jgi.p|Nanoce1779_2|592662, mRNA_5481 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592662
Unique NamemRNA_5481
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length923
Alignment locationscaffold_13:518109..519031 +

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Properties
Property NameValue
TranscriptId592748
TrackFilteredModels2
ProteinId592662
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:518109..519031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592662gene_5481Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592662mRNA_5481-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5481CDS_5481Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5481 ID=mRNA_5481|Name=jgi.p|Nanoce1779_2|592662|organism=Nannochloropsis oceanica|type=mRNA|length=923bp
CAGGTCAAATATCTAGCGGCGTTCGCCCAGTCTGCACTTCAACTTCACCA
GCTTATTTACCCTTAGCCATGCCCGCCTGTACACCCGCCACGGCACGGTT
GGCCACGCCGATGCTCTTCACCCTCTTTCTCGCTTTCGCCCTCTTTGCCA
CGACGACGCAGGCCTTCTTCCCCTCGTCCCCCTGCTTCCAACTCCGCAGC
TGCAGGAGTTGCCGAGTCTCCATGTCCGCCACCACCGTTCCCCCCCCTGC
TGCCCCCGCCGCCGCCGCCGCCAAGCCTCGTCCTCGTCGGGAGATTCTCA
TCGAGCAAATGATTGAAAGCAATGGTGGATATATGGCCCGCGTGAAAGTG
CAGAACTTCAAGGACGCGACCGAGCACACGGTCATTACCAGCAAGGAGCT
ATACCTGGAGACAGTAACCTTGGCAGGGAAGACGGTCGAGGACGTGCCGG
TGGAGGATTATTTCAAGGCTGTGTTTAAGTATATTCTCAGCAAAGGCATG
GCTCTGACTAGGACAGAGGGCATGATCGACGCAGGCATTTTCCCGATCAA
CTACTTCAGTGTTTCGCAGTTGGCCATTTTCATGGATGATACCGTTGAGG
GGGTTGCGGCGGAGCTTCGGTAGGTATGAGCAGAACGGAGAAAAGAGAGC
GAAGGATGAAGAGGCTTAGGCTTGTGTGTCAGAAAGGAAGACAGATGGGT
AGGAGGGGTAGAAAAAAAGAAGAGAAGTGGGATAAGGCATTTTTGTAAGG
CGCCGAAAAGGGGAGCAGCAGGGACGGGAATGGCTAAAGAGGCCATGTTT
ATCTTCCCAAGAAGTCGGAGGGAGGGCATAGGGGGGGAGGATCACAAGCA
ATAGGTAACACTATTTGCCATTCAAACCAGCCTAGTGCAATAGAGAAAAG
AAAAACAAGAGGAAGAATCGATG
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protein sequence of jgi.p|Nanoce1779_2|592662

>mRNA_5481-protein ID=mRNA_5481-protein|Name=jgi.p|Nanoce1779_2|592662|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MPACTPATARLATPMLFTLFLAFALFATTTQAFFPSSPCFQLRSCRSCRV
SMSATTVPPPAAPAAAAAKPRPRREILIEQMIESNGGYMARVKVQNFKDA
TEHTVITSKELYLETVTLAGKTVEDVPVEDYFKAVFKYILSKGMALTRTE
GMIDAGIFPINYFSVSQLAIFMDDTVEGVAAELR*
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mRNA from alignment at scaffold_13:518109..519031+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5481 ID=mRNA_5481|Name=jgi.p|Nanoce1779_2|592662|organism=Nannochloropsis oceanica|type=mRNA|length=923bp|location=Sequence derived from alignment at scaffold_13:518109..519031+ (Nannochloropsis oceanica)
CAGGTCAAATATCTAGCGGCGTTCGCCCAGTCTGCACTTCAACTTCACCA
GCTTATTTACCCTTAGCCATGCCCGCCTGTACACCCGCCACGGCACGGTT
GGCCACGCCGATGCTCTTCACCCTCTTTCTCGCTTTCGCCCTCTTTGCCA
CGACGACGCAGGCCTTCTTCCCCTCGTCCCCCTGCTTCCAACTCCGCAGC
TGCAGGAGTTGCCGAGTCTCCATGTCCGCCACCACCGTTCCCCCCCCTGC
TGCCCCCGCCGCCGCCGCCGCCAAGCCTCGTCCTCGTCGGGAGATTCTCA
TCGAGCAAATGATTGAAAGCAATGGTGGATATATGGCCCGCGTGAAAGTG
CAGAACTTCAAGGACGCGACCGAGCACACGGTCATTACCAGCAAGGAGCT
ATACCTGGAGACAGTAACCTTGGCAGGGAAGACGGTCGAGGACGTGCCGG
TGGAGGATTATTTCAAGGCTGTGTTTAAGTATATTCTCAGCAAAGGCATG
GCTCTGACTAGGACAGAGGGCATGATCGACGCAGGCATTTTCCCGATCAA
CTACTTCAGTGTTTCGCAGTTGGCCATTTTCATGGATGATACCGTTGAGG
GGGTTGCGGCGGAGCTTCGGTAGGTATGAGCAGAACGGAGAAAAGAGAGC
GAAGGATGAAGAGGCTTAGGCTTGTGTGTCAGAAAGGAAGACAGATGGGT
AGGAGGGGTAGAAAAAAAGAAGAGAAGTGGGATAAGGCATTTTTGTAAGG
CGCCGAAAAGGGGAGCAGCAGGGACGGGAATGGCTAAAGAGGCCATGTTT
ATCTTCCCAAGAAGTCGGAGGGAGGGCATAGGGGGGGAGGATCACAAGCA
ATAGGTAACACTATTTGCCATTCAAACCAGCCTAGTGCAATAGAGAAAAG
AAAAACAAGAGGAAGAATCGATG
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Coding sequence (CDS) from alignment at scaffold_13:518109..519031+

>mRNA_5481 ID=mRNA_5481|Name=jgi.p|Nanoce1779_2|592662|organism=Nannochloropsis oceanica|type=CDS|length=555bp|location=Sequence derived from alignment at scaffold_13:518109..519031+ (Nannochloropsis oceanica)
ATGCCCGCCTGTACACCCGCCACGGCACGGTTGGCCACGCCGATGCTCTT
CACCCTCTTTCTCGCTTTCGCCCTCTTTGCCACGACGACGCAGGCCTTCT
TCCCCTCGTCCCCCTGCTTCCAACTCCGCAGCTGCAGGAGTTGCCGAGTC
TCCATGTCCGCCACCACCGTTCCCCCCCCTGCTGCCCCCGCCGCCGCCGC
CGCCAAGCCTCGTCCTCGTCGGGAGATTCTCATCGAGCAAATGATTGAAA
GCAATGGTGGATATATGGCCCGCGTGAAAGTGCAGAACTTCAAGGACGCG
ACCGAGCACACGGTCATTACCAGCAAGGAGCTATACCTGGAGACAGTAAC
CTTGGCAGGGAAGACGGTCGAGGACGTGCCGGTGGAGGATTATTTCAAGG
CTGTGTTTAAGTATATTCTCAGCAAAGGCATGGCTCTGACTAGGACAGAG
GGCATGATCGACGCAGGCATTTTCCCGATCAACTACTTCAGTGTTTCGCA
GTTGGCCATTTTCATGGATGATACCGTTGAGGGGGTTGCGGCGGAGCTTC
GGTAG
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Synonyms
Publications