jgi.p|Nanoce1779_2|529320, mRNA_5488 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|529320
Unique NamemRNA_5488
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length873
Alignment locationscaffold_13:536025..536897 +

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Properties
Property NameValue
TranscriptId529406
TrackFilteredModels2
ProteinId529320
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:536025..536897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529320gene_5488Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529320mRNA_5488-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5488CDS_5488Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5488 ID=mRNA_5488|Name=jgi.p|Nanoce1779_2|529320|organism=Nannochloropsis oceanica|type=mRNA|length=873bp
ATGAAGCCGACCGTGGCCGTCGCCTTGTCCTCGTGCCTCGCCGCGTTCCA
GCAAGACGGGAAATTGATCTCATTGGACGAGATCACCTGGGGGGAGACCA
TTGGGCACGGGGCATTCGCGACCGTCTACCGAGCGAATGTGAGGGGGGAA
GACGTTGCCGTCAAAAAACTCGTGACCCAGAACAACCTGCCCATGACCGA
GAAGAGTGTGCGGGATTTTCTCTCCGAGGTTGGGTTGCTGCGGGTACTGC
ACCACCCGAACATCATTGGCTTTGTTGGAACGTGTGTTGATCCCGTGGCG
GTGCTGACTGAATTTTGCCAGAAAGGTAATCTGTTTATGGTTTTGAATGA
GAAGGGAGCGGGGTATAGGGAGATGGGGTGGGGGAGGAAAATCGCCATTG
CGAGGGGGCTGGCGGCGGGGATGGAGTACTTGCATTCACGGGAGCCGATT
TTGATACACCGTGACCTGAAGAGTCTTAACGTATTGTTGAATCGCGCGTG
GGAGGTGAAGCTGTCGGATTTCGGCCTCTCGCGATGGAAGCCGAATTCCC
TCACGGATATCATGACAATGCAATGCGGGACGTACCACTGGATGGCGCCC
GAGGTGATCAACTCGACCCAATACACCGAAAAAGCCGATGTCTATTCATT
CGGCATCATCCTGTGGGAGATTGCCGCCAGGGCGATTCCCTACAATGGTA
TGCAGCCTGTTCAGGTGGTTGCCGCCGTGATTAACCGGAGGGAGAGACCG
CCGATGCCGGCTGACGTGCCCCCGATGTATGCGACGTTGGTGAGGGCGTG
TTGGGGACAGGATCCCGAGGAACGGCCGGATTTTGGGGAGATCGTGAAGT
GGCTGAGTAAGATAGAGGGTTAG
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protein sequence of jgi.p|Nanoce1779_2|529320

>mRNA_5488-protein ID=mRNA_5488-protein|Name=jgi.p|Nanoce1779_2|529320|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MKPTVAVALSSCLAAFQQDGKLISLDEITWGETIGHGAFATVYRANVRGE
DVAVKKLVTQNNLPMTEKSVRDFLSEVGLLRVLHHPNIIGFVGTCVDPVA
VLTEFCQKGNLFMVLNEKGAGYREMGWGRKIAIARGLAAGMEYLHSREPI
LIHRDLKSLNVLLNRAWEVKLSDFGLSRWKPNSLTDIMTMQCGTYHWMAP
EVINSTQYTEKADVYSFGIILWEIAARAIPYNGMQPVQVVAAVINRRERP
PMPADVPPMYATLVRACWGQDPEERPDFGEIVKWLSKIEG*
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mRNA from alignment at scaffold_13:536025..536897+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5488 ID=mRNA_5488|Name=jgi.p|Nanoce1779_2|529320|organism=Nannochloropsis oceanica|type=mRNA|length=873bp|location=Sequence derived from alignment at scaffold_13:536025..536897+ (Nannochloropsis oceanica)
ATGAAGCCGACCGTGGCCGTCGCCTTGTCCTCGTGCCTCGCCGCGTTCCA
GCAAGACGGGAAATTGATCTCATTGGACGAGATCACCTGGGGGGAGACCA
TTGGGCACGGGGCATTCGCGACCGTCTACCGAGCGAATGTGAGGGGGGAA
GACGTTGCCGTCAAAAAACTCGTGACCCAGAACAACCTGCCCATGACCGA
GAAGAGTGTGCGGGATTTTCTCTCCGAGGTTGGGTTGCTGCGGGTACTGC
ACCACCCGAACATCATTGGCTTTGTTGGAACGTGTGTTGATCCCGTGGCG
GTGCTGACTGAATTTTGCCAGAAAGGTAATCTGTTTATGGTTTTGAATGA
GAAGGGAGCGGGGTATAGGGAGATGGGGTGGGGGAGGAAAATCGCCATTG
CGAGGGGGCTGGCGGCGGGGATGGAGTACTTGCATTCACGGGAGCCGATT
TTGATACACCGTGACCTGAAGAGTCTTAACGTATTGTTGAATCGCGCGTG
GGAGGTGAAGCTGTCGGATTTCGGCCTCTCGCGATGGAAGCCGAATTCCC
TCACGGATATCATGACAATGCAATGCGGGACGTACCACTGGATGGCGCCC
GAGGTGATCAACTCGACCCAATACACCGAAAAAGCCGATGTCTATTCATT
CGGCATCATCCTGTGGGAGATTGCCGCCAGGGCGATTCCCTACAATGGTA
TGCAGCCTGTTCAGGTGGTTGCCGCCGTGATTAACCGGAGGGAGAGACCG
CCGATGCCGGCTGACGTGCCCCCGATGTATGCGACGTTGGTGAGGGCGTG
TTGGGGACAGGATCCCGAGGAACGGCCGGATTTTGGGGAGATCGTGAAGT
GGCTGAGTAAGATAGAGGGTTAG
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Coding sequence (CDS) from alignment at scaffold_13:536025..536897+

>mRNA_5488 ID=mRNA_5488|Name=jgi.p|Nanoce1779_2|529320|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at scaffold_13:536025..536897+ (Nannochloropsis oceanica)
ATGAAGCCGACCGTGGCCGTCGCCTTGTCCTCGTGCCTCGCCGCGTTCCA
GCAAGACGGGAAATTGATCTCATTGGACGAGATCACCTGGGGGGAGACCA
TTGGGCACGGGGCATTCGCGACCGTCTACCGAGCGAATGTGAGGGGGGAA
GACGTTGCCGTCAAAAAACTCGTGACCCAGAACAACCTGCCCATGACCGA
GAAGAGTGTGCGGGATTTTCTCTCCGAGGTTGGGTTGCTGCGGGTACTGC
ACCACCCGAACATCATTGGCTTTGTTGGAACGTGTGTTGATCCCGTGGCG
GTGCTGACTGAATTTTGCCAGAAAGGTAATCTGTTTATGGTTTTGAATGA
GAAGGGAGCGGGGTATAGGGAGATGGGGTGGGGGAGGAAAATCGCCATTG
CGAGGGGGCTGGCGGCGGGGATGGAGTACTTGCATTCACGGGAGCCGATT
TTGATACACCGTGACCTGAAGAGTCTTAACGTATTGTTGAATCGCGCGTG
GGAGGTGAAGCTGTCGGATTTCGGCCTCTCGCGATGGAAGCCGAATTCCC
TCACGGATATCATGACAATGCAATGCGGGACGTACCACTGGATGGCGCCC
GAGGTGATCAACTCGACCCAATACACCGAAAAAGCCGATGTCTATTCATT
CGGCATCATCCTGTGGGAGATTGCCGCCAGGGCGATTCCCTACAATGGTA
TGCAGCCTGTTCAGGTGGTTGCCGCCGTGATTAACCGGAGGGAGAGACCG
CCGATGCCGGCTGACGTGCCCCCGATGTATGCGACGTTGGTGAGGGCGTG
TTGGGGACAGGATCCCGAGGAACGGCCGGATTTTGGGGAGATCGTGAAGT
GGCTGAGTAAGATAGAGGGTTAG
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Synonyms
Publications