jgi.p|Nanoce1779_2|577659, mRNA_548 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577659
Unique NamemRNA_548
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1440
Alignment locationscaffold_3:1324740..1326179 -

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Properties
Property NameValue
TranscriptId577745
TrackFilteredModels2
ProteinId577659
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1324740..1326179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577659gene_548Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577659mRNA_548-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_548CDS_548Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_548 ID=mRNA_548|Name=jgi.p|Nanoce1779_2|577659|organism=Nannochloropsis oceanica|type=mRNA|length=1440bp
AGCAACAACAGGAGCGACAGCAACAAATACAGCAACAGCGGCGGAAGCGG
AAGATGGAGGCAGGGGAGGAGGAGGAGGAGTTGGGGGAGGAGGATGACGG
GCCATGGGCGCCCGTGAAGGGCGGCCCAGTCCTGACAGAGCTGGAGGCAG
GAACGCTAACGGAAGAACAAAAGCGACACCGGAAGGAGCTGGCGGAGCGG
AAGGCGCTTAAGCACAGGGGGTACGACGAGGAGGAGGATCACGATCGACG
GGACGAACGGAAGGTGGCTCATTTATTGCCGCCGCGGCATGACCGAGATA
CGGTCGCCTCTGAGCCCAGCACGCAATTCCATGGCAAGGGCCAGAAAGAC
TATCAGGGCCGGTCATGGGTGGAGCCACCGGCGGGGCTGCGGGAGGTGGA
GACGGACCACCCTTGTTATTTGCCCAAGCGGTGTACGCACAGGTATGCGG
GGCATGAGAAGGGGGTGCAAGCTATTGAGTTCTCCCCTGGCACCGGCCAC
TTGCTTTTATCCGGATCGCTGGATGGGACATGTAAGATGTGGTCTGTGTA
TGGCGAGCGGCAGCTGCGGAGGACGTACTCGGGGCATGGAGCAGCGGTGC
GATGTATTAATTTCAATGCAGATGGCACGCGCTTCTTGAGCGGGGGCTTC
GATCGGTTTTTGCGGTTGTGGGACACGGAGACGGGGCAGTGCATCTCGAC
GGTGACCAACCGGAAAGTGCCGTATGCAGCAAAGTTCTACCCGCCCAACG
ATAAGTTGTTTGTTTTTGCGGCGTCGGATAACAGGCTTTACACGTTTGAT
TGGACGTCGGGGGAGATGGTGCAGGAATATAACCACCACTTGTCAGCCGT
GAACACCGTCACTTTCTACGACAATAACACGAAGTTTGCCTCCACTTCGG
ATGATAAGAAGATGCTGTTGTGGGAGTGGGATATTCCGGTACCGATCAAG
TACATCGCTGAGCCCGGTATGCACTCAATGCCTGCCGTCACCCCCTCCCC
AGATGGAGGCTTTGTCGCCTGTCAGTCTCTAGATAACACCATTAAGATCT
TTTCTTGCCGCGATCGCTTCAAGCTTTTGCACAAGAAGGTGTTCAAGGGG
CATACTATCGCAGGTTTTGCGTGTCAGCCGGCATTTTCACCGAACAATCG
GTACCTGGCTTCAGGGGATGGGGAAGGGAAGTTGCATTTTTGGGACTTTA
AGAACACGCGGTCTTTGGCAAAGTATCGGGCGCATGACAACGGCCCTTGC
ATTGGCTTGACCTGGCACCCTGTGGAATCATCCATGGTCGCATCATGTGG
TTGGGACGGATTGATCAAGCTTTGGGAGTAGGATAGTTAATTTGAGGGAG
GGGAGTGGAACGGGTGTGTGGTTTGGTGGGCGGGATCAGGCATACGATAG
AGTTTTGTAAGGCAAGACGAAAAAAGAAAAAGCAACCTGC
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protein sequence of jgi.p|Nanoce1779_2|577659

>mRNA_548-protein ID=mRNA_548-protein|Name=jgi.p|Nanoce1779_2|577659|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MEAGEEEEELGEEDDGPWAPVKGGPVLTELEAGTLTEEQKRHRKELAERK
ALKHRGYDEEEDHDRRDERKVAHLLPPRHDRDTVASEPSTQFHGKGQKDY
QGRSWVEPPAGLREVETDHPCYLPKRCTHRYAGHEKGVQAIEFSPGTGHL
LLSGSLDGTCKMWSVYGERQLRRTYSGHGAAVRCINFNADGTRFLSGGFD
RFLRLWDTETGQCISTVTNRKVPYAAKFYPPNDKLFVFAASDNRLYTFDW
TSGEMVQEYNHHLSAVNTVTFYDNNTKFASTSDDKKMLLWEWDIPVPIKY
IAEPGMHSMPAVTPSPDGGFVACQSLDNTIKIFSCRDRFKLLHKKVFKGH
TIAGFACQPAFSPNNRYLASGDGEGKLHFWDFKNTRSLAKYRAHDNGPCI
GLTWHPVESSMVASCGWDGLIKLWE*
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mRNA from alignment at scaffold_3:1324740..1326179-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_548 ID=mRNA_548|Name=jgi.p|Nanoce1779_2|577659|organism=Nannochloropsis oceanica|type=mRNA|length=1440bp|location=Sequence derived from alignment at scaffold_3:1324740..1326179- (Nannochloropsis oceanica)
AGCAACAACAGGAGCGACAGCAACAAATACAGCAACAGCGGCGGAAGCGG
AAGATGGAGGCAGGGGAGGAGGAGGAGGAGTTGGGGGAGGAGGATGACGG
GCCATGGGCGCCCGTGAAGGGCGGCCCAGTCCTGACAGAGCTGGAGGCAG
GAACGCTAACGGAAGAACAAAAGCGACACCGGAAGGAGCTGGCGGAGCGG
AAGGCGCTTAAGCACAGGGGGTACGACGAGGAGGAGGATCACGATCGACG
GGACGAACGGAAGGTGGCTCATTTATTGCCGCCGCGGCATGACCGAGATA
CGGTCGCCTCTGAGCCCAGCACGCAATTCCATGGCAAGGGCCAGAAAGAC
TATCAGGGCCGGTCATGGGTGGAGCCACCGGCGGGGCTGCGGGAGGTGGA
GACGGACCACCCTTGTTATTTGCCCAAGCGGTGTACGCACAGGTATGCGG
GGCATGAGAAGGGGGTGCAAGCTATTGAGTTCTCCCCTGGCACCGGCCAC
TTGCTTTTATCCGGATCGCTGGATGGGACATGTAAGATGTGGTCTGTGTA
TGGCGAGCGGCAGCTGCGGAGGACGTACTCGGGGCATGGAGCAGCGGTGC
GATGTATTAATTTCAATGCAGATGGCACGCGCTTCTTGAGCGGGGGCTTC
GATCGGTTTTTGCGGTTGTGGGACACGGAGACGGGGCAGTGCATCTCGAC
GGTGACCAACCGGAAAGTGCCGTATGCAGCAAAGTTCTACCCGCCCAACG
ATAAGTTGTTTGTTTTTGCGGCGTCGGATAACAGGCTTTACACGTTTGAT
TGGACGTCGGGGGAGATGGTGCAGGAATATAACCACCACTTGTCAGCCGT
GAACACCGTCACTTTCTACGACAATAACACGAAGTTTGCCTCCACTTCGG
ATGATAAGAAGATGCTGTTGTGGGAGTGGGATATTCCGGTACCGATCAAG
TACATCGCTGAGCCCGGTATGCACTCAATGCCTGCCGTCACCCCCTCCCC
AGATGGAGGCTTTGTCGCCTGTCAGTCTCTAGATAACACCATTAAGATCT
TTTCTTGCCGCGATCGCTTCAAGCTTTTGCACAAGAAGGTGTTCAAGGGG
CATACTATCGCAGGTTTTGCGTGTCAGCCGGCATTTTCACCGAACAATCG
GTACCTGGCTTCAGGGGATGGGGAAGGGAAGTTGCATTTTTGGGACTTTA
AGAACACGCGGTCTTTGGCAAAGTATCGGGCGCATGACAACGGCCCTTGC
ATTGGCTTGACCTGGCACCCTGTGGAATCATCCATGGTCGCATCATGTGG
TTGGGACGGATTGATCAAGCTTTGGGAGTAGGATAGTTAATTTGAGGGAG
GGGAGTGGAACGGGTGTGTGGTTTGGTGGGCGGGATCAGGCATACGATAG
AGTTTTGTAAGGCAAGACGAAAAAAGAAAAAGCAACCTGC
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Coding sequence (CDS) from alignment at scaffold_3:1324740..1326179-

>mRNA_548 ID=mRNA_548|Name=jgi.p|Nanoce1779_2|577659|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_3:1324740..1326179- (Nannochloropsis oceanica)
ATGGAGGCAGGGGAGGAGGAGGAGGAGTTGGGGGAGGAGGATGACGGGCC
ATGGGCGCCCGTGAAGGGCGGCCCAGTCCTGACAGAGCTGGAGGCAGGAA
CGCTAACGGAAGAACAAAAGCGACACCGGAAGGAGCTGGCGGAGCGGAAG
GCGCTTAAGCACAGGGGGTACGACGAGGAGGAGGATCACGATCGACGGGA
CGAACGGAAGGTGGCTCATTTATTGCCGCCGCGGCATGACCGAGATACGG
TCGCCTCTGAGCCCAGCACGCAATTCCATGGCAAGGGCCAGAAAGACTAT
CAGGGCCGGTCATGGGTGGAGCCACCGGCGGGGCTGCGGGAGGTGGAGAC
GGACCACCCTTGTTATTTGCCCAAGCGGTGTACGCACAGGTATGCGGGGC
ATGAGAAGGGGGTGCAAGCTATTGAGTTCTCCCCTGGCACCGGCCACTTG
CTTTTATCCGGATCGCTGGATGGGACATGTAAGATGTGGTCTGTGTATGG
CGAGCGGCAGCTGCGGAGGACGTACTCGGGGCATGGAGCAGCGGTGCGAT
GTATTAATTTCAATGCAGATGGCACGCGCTTCTTGAGCGGGGGCTTCGAT
CGGTTTTTGCGGTTGTGGGACACGGAGACGGGGCAGTGCATCTCGACGGT
GACCAACCGGAAAGTGCCGTATGCAGCAAAGTTCTACCCGCCCAACGATA
AGTTGTTTGTTTTTGCGGCGTCGGATAACAGGCTTTACACGTTTGATTGG
ACGTCGGGGGAGATGGTGCAGGAATATAACCACCACTTGTCAGCCGTGAA
CACCGTCACTTTCTACGACAATAACACGAAGTTTGCCTCCACTTCGGATG
ATAAGAAGATGCTGTTGTGGGAGTGGGATATTCCGGTACCGATCAAGTAC
ATCGCTGAGCCCGGTATGCACTCAATGCCTGCCGTCACCCCCTCCCCAGA
TGGAGGCTTTGTCGCCTGTCAGTCTCTAGATAACACCATTAAGATCTTTT
CTTGCCGCGATCGCTTCAAGCTTTTGCACAAGAAGGTGTTCAAGGGGCAT
ACTATCGCAGGTTTTGCGTGTCAGCCGGCATTTTCACCGAACAATCGGTA
CCTGGCTTCAGGGGATGGGGAAGGGAAGTTGCATTTTTGGGACTTTAAGA
ACACGCGGTCTTTGGCAAAGTATCGGGCGCATGACAACGGCCCTTGCATT
GGCTTGACCTGGCACCCTGTGGAATCATCCATGGTCGCATCATGTGGTTG
GGACGGATTGATCAAGCTTTGGGAGTAG
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Synonyms
Publications