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Properties
| Property Name | Value |
|---|
| TranscriptId | 68279 |
| Track | FilteredModels2 |
| ProteinId | 68193 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:510385..512558 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5479 ID=mRNA_5479|Name=jgi.p|Nanoce1779_2|68193|organism=Nannochloropsis oceanica|type=mRNA|length=1927bp
GTGACTCGGAGCGGTTGCGGACAGGAGGGAGGAGCTTTAGTGCCGCCTTC
ACGACCCACGCACAGGAGCATTCAGCGCGCCTTTGCGTAAGTCTAAGTCG
CCCAGACGTACTCTTCTAGTTGCGATTGGTTTCTACGTGGCAAAGCCAGA
AAATGCCCCATACGAGCCAGGGGAGGCCCCACACGACACTCCCTCTTTCT
TGCTCAAGCACGGTCATCCTTCTTACCCGTACACCCCTGCCACAAACAAA
CACATAGAGCCACTTTCAGCAGCACAAGCGTGAGCACTACCAGGAGATAA
ACGCCTCGACCGTCATGGCACGGCCTTGGTGTTTCTACCACGTCCAGGGC
GAAGAGGGAGAGAGCGAGGACGAACCCAACGCCTTTGTCCTCCCTCCCTC
TGACACAACTGGGCACGTGACCCTCAGGCACTTCCTTGCCGCCTTTCCCC
TGGCCAACAAGCAAGATAGTGACGACCGGGTGTATCACGCTCGATTCAAG
GTAAAGGACAAGATTTGTGGGTTTGCGTGGCAAGATGTCCAGGATGCCCA
AGCACCTCTGCCTTTTTTCCAAGGCGCCCTTCACGCCAAGATCCTCCGTC
TGGACATTGTCCCCAAGCCCATCTCTCGGCTGCGTCGGAAGCCCTTGGTC
AATATAGCAGGAGGGAGTGGAGGAGGAGAACAACGGAGAATTGAACTCAA
GACATCGGCGGGTGTCCGTGTCAAGCCCCCTTCCTCGTACGTCCCATCCC
CAGCTCCTCCTACACCACGCCACCACCAAAATCAAACCTCCACCTCACGC
AAAGCTTCCCGACCTGCCCCTCCTTCGTCTACATTATTGACTCCACAAAG
GATAGCATCACCCTCTAACGGACCGGCGCATGGCAGTAGTGGGAATAGCC
ACATGGACTCTCGCATTTGCAACGGAGCAGGAGAGGGAGGAGTACGAGGA
AGTGCCTCCGCATTCACACCACCGTCACCGCCCCCATATCCCGTCAAGCC
ATCGTCTTCTACCGGTGGCGATGATCTGGACAGCTTCTTGTACGGAGGCG
GCAACAGCAGTGGCAGCAATGGTGGCACTATCCCTGGACCTCGCCAGCAG
CACCAACCCCCACGACCACCACCCACCAACGCAGCATCCCCCGTGCGCTC
CTCTCCTTCTCCTCCTCCTACCACCAGAGTCTCCCCCCCCCCCCTCTTCA
GCCCGCATCAACTCCAGCAGCCCTGCTCCGCGTCCCAGCCCTCCCCTCAG
CGCAGCGACGGCAGCAGTGGCAACAACAAAAATGGCAGCAGGAGCACCAC
TCCCATCCCTCCCAATCCCACGGCAAATGCCACGCCCGAAGAGCTGTTTT
TCATGCAGCCCACAAGCGTCAAGCAGGCCGAAGCCGCCAAGGAAGAGCAA
GAGCAAGAGGCGCTCCGTCACAAGTTGCTCCCTCGCCTGGATGCTTGGGC
ACGAGATCCCCCCCAAGCAGGTGGTAAATTACGGAATGTTCGCACCTTGC
TCTCGACCATGCACACGGTCTTGTGGCCGGGGTGTGTGAGTTGGAAGCCT
GTCTTTTTGGGAGATCTGATGGCGCCCGATCGTGTCAAGTTTCATTACCG
GAAGGCCATGTTAGTGGTGCACCCGGACAAGAACGTGAACGGCTCGGCGG
AGCAGCGGTTTGTGGCGGAGAAGGTGTTCACCAGCGTGAACGAGGCCTAC
ACATTGTTTGCGGCTCAAGAGATGAAATGAACCATGACAAGTTGACATGC
CGTAGTACCCTCAGCAGGAGAGACTGGTGTTTTCACGCGTATTTATATTC
GACTTACCCCTCCTCGGCGACTTGGAGAGATATAGAAATTAGACAAGACC
GACACGAAAGGAAGGGGCAGGAAGGGAATCACAAATTGTACTTTAAATAA
ATTTACATCGAGGTGTTTAGATGTGCT back to topprotein sequence of jgi.p|Nanoce1779_2|68193 >mRNA_5479-protein ID=mRNA_5479-protein|Name=jgi.p|Nanoce1779_2|68193|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MARPWCFYHVQGEEGESEDEPNAFVLPPSDTTGHVTLRHFLAAFPLANKQ
DSDDRVYHARFKVKDKICGFAWQDVQDAQAPLPFFQGALHAKILRLDIVP
KPISRLRRKPLVNIAGGSGGGEQRRIELKTSAGVRVKPPSSYVPSPAPPT
PRHHQNQTSTSRKASRPAPPSSTLLTPQRIASPSNGPAHGSSGNSHMDSR
ICNGAGEGGVRGSASAFTPPSPPPYPVKPSSSTGGDDLDSFLYGGGNSSG
SNGGTIPGPRQQHQPPRPPPTNAASPVRSSPSPPPTTRVSPPPLFSPHQL
QQPCSASQPSPQRSDGSSGNNKNGSRSTTPIPPNPTANATPEELFFMQPT
SVKQAEAAKEEQEQEALRHKLLPRLDAWARDPPQAGGKLRNVRTLLSTMH
TVLWPGCVSWKPVFLGDLMAPDRVKFHYRKAMLVVHPDKNVNGSAEQRFV
AEKVFTSVNEAYTLFAAQEMK* back to topmRNA from alignment at scaffold_13:510385..512558- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5479 ID=mRNA_5479|Name=jgi.p|Nanoce1779_2|68193|organism=Nannochloropsis oceanica|type=mRNA|length=2174bp|location=Sequence derived from alignment at scaffold_13:510385..512558- (Nannochloropsis oceanica)
GTGACTCGGAGCGGTTGCGGACAGGAGGGAGGAGCTTTAGTGCCGCCTTC
ACGACCCACGCACAGGAGCATTCAGCGCGCCTTTGCGTAAGTCTAAGTCG
CCCAGACGTACTCTTCTAGTTGCGATTGGTTTCTACGTGGCAAAGCCAGA
AAATGCCCCATACGAGCCAGGGGAGGCCCCACACGACACTCCCTCTTTCT
TGCTCAAGCACGGTCATCCTTCTTACCCGTACACCCCTGCCACAAACAAA
CACATAGAGCCACTTTCAGCAGCACAAGCGTGAGCACTACCAGGAGATAA
ACGCCTCGACCGTCATGGCACGGCCTTGGTGTTTCTACCACGTCCAGGGC
GAAGAGGGAGAGAGCGAGGACGAACCCAACGCCTTTGTCCTCCCTCCCTC
TGACACAACTGGGCACGTGACCCTCAGGCACTTCCTTGCCGCCTTTCCCC
TGGCCAACAAGCAAGATAGTGACGACCGGGTGTATCACGCTCGATTCAAG
GTAAAGGACAAGATTTGTGGGTTTGCGTGGCAAGATGTCCAGGATGCCCA
AGCACCTCTGCCTTTTTTCCAAGGCGCCCTTCACGCCAAGATCCTCCGTC
TGGACATTGTCCCCAAGCCCATCTCTCGGCTGCGTCGGAAGCCCTTGGTC
AATATAGCAGGAGGGAGTGGAGGAGGAGAACAACGGAGAATTGAACTCAA
GACATCGGCGGGTGTCCGTGTCAAGCCCCCTTCCTCGTACGTCCCATCCC
CAGCTCCTCCTACACCACGCCACCACCAAAATCAAACCTCCACCTCACGC
AAAGCTTCCCGACCTGCCCCTCCTTCGTCTACATTATTGACTCCACAAAG
GATAGCATCACCCTCTAACGGACCGGCGCATGGCAGTAGTGGGAATAGCC
ACATGGACTCTCGCATTTGCAACGGAGCAGGAGAGGGAGGAGTACGAGGA
AGTGCCTCCGCATTCACACCACCGTCACCGCCCCCATATCCCGTCAAGCC
ATCGTCTTCTACCGGTGGCGATGATCTGGACAGCTTCTTGTACGGAGGCG
GCAACAGCAGTGGCAGCAATGGTGGCACTATCCCTGGACCTCGCCAGCAG
CACCAACCCCCACGACCACCACCCACCAACGCAGCATCCCCCGTGCGCTC
CTCTCCTTCTCCTCCTCCTACCACCAGAGTCTCCCCCCCCCCCCTCTTCA
GCCCGCATCAACTCCAGCAGCCCTGCTCCGCGTCCCAGCCCTCCCCTCAG
CGCAGGTATGGCTGGTCTCGACATAGACGACGACGACGACGACGACGACG
ACGCCCCTTACCCCTTCTCCACCACCACCAAAACCAGCGACGGCAGCAGT
GGCAACAACAAAAATGGCAGCAGGAGCACCACTCCCATCCCTCCCAATCC
CACGGCAAATGCCACGCCCGAAGAGCTGTTTTTCATGCAGCCCACAAGCG
TCAAGCAGGCCGAAGCCGCCAAGGAAGAGCAAGAGCAAGAGGCGCTCCGT
CACAAGTTGCTCCCTCGCCTGGATGCTTGGGCACGAGATCCCCCCCAAGC
AGGTGGTAAATTACGGAATGTTCGCACCTTGCTCTCGACCATGCACACGG
TCTTGTGGCCGGGGTGTGTGAGTTGGAAGCCTGTCTTTTTGGGAGATCTG
ATGGCGCCCGATCGTGTCAAGTTTCATTACCGGAAGGCCATGTTAGTGGT
GCACCCGGACAAGAACGTGAACGGCTCGGCGGAGCAGCGGTTTGTGGCGG
AGAAGGTACGGGAGGGAGGGAAGGAGGGAGGGAGGAAGGGGGGAAGGCAG
GGAGGCAGGATGGTGGGGTGTGCTCGGAGAAGGTCGTTTAAGCATGTTGC
ACAGGCACGGACTCATACTCACTCCTCCCTCCCTCCCTCCCCCCTTTCCA
CATCTCTTTCACGCTCACAGGTGTTCACCAGCGTGAACGAGGCCTACACA
TTGTTTGCGGCTCAAGAGATGAAATGAACCATGACAAGTTGACATGCCGT
AGTACCCTCAGCAGGAGAGACTGGTGTTTTCACGCGTATTTATATTCGAC
TTACCCCTCCTCGGCGACTTGGAGAGATATAGAAATTAGACAAGACCGAC
ACGAAAGGAAGGGGCAGGAAGGGAATCACAAATTGTACTTTAAATAAATT
TACATCGAGGTGTTTAGATGTGCT back to topCoding sequence (CDS) from alignment at scaffold_13:510385..512558- >mRNA_5479 ID=mRNA_5479|Name=jgi.p|Nanoce1779_2|68193|organism=Nannochloropsis oceanica|type=CDS|length=4248bp|location=Sequence derived from alignment at scaffold_13:510385..512558- (Nannochloropsis oceanica)
GTGTTCACCAGCGTGAACGAGGCCTACACATTGTTTGCGGCTCAAGAGAT
GAAATGACGACGGCAGCAGTGGCAACAACAAAAATGGCAGCAGGAGCACC
ACTCCCATCCCTCCCAATCCCACGGCAAATGCCACGCCCGAAGAGCTGTT
TTTCATGCAGCCCACAAGCGTCAAGCAGGCCGAAGCCGCCAAGGAAGAGC
AAGAGCAAGAGGCGCTCCGTCACAAGTTGCTCCCTCGCCTGGATGCTTGG
GCACGAGATCCCCCCCAAGCAGGTGGTAAATTACGGAATGTTCGCACCTT
GCTCTCGACCATGCACACGGTCTTGTGGCCGGGGTGTGTGAGTTGGAAGC
CTGTCTTTTTGGGAGATCTGATGGCGCCCGATCGTGTCAAGTTTCATTAC
CGGAAGGCCATGTTAGTGGTGCACCCGGACAAGAACGTGAACGGCTCGGC
GGAGCAGCGGTTTGTGGCGGAGAAGATGGCACGGCCTTGGTGTTTCTACC
ACGTCCAGGGCGAAGAGGGAGAGAGCGAGGACGAACCCAACGCCTTTGTC
CTCCCTCCCTCTGACACAACTGGGCACGTGACCCTCAGGCACTTCCTTGC
CGCCTTTCCCCTGGCCAACAAGCAAGATAGTGACGACCGGGTGTATCACG
CTCGATTCAAGGTAAAGGACAAGATTTGTGGGTTTGCGTGGCAAGATGTC
CAGGATGCCCAAGCACCTCTGCCTTTTTTCCAAGGCGCCCTTCACGCCAA
GATCCTCCGTCTGGACATTGTCCCCAAGCCCATCTCTCGGCTGCGTCGGA
AGCCCTTGGTCAATATAGCAGGAGGGAGTGGAGGAGGAGAACAACGGAGA
ATTGAACTCAAGACATCGGCGGGTGTCCGTGTCAAGCCCCCTTCCTCGTA
CGTCCCATCCCCAGCTCCTCCTACACCACGCCACCACCAAAATCAAACCT
CCACCTCACGCAAAGCTTCCCGACCTGCCCCTCCTTCGTCTACATTATTG
ACTCCACAAAGGATAGCATCACCCTCTAACGGACCGGCGCATGGCAGTAG
TGGGAATAGCCACATGGACTCTCGCATTTGCAACGGAGCAGGAGAGGGAG
GAGTACGAGGAAGTGCCTCCGCATTCACACCACCGTCACCGCCCCCATAT
CCCGTCAAGCCATCGTCTTCTACCGGTGGCGATGATCTGGACAGCTTCTT
GTACGGAGGCGGCAACAGCAGTGGCAGCAATGGTGGCACTATCCCTGGAC
CTCGCCAGCAGCACCAACCCCCACGACCACCACCCACCAACGCAGCATCC
CCCGTGCGCTCCTCTCCTTCTCCTCCTCCTACCACCAGAGTCTCCCCCCC
CCCCCTCTTCAGCCCGCATCAACTCCAGCAGCCCTGCTCCGCGTCCCAGC
CCTCCCCTCAGCGCAGGTGTTCACCAGCGTGAACGAGGCCTACACATTGT
TTGCGGCTCAAGAGATGAAATGACGACGGCAGCAGTGGCAACAACAAAAA
TGGCAGCAGGAGCACCACTCCCATCCCTCCCAATCCCACGGCAAATGCCA
CGCCCGAAGAGCTGTTTTTCATGCAGCCCACAAGCGTCAAGCAGGCCGAA
GCCGCCAAGGAAGAGCAAGAGCAAGAGGCGCTCCGTCACAAGTTGCTCCC
TCGCCTGGATGCTTGGGCACGAGATCCCCCCCAAGCAGGTGGTAAATTAC
GGAATGTTCGCACCTTGCTCTCGACCATGCACACGGTCTTGTGGCCGGGG
TGTGTGAGTTGGAAGCCTGTCTTTTTGGGAGATCTGATGGCGCCCGATCG
TGTCAAGTTTCATTACCGGAAGGCCATGTTAGTGGTGCACCCGGACAAGA
ACGTGAACGGCTCGGCGGAGCAGCGGTTTGTGGCGGAGAAGATGGCACGG
CCTTGGTGTTTCTACCACGTCCAGGGCGAAGAGGGAGAGAGCGAGGACGA
ACCCAACGCCTTTGTCCTCCCTCCCTCTGACACAACTGGGCACGTGACCC
TCAGGCACTTCCTTGCCGCCTTTCCCCTGGCCAACAAGCAAGATAGTGAC
GACCGGGTGTATCACGCTCGATTCAAGGTAAAGGACAAGATTTGTGGGTT
TGCGTGGCAAGATGTCCAGGATGCCCAAGCACCTCTGCCTTTTTTCCAAG
GCGCCCTTCACGCCAAGATCCTCCGTCTGGACATTGTCCCCAAGCCCATC
TCTCGGCTGCGTCGGAAGCCCTTGGTCAATATAGCAGGAGGGAGTGGAGG
AGGAGAACAACGGAGAATTGAACTCAAGACATCGGCGGGTGTCCGTGTCA
AGCCCCCTTCCTCGTACGTCCCATCCCCAGCTCCTCCTACACCACGCCAC
CACCAAAATCAAACCTCCACCTCACGCAAAGCTTCCCGACCTGCCCCTCC
TTCGTCTACATTATTGACTCCACAAAGGATAGCATCACCCTCTAACGGAC
CGGCGCATGGCAGTAGTGGGAATAGCCACATGGACTCTCGCATTTGCAAC
GGAGCAGGAGAGGGAGGAGTACGAGGAAGTGCCTCCGCATTCACACCACC
GTCACCGCCCCCATATCCCGTCAAGCCATCGTCTTCTACCGGTGGCGATG
ATCTGGACAGCTTCTTGTACGGAGGCGGCAACAGCAGTGGCAGCAATGGT
GGCACTATCCCTGGACCTCGCCAGCAGCACCAACCCCCACGACCACCACC
CACCAACGCAGCATCCCCCGTGCGCTCCTCTCCTTCTCCTCCTCCTACCA
CCAGAGTCTCCCCCCCCCCCCTCTTCAGCCCGCATCAACTCCAGCAGCCC
TGCTCCGCGTCCCAGCCCTCCCCTCAGCGCAGGTGTTCACCAGCGTGAAC
GAGGCCTACACATTGTTTGCGGCTCAAGAGATGAAATGACGACGGCAGCA
GTGGCAACAACAAAAATGGCAGCAGGAGCACCACTCCCATCCCTCCCAAT
CCCACGGCAAATGCCACGCCCGAAGAGCTGTTTTTCATGCAGCCCACAAG
CGTCAAGCAGGCCGAAGCCGCCAAGGAAGAGCAAGAGCAAGAGGCGCTCC
GTCACAAGTTGCTCCCTCGCCTGGATGCTTGGGCACGAGATCCCCCCCAA
GCAGGTGGTAAATTACGGAATGTTCGCACCTTGCTCTCGACCATGCACAC
GGTCTTGTGGCCGGGGTGTGTGAGTTGGAAGCCTGTCTTTTTGGGAGATC
TGATGGCGCCCGATCGTGTCAAGTTTCATTACCGGAAGGCCATGTTAGTG
GTGCACCCGGACAAGAACGTGAACGGCTCGGCGGAGCAGCGGTTTGTGGC
GGAGAAGATGGCACGGCCTTGGTGTTTCTACCACGTCCAGGGCGAAGAGG
GAGAGAGCGAGGACGAACCCAACGCCTTTGTCCTCCCTCCCTCTGACACA
ACTGGGCACGTGACCCTCAGGCACTTCCTTGCCGCCTTTCCCCTGGCCAA
CAAGCAAGATAGTGACGACCGGGTGTATCACGCTCGATTCAAGGTAAAGG
ACAAGATTTGTGGGTTTGCGTGGCAAGATGTCCAGGATGCCCAAGCACCT
CTGCCTTTTTTCCAAGGCGCCCTTCACGCCAAGATCCTCCGTCTGGACAT
TGTCCCCAAGCCCATCTCTCGGCTGCGTCGGAAGCCCTTGGTCAATATAG
CAGGAGGGAGTGGAGGAGGAGAACAACGGAGAATTGAACTCAAGACATCG
GCGGGTGTCCGTGTCAAGCCCCCTTCCTCGTACGTCCCATCCCCAGCTCC
TCCTACACCACGCCACCACCAAAATCAAACCTCCACCTCACGCAAAGCTT
CCCGACCTGCCCCTCCTTCGTCTACATTATTGACTCCACAAAGGATAGCA
TCACCCTCTAACGGACCGGCGCATGGCAGTAGTGGGAATAGCCACATGGA
CTCTCGCATTTGCAACGGAGCAGGAGAGGGAGGAGTACGAGGAAGTGCCT
CCGCATTCACACCACCGTCACCGCCCCCATATCCCGTCAAGCCATCGTCT
TCTACCGGTGGCGATGATCTGGACAGCTTCTTGTACGGAGGCGGCAACAG
CAGTGGCAGCAATGGTGGCACTATCCCTGGACCTCGCCAGCAGCACCAAC
CCCCACGACCACCACCCACCAACGCAGCATCCCCCGTGCGCTCCTCTCCT
TCTCCTCCTCCTACCACCAGAGTCTCCCCCCCCCCCCTCTTCAGCCCGCA
TCAACTCCAGCAGCCCTGCTCCGCGTCCCAGCCCTCCCCTCAGCGCAG back to top
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