jgi.p|Nanoce1779_2|592674, mRNA_5483 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592674
Unique NamemRNA_5483
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1234
Alignment locationscaffold_13:521107..522884 -

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Properties
Property NameValue
TranscriptId592760
TrackFilteredModels2
ProteinId592674
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:521107..522884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592674gene_5483Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592674mRNA_5483-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5483CDS_5483Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5483 ID=mRNA_5483|Name=jgi.p|Nanoce1779_2|592674|organism=Nannochloropsis oceanica|type=mRNA|length=1234bp
ACAGGTGCACATACCCTGCCAAGGAACAAATCATGCGTACCGCCGTCCTT
TTCGCGACCATCCTGCTCCAGGCCGCCGCTCCTACCATGGCCAGCTTCTC
ATTCGGCCAGAATTCTCTGGAGTGCAAGACGGTTGTCCCTCAGAATCCGG
TGGATCTGCAGAAGTACGCCAGTGGCCGTTGGTACATCCATCAACAGATG
GCGACGCAGGCGGGGAACCCGAATGGGCAGTGGAATTACTGTGTCTTCGC
CGAATACACAATAAAGACTTCGAACAACCTGGCCGTGCACAACTACGCGA
ACGAGGGCGGAGTTAACAACATCATCCACGACGCCCAGCTCTGCGCCACA
ATTAGAGACCCCCAAAACGACCCTGGTCGCTTGGCAGTGGGACCGTGCTT
CCTTGAATTCCTTGACCGGTTCGCTTTTGGGCCATATTTCATAGTGGCGT
ATGATGAGGCGGAAGGCTATGCTTTGGTTTCAGGGGGAAGTCCTACCATT
CCAACTAAGGATGGCCTTTGCACAACTCAGCGGGGTTTCAATAATGCTGG
ACTGTGGGTGTTCTCTCGATCTAATGTGCGGGATGAAACATTGATTCAGA
AGGTCCGGGAAATTGCCGTGTCTAAGGGTTTTGACGTGGATGTGCTCGAG
GATGTGCAGCATGTGGGTTGCAATTATACGTCATCATCCGGGCCCGCATT
CCTGCGAGCTTAAGCCGGAGGATGGTATGGGGATGAAGGTGAGAGCTCGC
TGGAGGGAGAAAGATGAGAAATAATGCGGAGAGAATCTGATAGCGACAGT
GGCATTTAGAGTCCGAAAAGGCTTGTACACGACATCAAAGCAGAACAACA
ACAATTTATAAAGAGGAACGCATGAGGGGAGGGGAAACCGAGGCGGTAGC
TTATGCAAACGGAAGTTACCGACAGTCTGGGACATTGGGTAGTTGCTGGA
CACGACATTGCAGAAAGAAAAAAAGAGAAGTCGACGGCACTTTAAATAAA
TAGAAGGCAATCGTGGATCTGCCCAGAATGCTTTTTCGAGTGGGATCTCC
CCTCGCCCAGGGACCCCCCGCTCCGGGCCTGTTACTGCATTCTGTGATGC
TCCCCGCCTCCGTGTCGCCAACACTCTCGCTGATAGGTTTAAAATTCGCT
GGCGTCTATTAGCCGTCACACTTAAACCTTACTCGCAATAATACGCAAGC
GCACCAGCGCATGGCCAAAAGTTTACTGCGGAGG
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protein sequence of jgi.p|Nanoce1779_2|592674

>mRNA_5483-protein ID=mRNA_5483-protein|Name=jgi.p|Nanoce1779_2|592674|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MRTAVLFATILLQAAAPTMASFSFGQNSLECKTVVPQNPVDLQKYASGRW
YIHQQMATQAGNPNGQWNYCVFAEYTIKTSNNLAVHNYANEGGVNNIIHD
AQLCATIRDPQNDPGRLAVGPCFLEFLDRFAFGPYFIVAYDEAEGYALVS
GGSPTIPTKDGLCTTQRGFNNAGLWVFSRSNVRDETLIQKVREIAVSKGF
DVDVLEDVQHVGCNYTSSSGPAFLRA*
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mRNA from alignment at scaffold_13:521107..522884-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5483 ID=mRNA_5483|Name=jgi.p|Nanoce1779_2|592674|organism=Nannochloropsis oceanica|type=mRNA|length=1778bp|location=Sequence derived from alignment at scaffold_13:521107..522884- (Nannochloropsis oceanica)
ACAGGTGCACATACCCTGCCAAGGAACAAATCATGCGTACCGCCGTCCTT
TTCGCGACCATCCTGCTCCAGGCCGCCGCTCCTACCATGGCCAGCTTCTC
ATTCGGCCAGGTAATTACTGCTAGTATCTGTGTTGGTATGGGCGAGCGCT
TTTATCGTTCGAATGCTGCTGAAGTTCTGGTCCTAACCTGTGGCAGGGAT
GGCAGGGACATCCATGTGTGGAAAGAAAGACAAGCTTTCCTGGGACCGAG
CACAGTTCAGTGTTAGGTGTCCGAGGGTCTATAAATGACTTCAACTTGAA
CAACAGACCTCCTGTGACATTCCTCTTATACCCTCTGCTATCATAATCAC
GCATTTCCTAACACCACTTGTCCTTTTATCTCCGTCCCCCCCTTCTCGCC
TCCTCAGAATTCTCTGGAGTGCAAGACGGTTGTCCCTCAGAATCCGGTGG
ATCTGCAGAAGTACGCCAGTGGCCGTTGGTACATCCATCAACAGATGGCG
ACGCAGGCGGGGAACCCGAATGGGCAGTGGAATTACTGGTGGGTTTGACT
GGGGAGGATGGGATGGCGTTCTGAGTGTAACCTCTACCAGCTTACACTTA
CTTTCTTGCACTGTGTCTAAAGCCAGCACAGCCAGCAAATCGTTGTTAGG
CATCAAGTAAACACGTCCTTGTAGTCGCAACCTCGAAGTCTCGTCGTCGC
AGCATGCCATTCTTTTATTTTATATTATTCCTCCTTTCACCGTCGCCCCT
CCCCATTCACCCTCCTGTCCGTCCTCTCTCCCCAGTGTCTTCGCCGAATA
CACAATAAAGACTTCGAACAACCTGGCCGTGCACAACTACGCGAACGAGG
GCGGAGTTAACAACATCATCCACGACGCCCAGCTCTGCGCCACAATTAGA
GACCCCCAAAACGACCCTGGTCGCTTGGCAGTGGGACCGTGCTTCCTTGA
ATTCCTTGACCGGTTCGCTTTTGGGCCATATTTCATAGTGGCGTATGATG
AGGCGGAAGGCTATGCTTTGGTTTCAGGGGGAAGTCCTACCATTCCAACT
AAGGATGGCCTTTGCACAACTCAGCGGGGTTTCAATAATGCTGGACTGTG
GGTGTTCTCTCGATCTAATGTGCGGGATGAAACATTGATTCAGAAGGTCC
GGGAAATTGCCGTGTCTAAGGGTTTTGACGTGGATGTGCTCGAGGATGTG
CAGCATGTGGGTTGCAATTATACGTCATCATCCGGGCCCGCATTCCTGCG
AGCTTAAGCCGGAGGATGGTATGGGGATGAAGGTGAGAGCTCGCTGGAGG
GAGAAAGATGAGAAATAATGCGGAGAGAATCTGATAGCGACAGTGGCATT
TAGAGTCCGAAAAGGCTTGTACACGACATCAAAGCAGAACAACAACAATT
TATAAAGAGGAACGCATGAGGGGAGGGGAAACCGAGGCGGTAGCTTATGC
AAACGGAAGTTACCGACAGTCTGGGACATTGGGTAGTTGCTGGACACGAC
ATTGCAGAAAGAAAAAAAGAGAAGTCGACGGCACTTTAAATAAATAGAAG
GCAATCGTGGATCTGCCCAGAATGCTTTTTCGAGTGGGATCTCCCCTCGC
CCAGGGACCCCCCGCTCCGGGCCTGTTACTGCATTCTGTGATGCTCCCCG
CCTCCGTGTCGCCAACACTCTCGCTGATAGGTTTAAAATTCGCTGGCGTC
TATTAGCCGTCACACTTAAACCTTACTCGCAATAATACGCAAGCGCACCA
GCGCATGGCCAAAAGTTTACTGCGGAGG
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Coding sequence (CDS) from alignment at scaffold_13:521107..522884-

>mRNA_5483 ID=mRNA_5483|Name=jgi.p|Nanoce1779_2|592674|organism=Nannochloropsis oceanica|type=CDS|length=2043bp|location=Sequence derived from alignment at scaffold_13:521107..522884- (Nannochloropsis oceanica)
TGTCTTCGCCGAATACACAATAAAGACTTCGAACAACCTGGCCGTGCACA
ACTACGCGAACGAGGGCGGAGTTAACAACATCATCCACGACGCCCAGCTC
TGCGCCACAATTAGAGACCCCCAAAACGACCCTGGTCGCTTGGCAGTGGG
ACCGTGCTTCCTTGAATTCCTTGACCGGTTCGCTTTTGGGCCATATTTCA
TAGTGGCGTATGATGAGGCGGAAGGCTATGCTTTGGTTTCAGGGGGAAGT
CCTACCATTCCAACTAAGGATGGCCTTTGCACAACTCAGCGGGGTTTCAA
TAATGCTGGACTGTGGGTGTTCTCTCGATCTAATGTGCGGGATGAAACAT
TGATTCAGAAGGTCCGGGAAATTGCCGTGTCTAAGGGTTTTGACGTGGAT
GTGCTCGAGGATGTGCAGCATGTGGGTTGCAATTATACGTCATCATCCGG
GCCCGCATTCCTGCGAGCTTAAAATTCTCTGGAGTGCAAGACGGTTGTCC
CTCAGAATCCGGTGGATCTGCAGAAGTACGCCAGTGGCCGTTGGTACATC
CATCAACAGATGGCGACGCAGGCGGGGAACCCGAATGGGCAGTGGAATTA
CTGATGCGTACCGCCGTCCTTTTCGCGACCATCCTGCTCCAGGCCGCCGC
TCCTACCATGGCCAGCTTCTCATTCGGCCAGTGTCTTCGCCGAATACACA
ATAAAGACTTCGAACAACCTGGCCGTGCACAACTACGCGAACGAGGGCGG
AGTTAACAACATCATCCACGACGCCCAGCTCTGCGCCACAATTAGAGACC
CCCAAAACGACCCTGGTCGCTTGGCAGTGGGACCGTGCTTCCTTGAATTC
CTTGACCGGTTCGCTTTTGGGCCATATTTCATAGTGGCGTATGATGAGGC
GGAAGGCTATGCTTTGGTTTCAGGGGGAAGTCCTACCATTCCAACTAAGG
ATGGCCTTTGCACAACTCAGCGGGGTTTCAATAATGCTGGACTGTGGGTG
TTCTCTCGATCTAATGTGCGGGATGAAACATTGATTCAGAAGGTCCGGGA
AATTGCCGTGTCTAAGGGTTTTGACGTGGATGTGCTCGAGGATGTGCAGC
ATGTGGGTTGCAATTATACGTCATCATCCGGGCCCGCATTCCTGCGAGCT
TAAAATTCTCTGGAGTGCAAGACGGTTGTCCCTCAGAATCCGGTGGATCT
GCAGAAGTACGCCAGTGGCCGTTGGTACATCCATCAACAGATGGCGACGC
AGGCGGGGAACCCGAATGGGCAGTGGAATTACTGATGCGTACCGCCGTCC
TTTTCGCGACCATCCTGCTCCAGGCCGCCGCTCCTACCATGGCCAGCTTC
TCATTCGGCCAGTGTCTTCGCCGAATACACAATAAAGACTTCGAACAACC
TGGCCGTGCACAACTACGCGAACGAGGGCGGAGTTAACAACATCATCCAC
GACGCCCAGCTCTGCGCCACAATTAGAGACCCCCAAAACGACCCTGGTCG
CTTGGCAGTGGGACCGTGCTTCCTTGAATTCCTTGACCGGTTCGCTTTTG
GGCCATATTTCATAGTGGCGTATGATGAGGCGGAAGGCTATGCTTTGGTT
TCAGGGGGAAGTCCTACCATTCCAACTAAGGATGGCCTTTGCACAACTCA
GCGGGGTTTCAATAATGCTGGACTGTGGGTGTTCTCTCGATCTAATGTGC
GGGATGAAACATTGATTCAGAAGGTCCGGGAAATTGCCGTGTCTAAGGGT
TTTGACGTGGATGTGCTCGAGGATGTGCAGCATGTGGGTTGCAATTATAC
GTCATCATCCGGGCCCGCATTCCTGCGAGCTTAAAATTCTCTGGAGTGCA
AGACGGTTGTCCCTCAGAATCCGGTGGATCTGCAGAAGTACGCCAGTGGC
CGTTGGTACATCCATCAACAGATGGCGACGCAGGCGGGGAACCCGAATGG
GCAGTGGAATTACTGATGCGTACCGCCGTCCTTTTCGCGACCATCCTGCT
CCAGGCCGCCGCTCCTACCATGGCCAGCTTCTCATTCGGCCAG
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Synonyms
Publications