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Properties
| Property Name | Value |
|---|
| TranscriptId | 592770 |
| Track | FilteredModels2 |
| ProteinId | 592684 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:524687..526245 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5484 ID=mRNA_5484|Name=jgi.p|Nanoce1779_2|592684|organism=Nannochloropsis oceanica|type=mRNA|length=1559bp
GCTACACCGACAGCCGCGCCTACAGCCACACCCACCGCTACACCGACAGC
TGCGCCTACAGCCACACCCACTGCTACCCCGACCGCTACCCCAACGGCTG
CGCCTACTGACACGCCAGGACCAGGATCCCAGTGGACTAGTATTTTCGTA
AATACGGCCAACAATGGCGCAATCGCCTACAACAATGGAACTTTCGTGGC
AGGCGGATCCGGCGGTAACCCCATTACATACAGCACAAACAATGGGGTCA
ATTGGCAAGCTGCCACGAGCACCCCGTCAGGCATGACCGTTACAGGCATC
GCATATGGCAATTCACTTTGGGTAGCTGTTGGGCTTTTGGAGAAACAAGT
GGCAACCAGCTCTTCTGATCTAAACACGTGGACCGAGCAAACCGGTCTTT
CTGGAAATAGGTTTTGGAGGGGGCTTGCTTATGGAAACGGTCTCTTCGTC
GCGGTTGCAAATAATGACGTCATGACGAGTCCAGACGGTACGACATGGAC
GAGTCGAACGCCAGCCAGTAGCAATAGCTGGTGGGATGTCACATTTGGCA
ATAATCTCTTCGTCGCCTCAGCTCTAAGCGGCACAGGTAATCGTGTGATG
ACAAGCCCTGACGGCACTACATGGACCTCGAGGACAAGCGCCGCTGATAA
TGAGTGGCGAGGCGTCACTTACGCTGACAACTTGTACGTGGCTGTCGCAA
GTACGGGCACGGGCGATCGTGTGATGACAAGCTCTGATGGTATAACGTGG
ACCTTGAGGACAGGCGCCGCTAATAATGACTGGCAAAGTGTGACCTGGGG
CAATGGCACCTTCGTGGCAGTGGCCTCCACCGGAGCTGTAGGGAACCGTA
TTGATAGCCGGATCATGACCAGCCCGGACGGCGTGACTTGGACAGGCCAG
ATTTCTCCTGATGCTACCTGGCAGGCCGTCACTTACGGCGGGGGCTTGTT
TGTAGCAGCTGCAAACAGTGGATCGTGGAAACTCGCGTCAAGCCCCTAGT
TGGAGACATACCCCCATGGCAAGCTTAATTGTTCTGTCTGTATGGGGATG
GACTTTCTGGAGGCTCCATCGATATCTACACACACGCCATGAGGCTTATC
ATGCACATGAATTATACTATAATAGGTGCTTCCCGATCGTACGCGAACGA
AGTCACCAATCCATTTTCTACTACCTCATTAGTCTGCTACATACGTGGGT
TGGTATCACACTTCATGTGATTATAAGTCAACCAAAGCGACCTCCACGAA
GGAAAGTCAGAGGCAAAGGTTACCTAGATATGTTTCATGCAGCAAAGGGA
CATTACCCTACGTTCTGAGTGAACAGCTTGACAACGTCGATCAACCATAA
TCCTTGGCCTTCAACATCTCTCATTGGTACGAGTAAGAGAAACGACGAGA
GCTTGCGAAAACGAAGCGAATAGTACGATATTAACCTATTCATGACAAGG
TTCTCCATTGATACATGCACTATCGTCATTTTACTACTTCGTGTATGGGC
TGGAGTTGGCGATGTGAGAAATAATAATTTCCTTCTAATATGCCCTTCCT
CTCCTGCCC back to topprotein sequence of jgi.p|Nanoce1779_2|592684 >mRNA_5484-protein ID=mRNA_5484-protein|Name=jgi.p|Nanoce1779_2|592684|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MTVTGIAYGNSLWVAVGLLEKQVATSSSDLNTWTEQTGLSGNRFWRGLAY
GNGLFVAVANNDVMTSPDGTTWTSRTPASSNSWWDVTFGNNLFVASALSG
TGNRVMTSPDGTTWTSRTSAADNEWRGVTYADNLYVAVASTGTGDRVMTS
SDGITWTLRTGAANNDWQSVTWGNGTFVAVASTGAVGNRIDSRIMTSPDG
VTWTGQISPDATWQAVTYGGGLFVAAANSGSWKLASSP* back to topmRNA from alignment at scaffold_13:524687..526245- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5484 ID=mRNA_5484|Name=jgi.p|Nanoce1779_2|592684|organism=Nannochloropsis oceanica|type=mRNA|length=1559bp|location=Sequence derived from alignment at scaffold_13:524687..526245- (Nannochloropsis oceanica)
GCTACACCGACAGCCGCGCCTACAGCCACACCCACCGCTACACCGACAGC
TGCGCCTACAGCCACACCCACTGCTACCCCGACCGCTACCCCAACGGCTG
CGCCTACTGACACGCCAGGACCAGGATCCCAGTGGACTAGTATTTTCGTA
AATACGGCCAACAATGGCGCAATCGCCTACAACAATGGAACTTTCGTGGC
AGGCGGATCCGGCGGTAACCCCATTACATACAGCACAAACAATGGGGTCA
ATTGGCAAGCTGCCACGAGCACCCCGTCAGGCATGACCGTTACAGGCATC
GCATATGGCAATTCACTTTGGGTAGCTGTTGGGCTTTTGGAGAAACAAGT
GGCAACCAGCTCTTCTGATCTAAACACGTGGACCGAGCAAACCGGTCTTT
CTGGAAATAGGTTTTGGAGGGGGCTTGCTTATGGAAACGGTCTCTTCGTC
GCGGTTGCAAATAATGACGTCATGACGAGTCCAGACGGTACGACATGGAC
GAGTCGAACGCCAGCCAGTAGCAATAGCTGGTGGGATGTCACATTTGGCA
ATAATCTCTTCGTCGCCTCAGCTCTAAGCGGCACAGGTAATCGTGTGATG
ACAAGCCCTGACGGCACTACATGGACCTCGAGGACAAGCGCCGCTGATAA
TGAGTGGCGAGGCGTCACTTACGCTGACAACTTGTACGTGGCTGTCGCAA
GTACGGGCACGGGCGATCGTGTGATGACAAGCTCTGATGGTATAACGTGG
ACCTTGAGGACAGGCGCCGCTAATAATGACTGGCAAAGTGTGACCTGGGG
CAATGGCACCTTCGTGGCAGTGGCCTCCACCGGAGCTGTAGGGAACCGTA
TTGATAGCCGGATCATGACCAGCCCGGACGGCGTGACTTGGACAGGCCAG
ATTTCTCCTGATGCTACCTGGCAGGCCGTCACTTACGGCGGGGGCTTGTT
TGTAGCAGCTGCAAACAGTGGATCGTGGAAACTCGCGTCAAGCCCCTAGT
TGGAGACATACCCCCATGGCAAGCTTAATTGTTCTGTCTGTATGGGGATG
GACTTTCTGGAGGCTCCATCGATATCTACACACACGCCATGAGGCTTATC
ATGCACATGAATTATACTATAATAGGTGCTTCCCGATCGTACGCGAACGA
AGTCACCAATCCATTTTCTACTACCTCATTAGTCTGCTACATACGTGGGT
TGGTATCACACTTCATGTGATTATAAGTCAACCAAAGCGACCTCCACGAA
GGAAAGTCAGAGGCAAAGGTTACCTAGATATGTTTCATGCAGCAAAGGGA
CATTACCCTACGTTCTGAGTGAACAGCTTGACAACGTCGATCAACCATAA
TCCTTGGCCTTCAACATCTCTCATTGGTACGAGTAAGAGAAACGACGAGA
GCTTGCGAAAACGAAGCGAATAGTACGATATTAACCTATTCATGACAAGG
TTCTCCATTGATACATGCACTATCGTCATTTTACTACTTCGTGTATGGGC
TGGAGTTGGCGATGTGAGAAATAATAATTTCCTTCTAATATGCCCTTCCT
CTCCTGCCC back to topCoding sequence (CDS) from alignment at scaffold_13:524687..526245- >mRNA_5484 ID=mRNA_5484|Name=jgi.p|Nanoce1779_2|592684|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at scaffold_13:524687..526245- (Nannochloropsis oceanica)
ATGACCGTTACAGGCATCGCATATGGCAATTCACTTTGGGTAGCTGTTGG
GCTTTTGGAGAAACAAGTGGCAACCAGCTCTTCTGATCTAAACACGTGGA
CCGAGCAAACCGGTCTTTCTGGAAATAGGTTTTGGAGGGGGCTTGCTTAT
GGAAACGGTCTCTTCGTCGCGGTTGCAAATAATGACGTCATGACGAGTCC
AGACGGTACGACATGGACGAGTCGAACGCCAGCCAGTAGCAATAGCTGGT
GGGATGTCACATTTGGCAATAATCTCTTCGTCGCCTCAGCTCTAAGCGGC
ACAGGTAATCGTGTGATGACAAGCCCTGACGGCACTACATGGACCTCGAG
GACAAGCGCCGCTGATAATGAGTGGCGAGGCGTCACTTACGCTGACAACT
TGTACGTGGCTGTCGCAAGTACGGGCACGGGCGATCGTGTGATGACAAGC
TCTGATGGTATAACGTGGACCTTGAGGACAGGCGCCGCTAATAATGACTG
GCAAAGTGTGACCTGGGGCAATGGCACCTTCGTGGCAGTGGCCTCCACCG
GAGCTGTAGGGAACCGTATTGATAGCCGGATCATGACCAGCCCGGACGGC
GTGACTTGGACAGGCCAGATTTCTCCTGATGCTACCTGGCAGGCCGTCAC
TTACGGCGGGGGCTTGTTTGTAGCAGCTGCAAACAGTGGATCGTGGAAAC
TCGCGTCAAGCCCCTAG back to top
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