jgi.p|Nanoce1779_2|592700, mRNA_5489 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592700
Unique NamemRNA_5489
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2266
Alignment locationscaffold_13:537399..539664 -

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Properties
Property NameValue
TranscriptId592786
TrackFilteredModels2
ProteinId592700
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:537399..539664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592700gene_5489Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592700mRNA_5489-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5489CDS_5489Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5489 ID=mRNA_5489|Name=jgi.p|Nanoce1779_2|592700|organism=Nannochloropsis oceanica|type=mRNA|length=2266bp
AACAGGCGGGGCAAACGGTAGAAGAGATGGAAGCATCCTCTCCTCACCCC
CAGCCTCTTTCCCCCTCCGTGCAACCATCATGGCGACTGGGGTCAGACAC
AGCAGCAGCGCGACCTCTCCCCCACCCTCCTGCCTTCGATGTGGCACAGT
CACTGGCTCTCACAGTCACCAGCAGTAGCGGCACGAGCCAAGGCAAAAAG
AGGAAACTTCCCTCCACCAAGGCAAGTGCTTACCGCCCCGCTGCCACCAC
AACCAACGCGGATGCAGCAAGACCGCACATCCCCACATCAGCACCACAAC
TCAATCAAGACGCAGCAGGGGCCAAATCCAAGACACACAAAAGCTCTCGT
AAAAGCAGAGGCGGTAGTGGTGGTGCTGCTGATGGTAAACCCAGCGGGAG
CAGCAGCCTTATAAGCAGCAGCAAGACGAAGAGTTCACACCACCTTGAGA
CAGCCAAGGCTAACATGGCAGGGACTGAGACAGTGGTGCTCATATCGCGT
ACCACTACTCATTCTCCCCTTTCTTCTTCCAGCGATGATGGAGTCGATCC
CAACGCCGCCATGCCCGTGCCAGTGGTAAACGACACACCTCCTCCTCCAC
CTCCTCCTCCACCTCCTGATTCTAGTATTCCCGTCGTTCAGCCTCCTGCA
ACAGGGAAAATCTGCAAGGCAAAGAAGAAGAAAACGGCCATCACTACCAG
TAAGAAATCAAGGCAAGCCATAGCAGCTGCCACTGGTGTCCTGTCTCTTG
CCCCCCCTCCACCTCCTTCCTCTCTTCCACGACCTCCCCAGTCCAGTTCC
TCAACTCCCTACCTAAACCCCCCCAAAAACAATGCAGCAGTTGTGGCAGC
AGCAACACCGATGATGAGCACCACATCGATGACAATAGCACGACAAGATG
TAGTAGAAGGGATGGAAGAAGAAGAAGAGGAAGGAAAAGAAATAGAAAAA
GAAGGAGAAGGAATAGAAGATGACGACCACCATCACCAACGACAACAGCG
GCAGCAGCGACAGCACCAACAATACCAACAACAACCCACCCTAAAACAAT
ATCACTTGCTCAGGCGACCAGACAAATCCTGGATAAGTCGTTCCTTCTCC
TCCGCTACCGCCATCTCCCTCCCCCCTCCTCTTCCTGCTCCCAAGACCCG
CTACCTCTTGCACACCAAGGAAGCCTACGCAATATTTCTTCGCGAATTCC
TACAAAACTGGGGAGGGAAGCCCATCCTCCCTGCCTTCCTTCCCCCCCCT
CATTCAGCCCCTACTTCTTCCTCGAAGCTTATCCGGGCCGGCAAAATCAA
AACCACCCTCCCCTCTCTCCTTCGGCCCCTCACCCACCTCCAGCTCCTCC
TACTCGCCCGGCACGAGTGGTCTACTCTATCCCTCCGTCGTAAGCGCCGC
TACTTCAAATCTCACATCACTGAAGCCCGTGGTGGCATCTACCCCACCCA
CATTCGAAGCAAGGCCGAAGCTGCTGCCTGCACTGCTGCTGCTGTTGCGC
AAAGACAGCGAGAGGATGCCCGGCCAGCAACAATGAAAGAAATGTTTCCT
TTTTTTGGTGGTGTTGGTCGTGGTAGTGGTGGCAGTGGCAGTGATTCTGC
TGCTGACATACCTGCGGGAATTGGAGGTGTGTGGCGAGGTCCACCCCCTA
CTAATTTGGTGGCGTTGGTGATGAGGGAAGAGCGTTGTAATGTTGCGGAG
GCAAGAGAGAGGGTGAGAAAGATGACGGAGAGAGAGAGGAGGAGAAGGAA
GGAGGAGGTGAGGGAGGGAAAGGAGCGCTATGAGAAGGAGGTGGAGGAGT
ATTGTGTTATGTGGCAGTTGCCGGTGGTGGTGGGTGGGGAGGAAGGGAAG
GGAATGGAGGAGGAGAGGGAGCGGGACGAAGAAGCAGCAGTTGAGGAAGA
ACAGAAAGAAGATGATGATGATGAAGAAGGTAATGATGAGGATGAAGGTG
ATGGTGGTGATGATGATGATGACGGTGAAAATGATGATAACGAAGAGAAT
GAGGGTGAGGAAGACGTGCCGTTGTCGTGCTTGTTGAGTGCGGTGAAGGG
AGGTAAAAAGAGAAGATGGACCATCACAGTAAGTAAATAATCTGAAGGCC
ACTAGGGCGAACGTGCGTTGCCAGCACGAAAGTAAAAAAGTATAGCGGTA
GTGAGGAAAGATGCATACTCGTTAATCCATACACGTTGAGAGACGATTCC
TGGCTTAGTGTACACCACCAAAAAAGTGTAAAAAAGTTTAATAAATGTCC
TGAACAGAAGTAAAAC
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protein sequence of jgi.p|Nanoce1779_2|592700

>mRNA_5489-protein ID=mRNA_5489-protein|Name=jgi.p|Nanoce1779_2|592700|organism=Nannochloropsis oceanica|type=polypeptide|length=686bp
MEASSPHPQPLSPSVQPSWRLGSDTAAARPLPHPPAFDVAQSLALTVTSS
SGTSQGKKRKLPSTKASAYRPAATTTNADAARPHIPTSAPQLNQDAAGAK
SKTHKSSRKSRGGSGGAADGKPSGSSSLISSSKTKSSHHLETAKANMAGT
ETVVLISRTTTHSPLSSSSDDGVDPNAAMPVPVVNDTPPPPPPPPPPDSS
IPVVQPPATGKICKAKKKKTAITTSKKSRQAIAAATGVLSLAPPPPPSSL
PRPPQSSSSTPYLNPPKNNAAVVAAATPMMSTTSMTIARQDVVEGMEEEE
EEGKEIEKEGEGIEDDDHHHQRQQRQQRQHQQYQQQPTLKQYHLLRRPDK
SWISRSFSSATAISLPPPLPAPKTRYLLHTKEAYAIFLREFLQNWGGKPI
LPAFLPPPHSAPTSSSKLIRAGKIKTTLPSLLRPLTHLQLLLLARHEWST
LSLRRKRRYFKSHITEARGGIYPTHIRSKAEAAACTAAAVAQRQREDARP
ATMKEMFPFFGGVGRGSGGSGSDSAADIPAGIGGVWRGPPPTNLVALVMR
EERCNVAEARERVRKMTERERRRRKEEVREGKERYEKEVEEYCVMWQLPV
VVGGEEGKGMEEERERDEEAAVEEEQKEDDDDEEGNDEDEGDGGDDDDDG
ENDDNEENEGEEDVPLSCLLSAVKGGKKRRWTITVS
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mRNA from alignment at scaffold_13:537399..539664-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5489 ID=mRNA_5489|Name=jgi.p|Nanoce1779_2|592700|organism=Nannochloropsis oceanica|type=mRNA|length=2266bp|location=Sequence derived from alignment at scaffold_13:537399..539664- (Nannochloropsis oceanica)
AACAGGCGGGGCAAACGGTAGAAGAGATGGAAGCATCCTCTCCTCACCCC
CAGCCTCTTTCCCCCTCCGTGCAACCATCATGGCGACTGGGGTCAGACAC
AGCAGCAGCGCGACCTCTCCCCCACCCTCCTGCCTTCGATGTGGCACAGT
CACTGGCTCTCACAGTCACCAGCAGTAGCGGCACGAGCCAAGGCAAAAAG
AGGAAACTTCCCTCCACCAAGGCAAGTGCTTACCGCCCCGCTGCCACCAC
AACCAACGCGGATGCAGCAAGACCGCACATCCCCACATCAGCACCACAAC
TCAATCAAGACGCAGCAGGGGCCAAATCCAAGACACACAAAAGCTCTCGT
AAAAGCAGAGGCGGTAGTGGTGGTGCTGCTGATGGTAAACCCAGCGGGAG
CAGCAGCCTTATAAGCAGCAGCAAGACGAAGAGTTCACACCACCTTGAGA
CAGCCAAGGCTAACATGGCAGGGACTGAGACAGTGGTGCTCATATCGCGT
ACCACTACTCATTCTCCCCTTTCTTCTTCCAGCGATGATGGAGTCGATCC
CAACGCCGCCATGCCCGTGCCAGTGGTAAACGACACACCTCCTCCTCCAC
CTCCTCCTCCACCTCCTGATTCTAGTATTCCCGTCGTTCAGCCTCCTGCA
ACAGGGAAAATCTGCAAGGCAAAGAAGAAGAAAACGGCCATCACTACCAG
TAAGAAATCAAGGCAAGCCATAGCAGCTGCCACTGGTGTCCTGTCTCTTG
CCCCCCCTCCACCTCCTTCCTCTCTTCCACGACCTCCCCAGTCCAGTTCC
TCAACTCCCTACCTAAACCCCCCCAAAAACAATGCAGCAGTTGTGGCAGC
AGCAACACCGATGATGAGCACCACATCGATGACAATAGCACGACAAGATG
TAGTAGAAGGGATGGAAGAAGAAGAAGAGGAAGGAAAAGAAATAGAAAAA
GAAGGAGAAGGAATAGAAGATGACGACCACCATCACCAACGACAACAGCG
GCAGCAGCGACAGCACCAACAATACCAACAACAACCCACCCTAAAACAAT
ATCACTTGCTCAGGCGACCAGACAAATCCTGGATAAGTCGTTCCTTCTCC
TCCGCTACCGCCATCTCCCTCCCCCCTCCTCTTCCTGCTCCCAAGACCCG
CTACCTCTTGCACACCAAGGAAGCCTACGCAATATTTCTTCGCGAATTCC
TACAAAACTGGGGAGGGAAGCCCATCCTCCCTGCCTTCCTTCCCCCCCCT
CATTCAGCCCCTACTTCTTCCTCGAAGCTTATCCGGGCCGGCAAAATCAA
AACCACCCTCCCCTCTCTCCTTCGGCCCCTCACCCACCTCCAGCTCCTCC
TACTCGCCCGGCACGAGTGGTCTACTCTATCCCTCCGTCGTAAGCGCCGC
TACTTCAAATCTCACATCACTGAAGCCCGTGGTGGCATCTACCCCACCCA
CATTCGAAGCAAGGCCGAAGCTGCTGCCTGCACTGCTGCTGCTGTTGCGC
AAAGACAGCGAGAGGATGCCCGGCCAGCAACAATGAAAGAAATGTTTCCT
TTTTTTGGTGGTGTTGGTCGTGGTAGTGGTGGCAGTGGCAGTGATTCTGC
TGCTGACATACCTGCGGGAATTGGAGGTGTGTGGCGAGGTCCACCCCCTA
CTAATTTGGTGGCGTTGGTGATGAGGGAAGAGCGTTGTAATGTTGCGGAG
GCAAGAGAGAGGGTGAGAAAGATGACGGAGAGAGAGAGGAGGAGAAGGAA
GGAGGAGGTGAGGGAGGGAAAGGAGCGCTATGAGAAGGAGGTGGAGGAGT
ATTGTGTTATGTGGCAGTTGCCGGTGGTGGTGGGTGGGGAGGAAGGGAAG
GGAATGGAGGAGGAGAGGGAGCGGGACGAAGAAGCAGCAGTTGAGGAAGA
ACAGAAAGAAGATGATGATGATGAAGAAGGTAATGATGAGGATGAAGGTG
ATGGTGGTGATGATGATGATGACGGTGAAAATGATGATAACGAAGAGAAT
GAGGGTGAGGAAGACGTGCCGTTGTCGTGCTTGTTGAGTGCGGTGAAGGG
AGGTAAAAAGAGAAGATGGACCATCACAGTAAGTAAATAATCTGAAGGCC
ACTAGGGCGAACGTGCGTTGCCAGCACGAAAGTAAAAAAGTATAGCGGTA
GTGAGGAAAGATGCATACTCGTTAATCCATACACGTTGAGAGACGATTCC
TGGCTTAGTGTACACCACCAAAAAAGTGTAAAAAAGTTTAATAAATGTCC
TGAACAGAAGTAAAAC
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Coding sequence (CDS) from alignment at scaffold_13:537399..539664-

>mRNA_5489 ID=mRNA_5489|Name=jgi.p|Nanoce1779_2|592700|organism=Nannochloropsis oceanica|type=CDS|length=2060bp|location=Sequence derived from alignment at scaffold_13:537399..539664- (Nannochloropsis oceanica)
ATGGAAGCATCCTCTCCTCACCCCCAGCCTCTTTCCCCCTCCGTGCAACC
ATCATGGCGACTGGGGTCAGACACAGCAGCAGCGCGACCTCTCCCCCACC
CTCCTGCCTTCGATGTGGCACAGTCACTGGCTCTCACAGTCACCAGCAGT
AGCGGCACGAGCCAAGGCAAAAAGAGGAAACTTCCCTCCACCAAGGCAAG
TGCTTACCGCCCCGCTGCCACCACAACCAACGCGGATGCAGCAAGACCGC
ACATCCCCACATCAGCACCACAACTCAATCAAGACGCAGCAGGGGCCAAA
TCCAAGACACACAAAAGCTCTCGTAAAAGCAGAGGCGGTAGTGGTGGTGC
TGCTGATGGTAAACCCAGCGGGAGCAGCAGCCTTATAAGCAGCAGCAAGA
CGAAGAGTTCACACCACCTTGAGACAGCCAAGGCTAACATGGCAGGGACT
GAGACAGTGGTGCTCATATCGCGTACCACTACTCATTCTCCCCTTTCTTC
TTCCAGCGATGATGGAGTCGATCCCAACGCCGCCATGCCCGTGCCAGTGG
TAAACGACACACCTCCTCCTCCACCTCCTCCTCCACCTCCTGATTCTAGT
ATTCCCGTCGTTCAGCCTCCTGCAACAGGGAAAATCTGCAAGGCAAAGAA
GAAGAAAACGGCCATCACTACCAGTAAGAAATCAAGGCAAGCCATAGCAG
CTGCCACTGGTGTCCTGTCTCTTGCCCCCCCTCCACCTCCTTCCTCTCTT
CCACGACCTCCCCAGTCCAGTTCCTCAACTCCCTACCTAAACCCCCCCAA
AAACAATGCAGCAGTTGTGGCAGCAGCAACACCGATGATGAGCACCACAT
CGATGACAATAGCACGACAAGATGTAGTAGAAGGGATGGAAGAAGAAGAA
GAGGAAGGAAAAGAAATAGAAAAAGAAGGAGAAGGAATAGAAGATGACGA
CCACCATCACCAACGACAACAGCGGCAGCAGCGACAGCACCAACAATACC
AACAACAACCCACCCTAAAACAATATCACTTGCTCAGGCGACCAGACAAA
TCCTGGATAAGTCGTTCCTTCTCCTCCGCTACCGCCATCTCCCTCCCCCC
TCCTCTTCCTGCTCCCAAGACCCGCTACCTCTTGCACACCAAGGAAGCCT
ACGCAATATTTCTTCGCGAATTCCTACAAAACTGGGGAGGGAAGCCCATC
CTCCCTGCCTTCCTTCCCCCCCCTCATTCAGCCCCTACTTCTTCCTCGAA
GCTTATCCGGGCCGGCAAAATCAAAACCACCCTCCCCTCTCTCCTTCGGC
CCCTCACCCACCTCCAGCTCCTCCTACTCGCCCGGCACGAGTGGTCTACT
CTATCCCTCCGTCGTAAGCGCCGCTACTTCAAATCTCACATCACTGAAGC
CCGTGGTGGCATCTACCCCACCCACATTCGAAGCAAGGCCGAAGCTGCTG
CCTGCACTGCTGCTGCTGTTGCGCAAAGACAGCGAGAGGATGCCCGGCCA
GCAACAATGAAAGAAATGTTTCCTTTTTTTGGTGGTGTTGGTCGTGGTAG
TGGTGGCAGTGGCAGTGATTCTGCTGCTGACATACCTGCGGGAATTGGAG
GTGTGTGGCGAGGTCCACCCCCTACTAATTTGGTGGCGTTGGTGATGAGG
GAAGAGCGTTGTAATGTTGCGGAGGCAAGAGAGAGGGTGAGAAAGATGAC
GGAGAGAGAGAGGAGGAGAAGGAAGGAGGAGGTGAGGGAGGGAAAGGAGC
GCTATGAGAAGGAGGTGGAGGAGTATTGTGTTATGTGGCAGTTGCCGGTG
GTGGTGGGTGGGGAGGAAGGGAAGGGAATGGAGGAGGAGAGGGAGCGGGA
CGAAGAAGCAGCAGTTGAGGAAGAACAGAAAGAAGATGATGATGATGAAG
AAGGTAATGATGAGGATGAAGGTGATGGTGGTGATGATGATGATGACGGT
GAAAATGATGATAACGAAGAGAATGAGGGTGAGGAAGACGTGCCGTTGTC
GTGCTTGTTGAGTGCGGTGAAGGGAGGTAAAAAGAGAAGATGGACCATCA
CAGTAAGTAA
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Synonyms
Publications