCTTCCAGAACAACGTGGACGGTACCCCCTTCGTCAAGAACCTGAACA
CTGCTGGCGTCATTCCGGGTATCAAGGTCGACATGGGTCTGTCGCCCCTT
CCCGGGGGACACCCCGTCGAGACCTGGTGCACGGGCTTGGACGGACTCGT
CGAGCGCGCTCAGAAGTACTACGCTCAAGGCGCGCGTTTCGCGAAGTGGC
GTGCCGTGCTCCAGATCACCTCCGACGGTGCCCCCTCTGAGCTCTCCATC
CAAGAGAACGCGTGGGGCCTGGCCCGTTACGCGCGTGCCGTGCAAGAGGG
TGGCCTGGTTCCCATTGTCGAGCCCGAGATCCTGATGGACGGCGACCACA
ATATCGAGACGACTGCGCGTGTGCAGGAGCGTGTCTTGGCCGCGGTCTAC
AAGGCTCTGTCTGACAACGGCGTGTATCTCGAGGGCTCCCTGCTCAAGCC
CTCTATGACTCTCCCCGGAGCCGACTGCGGGGAAACCGTCACGTCCGAGA
AGATCGCTGAGTATACGGTTCGCACCCTCGAGCGCCACGTCCCTTCGTCC
GTACCTGGTGTGATGTTCCTCTCCGGCGGCATGTCCGAGGAGGAGGCCTC
CATCAACCTGAACGCCCTGAACAAGCGCGCTCGTAAGGGCCCGTGGTCCT
TGTCCTTTTCCTACGGCCGTGCTCTGCAGCAGTCTTGCCTCAAGGCGTGG
CAGGGGAAGCAGGAGAACGTCCCCGCCGCCCGCGCGGCTTTGTTGGCCCG
TGCCCAGGCTAACAGCGAGGCCAACCTGGGAAAGTACGTCGCGGGCTCCC
AGCCGTCGGCGGACGAGACCCTGTTCGTGAAGGGGTATAAGTACTAAATG
GCTCGCCTCTTCGTCACCGTTGCCTCCTTCGTGGCCGCCTGTGCCACCGT
CAACGCCTTCCAGGTGCCCCGTATGTCTTTGGACAAGTACAGGAGCGAGC
TGGCCGAGACCGCTAAGAAGATTGCCGCCCCCGGCAAGGGTATTTTGGCC
GTAGATGAGTCGACCAAGACCATCGGCAAGCGTTTGGAAGGGATCAGCGT
GGAGAACACGGAGGCCAACCGTCAGGCGTACCGTGGTCTCCTCTTCACCA
CCCCCAACATCGGCAACTACATCTCCGGCGCCATCCTCTACGAGGAGACT
CTCTTCCAGAACAACGTGGACGGTACCCCCTTCGTCAAGAACCTGAACAC
TGCTGGCGTCATTCCGGGTATCAAGGTCGACATGGGTCTGTCGCCCCTTC
CCGGGGGACACCCCGTCGAGACCTGGTGCACGGGCTTGGACGGACTCGTC
GAGCGCGCTCAGAAGTACTACGCTCAAGGCGCGCGTTTCGCGAAGTGGCG
TGCCGTGCTCCAGATCACCTCCGACGGTGCCCCCTCTGAGCTCTCCATCC
AAGAGAACGCGTGGGGCCTGGCCCGTTACGCGCGTGCCGTGCAAGAGGGT
GGCCTGGTTCCCATTGTCGAGCCCGAGATCCTGATGGACGGCGACCACAA
TATCGAGACGACTGCGCGTGTGCAGGAGCGTGTCTTGGCCGCGGTCTACA
AGGCTCTGTCTGACAACGGCGTGTATCTCGAGGGCTCCCTGCTCAAGCCC
TCTATGACTCTCCCCGGAGCCGACTGCGGGGAAACCGTCACGTCCGAGAA
GATCGCTGAGTATACGGTTCGCACCCTCGAGCGCCACGTCCCTTCGTCCG
TACCTGGTGTGATGTTCCTCTCCGGCGGCATGTCCGAGGAGGAGGCCTCC
ATCAACCTGAACGCCCTGAACAAGCGCGCTCGTAAGGGCCCGTGGTCCTT
GTCCTTTTCCTACGGCCGTGCTCTGCAGCAGTCTTGCCTCAAGGCGTGGC
AGGGGAAGCAGGAGAACGTCCCCGCCGCCCGCGCGGCTTTGTTGGCCCGT
GCCCAGGCTAACAGCGAGGCCAACCTGGGAAAGTACGTCGCGGGCTCCCA
GCCGTCGGCGGACGAGACCCTGTTCGTGAAGGGGTATAAGTACTAA back to top
|