jgi.p|Nanoce1779_2|577661, mRNA_549 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577661
Unique Name	mRNA_549
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2491
Alignment location	scaffold_3:1326760..1329250 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577747
Track	FilteredModels2
ProteinId	577661

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1326760..1329250 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577661	gene_549	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577661	mRNA_549-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_549	CDS_549	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1326760..1329250+
coding sequence from alignment at scaffold_3:1326760..1329250+

mRNA sequence

>mRNA_549 ID=mRNA_549|Name=jgi.p|Nanoce1779_2|577661|organism=Nannochloropsis oceanica|type=mRNA|length=2491bp
GTTAAATATTGAGTCCATGGTGTGTGCTGTGGGTGTTGGGAGGTGTGTGG
GGCGTTGTGGTGGTTGGTTGGTGAGCTGGATAGAACAACTTGTTGTGAAG
ACACGAGGTGGCGTCCTCGTGATGATGGTGGGGATGACTGAGGGGAGACA
AACAATCAAATGATGGCATGCCTCTTCTCTAATCTTAGCGGCTACATTGG
CCTCGGTCAGGCAGGTATGATCCCCTAGCTGTCTGTGTTTCTGGCATCGA
TGTAGCGTGTATGAGAGTAGTTCTGTGCTTTTTCCCTGTTTGCCATTTCT
ACCCGGACCCCTCGCCCATTTTGATAACCATAATAATTGGTTATCAAATG
AGAGGGCCTGAGGGACTGCGAGGCTTTTGTGTAGCAAAGCCACCATTTTA
TGCTGGTACATTTATGCAGTTATCACGCACCCTTATGCAGCCACCACACA
CGCCCACTGAAGGCCTAAAAGCTACTCTCGATCTGTCCCTACCCCTGCAC
GTTTCCCCGCCCTGCCTCCTCTCCAGCACACCCTCTCCAGGACCCCAGCC
AAGATGAACAAGGACTGGAATGGCCTGGCCAAGTCAGGTGGCCTGGAGAA
GCTCAAGGTGGGCGAGCTCAAGGGCTTTTTGAAGGACCATGGTATTTCTC
AAACAGGGGAGAAAGGAACACTTATGTTCCGCATAAAGGCGTTTTTGGAC
GGGGAGCGTCTGAAGATAGACGGCCTCAACCCCGCCTTGCTCAAGGCAGG
TGAGCTGAAGAAGGAGTGTGCGAAGCGCGGGCTCTCGCCAATGGGTTACC
CAGACGAACTGCTCGAGAGTCTAATCGGCTACCTCAAGACACACGGTAGC
GGGGACAGTACTGCTGCTGCTAGTGGTGAGAGACCCAGCGCCCAGGAGAA
AACGGGTGCAGAAAGTGGGGAAAACGAGGAGGAGGGCAATAAAGGTGGTA
ATGCAACTTTAGCTTTGATCCAACGCATTGTGGAGCTGGGGGAGGAGGAC
GACTGGGGTGGGATCCTAGGCTTGGGTGCGACTGGGCAGAAGCTGACGAA
GCAGAGCCCAACAGCCGATCTTCGCAAGGCTTACCACCGCCTTTCTCTTT
TGGTGCATCCAGATCGGGTAGGCCCGGGGATGGGGGATGCAACGCGTGCT
TTCCAGTCAGTGGTGACGGCTTTTGAGCGTTTATCGGAGCCTGAGCTGGA
GGAGGAGGAGGGGAAGAAGGATGCTAAGGCAGGGAAGAAGAAAGAGAAGG
GCAAGACTCTTGCACGGTCCAACGAGAATTGTTTCCGAACGCGGGTGTAT
TGTCCTCGCTGCAAAACGGAGTGGGGTCAGTCTATTGATGGCCTGCCTCC
CTACACCTACAACTATATGATGATGGGGCTGAAGACCTTCGTGTGCTCCA
CCTGCCTCTGCGATTTCGGGGCACTCACCGCCATCCACAAATGTCCGCAT
TGCCGCAGGTCCTTCGAGTACGATCCGCACGACTATCACCGGGAGATCAC
TTGTGGGAATAAAAATTGTGGGAAGCCTTTTGGCTTTTACCTCTTTCAAG
TCTCGGATCGCGTCGAGAATGAACTCAAGGCGGAGCTCAAGGCGGAGCAG
GAACGACGGATCAGAGCGCGAGAGAGTAAGATGGCACGGTTGGTGCGGTC
GAAGCGGAAGCATGCGGAAAAAGATAACGAGGAGAGAGAGCGCGAGGATA
GGCGGTTAAAACTTCGCTTGTTTGTACAGGGCTTGGTGGATGATTGTCCG
CAGTGTGGGGAGGAGCCAGGGTGTGCGCCTGAGGATCGAGAGGCACACAA
GGAGCATTTGAGGCAGTGTCAAGACAAGGACAAGATTTCCAAGCACCAGA
AGAAGATTCGGATGGAGGAGGCAAGGCAGGCGGAGAAGGAGGCAAGGACA
ACGGCGCAGGAGGACATGCAGTCGTTGCGGACGTGGGAGTTCCTGGGAGG
GAATGAGGGGGAGCTGTGGCTGTTGACTGATGGTCAGCTTGAACGCAAGT
GCAGGGAGAAAGGTTTACTGCCAAAGGAAGAGGAGATGAAGGGGGCAGGT
ACCTGGAAGAGGAAGAAGAGCACTCGTCCTATGAGCAAGGACGAGATGAT
CGCGCAGCTTGTACAGCACGCTAATAAGAGGGCAGCGCTTCGGCTCACGG
ATGGGACAGAAAAGGGTGCCGCTGGTGTCAAGAAATGTAGGAAAGGAGGT
AACACCATGACTCGTGAATCTTTGCCGGACAACCTTTATAGTATGTCCCT
TTCACAGCTTCGGTCCGTGTGTGCGGCGCATGGGTACGTGCCTCAGGCGA
CCACGCAGAGCGGGTTGGTCCGGGAGATGGAGCGGGTAGTAGCCAAGGCA
GAAGGACATGAGGAGACATTGTTACTGGAAGACTTGAAGTGAATGAGAGG
GGAGGGCGGGAAGGATCACAGGGGGAAATTTCACAAGATTATGCGGTACA
TACACAGAGTTAAATTAGCATTAAGCACACGAACGAAGAAG

protein sequence of jgi.p|Nanoce1779_2|577661

>mRNA_549-protein ID=mRNA_549-protein|Name=jgi.p|Nanoce1779_2|577661|organism=Nannochloropsis oceanica|type=polypeptide|length=613bp
MNKDWNGLAKSGGLEKLKVGELKGFLKDHGISQTGEKGTLMFRIKAFLDG
ERLKIDGLNPALLKAGELKKECAKRGLSPMGYPDELLESLIGYLKTHGSG
DSTAAASGERPSAQEKTGAESGENEEEGNKGGNATLALIQRIVELGEEDD
WGGILGLGATGQKLTKQSPTADLRKAYHRLSLLVHPDRVGPGMGDATRAF
QSVVTAFERLSEPELEEEEGKKDAKAGKKKEKGKTLARSNENCFRTRVYC
PRCKTEWGQSIDGLPPYTYNYMMMGLKTFVCSTCLCDFGALTAIHKCPHC
RRSFEYDPHDYHREITCGNKNCGKPFGFYLFQVSDRVENELKAELKAEQE
RRIRARESKMARLVRSKRKHAEKDNEEREREDRRLKLRLFVQGLVDDCPQ
CGEEPGCAPEDREAHKEHLRQCQDKDKISKHQKKIRMEEARQAEKEARTT
AQEDMQSLRTWEFLGGNEGELWLLTDGQLERKCREKGLLPKEEEMKGAGT
WKRKKSTRPMSKDEMIAQLVQHANKRAALRLTDGTEKGAAGVKKCRKGGN
TMTRESLPDNLYSMSLSQLRSVCAAHGYVPQATTQSGLVREMERVVAKAE
GHEETLLLEDLK*

mRNA from alignment at scaffold_3:1326760..1329250+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_549 ID=mRNA_549|Name=jgi.p|Nanoce1779_2|577661|organism=Nannochloropsis oceanica|type=mRNA|length=2491bp|location=Sequence derived from alignment at scaffold_3:1326760..1329250+ (Nannochloropsis oceanica)
GTTAAATATTGAGTCCATGGTGTGTGCTGTGGGTGTTGGGAGGTGTGTGG
GGCGTTGTGGTGGTTGGTTGGTGAGCTGGATAGAACAACTTGTTGTGAAG
ACACGAGGTGGCGTCCTCGTGATGATGGTGGGGATGACTGAGGGGAGACA
AACAATCAAATGATGGCATGCCTCTTCTCTAATCTTAGCGGCTACATTGG
CCTCGGTCAGGCAGGTATGATCCCCTAGCTGTCTGTGTTTCTGGCATCGA
TGTAGCGTGTATGAGAGTAGTTCTGTGCTTTTTCCCTGTTTGCCATTTCT
ACCCGGACCCCTCGCCCATTTTGATAACCATAATAATTGGTTATCAAATG
AGAGGGCCTGAGGGACTGCGAGGCTTTTGTGTAGCAAAGCCACCATTTTA
TGCTGGTACATTTATGCAGTTATCACGCACCCTTATGCAGCCACCACACA
CGCCCACTGAAGGCCTAAAAGCTACTCTCGATCTGTCCCTACCCCTGCAC
GTTTCCCCGCCCTGCCTCCTCTCCAGCACACCCTCTCCAGGACCCCAGCC
AAGATGAACAAGGACTGGAATGGCCTGGCCAAGTCAGGTGGCCTGGAGAA
GCTCAAGGTGGGCGAGCTCAAGGGCTTTTTGAAGGACCATGGTATTTCTC
AAACAGGGGAGAAAGGAACACTTATGTTCCGCATAAAGGCGTTTTTGGAC
GGGGAGCGTCTGAAGATAGACGGCCTCAACCCCGCCTTGCTCAAGGCAGG
TGAGCTGAAGAAGGAGTGTGCGAAGCGCGGGCTCTCGCCAATGGGTTACC
CAGACGAACTGCTCGAGAGTCTAATCGGCTACCTCAAGACACACGGTAGC
GGGGACAGTACTGCTGCTGCTAGTGGTGAGAGACCCAGCGCCCAGGAGAA
AACGGGTGCAGAAAGTGGGGAAAACGAGGAGGAGGGCAATAAAGGTGGTA
ATGCAACTTTAGCTTTGATCCAACGCATTGTGGAGCTGGGGGAGGAGGAC
GACTGGGGTGGGATCCTAGGCTTGGGTGCGACTGGGCAGAAGCTGACGAA
GCAGAGCCCAACAGCCGATCTTCGCAAGGCTTACCACCGCCTTTCTCTTT
TGGTGCATCCAGATCGGGTAGGCCCGGGGATGGGGGATGCAACGCGTGCT
TTCCAGTCAGTGGTGACGGCTTTTGAGCGTTTATCGGAGCCTGAGCTGGA
GGAGGAGGAGGGGAAGAAGGATGCTAAGGCAGGGAAGAAGAAAGAGAAGG
GCAAGACTCTTGCACGGTCCAACGAGAATTGTTTCCGAACGCGGGTGTAT
TGTCCTCGCTGCAAAACGGAGTGGGGTCAGTCTATTGATGGCCTGCCTCC
CTACACCTACAACTATATGATGATGGGGCTGAAGACCTTCGTGTGCTCCA
CCTGCCTCTGCGATTTCGGGGCACTCACCGCCATCCACAAATGTCCGCAT
TGCCGCAGGTCCTTCGAGTACGATCCGCACGACTATCACCGGGAGATCAC
TTGTGGGAATAAAAATTGTGGGAAGCCTTTTGGCTTTTACCTCTTTCAAG
TCTCGGATCGCGTCGAGAATGAACTCAAGGCGGAGCTCAAGGCGGAGCAG
GAACGACGGATCAGAGCGCGAGAGAGTAAGATGGCACGGTTGGTGCGGTC
GAAGCGGAAGCATGCGGAAAAAGATAACGAGGAGAGAGAGCGCGAGGATA
GGCGGTTAAAACTTCGCTTGTTTGTACAGGGCTTGGTGGATGATTGTCCG
CAGTGTGGGGAGGAGCCAGGGTGTGCGCCTGAGGATCGAGAGGCACACAA
GGAGCATTTGAGGCAGTGTCAAGACAAGGACAAGATTTCCAAGCACCAGA
AGAAGATTCGGATGGAGGAGGCAAGGCAGGCGGAGAAGGAGGCAAGGACA
ACGGCGCAGGAGGACATGCAGTCGTTGCGGACGTGGGAGTTCCTGGGAGG
GAATGAGGGGGAGCTGTGGCTGTTGACTGATGGTCAGCTTGAACGCAAGT
GCAGGGAGAAAGGTTTACTGCCAAAGGAAGAGGAGATGAAGGGGGCAGGT
ACCTGGAAGAGGAAGAAGAGCACTCGTCCTATGAGCAAGGACGAGATGAT
CGCGCAGCTTGTACAGCACGCTAATAAGAGGGCAGCGCTTCGGCTCACGG
ATGGGACAGAAAAGGGTGCCGCTGGTGTCAAGAAATGTAGGAAAGGAGGT
AACACCATGACTCGTGAATCTTTGCCGGACAACCTTTATAGTATGTCCCT
TTCACAGCTTCGGTCCGTGTGTGCGGCGCATGGGTACGTGCCTCAGGCGA
CCACGCAGAGCGGGTTGGTCCGGGAGATGGAGCGGGTAGTAGCCAAGGCA
GAAGGACATGAGGAGACATTGTTACTGGAAGACTTGAAGTGAATGAGAGG
GGAGGGCGGGAAGGATCACAGGGGGAAATTTCACAAGATTATGCGGTACA
TACACAGAGTTAAATTAGCATTAAGCACACGAACGAAGAAG

Coding sequence (CDS) from alignment at scaffold_3:1326760..1329250+

>mRNA_549 ID=mRNA_549|Name=jgi.p|Nanoce1779_2|577661|organism=Nannochloropsis oceanica|type=CDS|length=1839bp|location=Sequence derived from alignment at scaffold_3:1326760..1329250+ (Nannochloropsis oceanica)
ATGAACAAGGACTGGAATGGCCTGGCCAAGTCAGGTGGCCTGGAGAAGCT
CAAGGTGGGCGAGCTCAAGGGCTTTTTGAAGGACCATGGTATTTCTCAAA
CAGGGGAGAAAGGAACACTTATGTTCCGCATAAAGGCGTTTTTGGACGGG
GAGCGTCTGAAGATAGACGGCCTCAACCCCGCCTTGCTCAAGGCAGGTGA
GCTGAAGAAGGAGTGTGCGAAGCGCGGGCTCTCGCCAATGGGTTACCCAG
ACGAACTGCTCGAGAGTCTAATCGGCTACCTCAAGACACACGGTAGCGGG
GACAGTACTGCTGCTGCTAGTGGTGAGAGACCCAGCGCCCAGGAGAAAAC
GGGTGCAGAAAGTGGGGAAAACGAGGAGGAGGGCAATAAAGGTGGTAATG
CAACTTTAGCTTTGATCCAACGCATTGTGGAGCTGGGGGAGGAGGACGAC
TGGGGTGGGATCCTAGGCTTGGGTGCGACTGGGCAGAAGCTGACGAAGCA
GAGCCCAACAGCCGATCTTCGCAAGGCTTACCACCGCCTTTCTCTTTTGG
TGCATCCAGATCGGGTAGGCCCGGGGATGGGGGATGCAACGCGTGCTTTC
CAGTCAGTGGTGACGGCTTTTGAGCGTTTATCGGAGCCTGAGCTGGAGGA
GGAGGAGGGGAAGAAGGATGCTAAGGCAGGGAAGAAGAAAGAGAAGGGCA
AGACTCTTGCACGGTCCAACGAGAATTGTTTCCGAACGCGGGTGTATTGT
CCTCGCTGCAAAACGGAGTGGGGTCAGTCTATTGATGGCCTGCCTCCCTA
CACCTACAACTATATGATGATGGGGCTGAAGACCTTCGTGTGCTCCACCT
GCCTCTGCGATTTCGGGGCACTCACCGCCATCCACAAATGTCCGCATTGC
CGCAGGTCCTTCGAGTACGATCCGCACGACTATCACCGGGAGATCACTTG
TGGGAATAAAAATTGTGGGAAGCCTTTTGGCTTTTACCTCTTTCAAGTCT
CGGATCGCGTCGAGAATGAACTCAAGGCGGAGCTCAAGGCGGAGCAGGAA
CGACGGATCAGAGCGCGAGAGAGTAAGATGGCACGGTTGGTGCGGTCGAA
GCGGAAGCATGCGGAAAAAGATAACGAGGAGAGAGAGCGCGAGGATAGGC
GGTTAAAACTTCGCTTGTTTGTACAGGGCTTGGTGGATGATTGTCCGCAG
TGTGGGGAGGAGCCAGGGTGTGCGCCTGAGGATCGAGAGGCACACAAGGA
GCATTTGAGGCAGTGTCAAGACAAGGACAAGATTTCCAAGCACCAGAAGA
AGATTCGGATGGAGGAGGCAAGGCAGGCGGAGAAGGAGGCAAGGACAACG
GCGCAGGAGGACATGCAGTCGTTGCGGACGTGGGAGTTCCTGGGAGGGAA
TGAGGGGGAGCTGTGGCTGTTGACTGATGGTCAGCTTGAACGCAAGTGCA
GGGAGAAAGGTTTACTGCCAAAGGAAGAGGAGATGAAGGGGGCAGGTACC
TGGAAGAGGAAGAAGAGCACTCGTCCTATGAGCAAGGACGAGATGATCGC
GCAGCTTGTACAGCACGCTAATAAGAGGGCAGCGCTTCGGCTCACGGATG
GGACAGAAAAGGGTGCCGCTGGTGTCAAGAAATGTAGGAAAGGAGGTAAC
ACCATGACTCGTGAATCTTTGCCGGACAACCTTTATAGTATGTCCCTTTC
ACAGCTTCGGTCCGTGTGTGCGGCGCATGGGTACGTGCCTCAGGCGACCA
CGCAGAGCGGGTTGGTCCGGGAGATGGAGCGGGTAGTAGCCAAGGCAGAA
GGACATGAGGAGACATTGTTACTGGAAGACTTGAAGTGA

Synonyms

Publications