jgi.p|Nanoce1779_2|592640, mRNA_5474 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592640
Unique Name	mRNA_5474
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2630
Alignment location	scaffold_13:499448..502077 -

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Properties


Property Name	Value
TranscriptId	592726
Track	FilteredModels2
ProteinId	592640

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:499448..502077 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592640	gene_5474	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592640	mRNA_5474-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5474	CDS_5474	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:499448..502077-
coding sequence from alignment at scaffold_13:499448..502077-

mRNA sequence

>mRNA_5474 ID=mRNA_5474|Name=jgi.p|Nanoce1779_2|592640|organism=Nannochloropsis oceanica|type=mRNA|length=2630bp
GTCCATGCCGAGGATTCCCCACGAGTCGCCCCGCACTCGTTGAAGCACCC
TAAAGTTTTTTATGCCTACGCGATGGGCTGCCTTGAATCGTCGATACGTG
ACGTTGAATGACTATTGGATTTGGAAACACCCGAGTGGTGTTTTAAAAGT
GAGTTCCAGGAAGGTTGCCGTTGTGTTAGATTGCAGGGTGTGGGACTAAA
CGTGGTCGCAAGTTGCAAGACCACTACTTGTGAAAACATATGTTTCCGCT
TATTCGAACTTCTCGGAGACCGCTTCGGTTTTGAAGAAGGGCGAGTAAGC
TACGCCAACACTAGTGCAGGAAGACGATCATTTTTATCGGGGCTGATTGC
AAGTCTGAGGGAGTCGACAAAACACCACGGTCTTCTTATTTTACCCGTGC
TCACCTCACGACTGATGGTTTGAGTGGCTCTCGTGATTCTCACAAGTGAG
CGATTGGTTGTGCTTTTTATGTTAAATCGGCCCTTGGAAGGTCGACAGAC
GGCCGTTCCAGCGCACAACACCCTTTGCGACCAGCCATTTCACACGATGT
CCAACCACCAACCCACGAAATTAGGCCATACTCTCACCAACAGACGGCAA
CGCCCCCGCAAACTAAGCTGATTCAGAGGAAGCAGGAAACTGAGCTGGGT
GAGAGGAGGCATCATCTTCGAAAAAGAAGCACACCCACCGCGGTGTCCTG
TTCATCCACTGACCATAGAGGGCCACAAACTTTACCCCCTCGACTTCTAT
CGACCTGTTGCGGTCACAATCTATGTGTGCAACGGCCCAGTATCGAAATT
CTCCACTGGACCTGCAGAGCTTGTCCATGGCCAAGTCCGCTCCCATGGTG
GCTTCCCGCACTCAGGCCCTCATCGACCGAAGCGAAATTTTGGCACACGG
TGGCCGCGCCTTTGTGGAGAACGTGAAAACGATGGCAGCTTCAGGCATGC
TGGACCGGCAAAAGATGATACACTGGGTGAGAATTGTCTCCCTCTTTAAC
AAGGCCACTGGCAAGGACACATCCCACGGGCTTATTGACATGATCCACAA
CCTCTTGTCTGACATGCGCTTGACCCACGAGGAGCGGCTGCAGCAGCAGG
AAGAGGAGCAATGCAGAGGTGATAGCCGTGCTCATGCAACCGACTTCAAA
CATCCTGAGATGGACGAGCTTGCCTGCTACATAGTTTCTCGCGGGGGACA
CGGTGCGGAGACCATGTTCTGCAGTGAGGCGATGAAGCAGCTCTTCATCT
CCACCGACGAGCTAACGATGACCGTACAAGAAACGGGACTCACCTCTTTA
TCTGTTTGGGCCACCTTCACAACGCGTGAGGGACTGGCGACGCTGAATCG
GGCGGCATCTACAGTTTTCTTGCAAAAGGGCACAGAGCATGTGGAGGTGG
AAGTGGAGTGTCTGACCAGGACAGGCTTGCTTGTCGTATGTGCGGCCACT
GTCAGTTTCCGTGTGTTTGGGAATGGAAAGAGCACCTTGATCCTCACCCT
AACTGTCAAGCAAGATGCACCTCCTCGTGCCGTCACCTCCTCCTTTGCCT
CCCGAAAGCACACGGTGTCAGAGAATGGAGCAGCAGAAAGGGAAGCAGGG
ATATCGTCTGGTACGCGGCGCACCACCTACTCTTCGGAACGTCTGGCTGC
ATTGGCCAGCAAGAGGAAGTACGGGGAGGAGCAGAAGCACCGACAGCTGG
TGCAACAGCAGCAACAGGAAGGGCGAAGGCGCCGTCCCCGCCCGCTAGAC
GAGACACCGCCTTCCTCCACCACCACCTCCATCTCTCCCTCCCCTTCAAC
CGCCTCCTTCTCTTCCTTAACCTCCACCTCAACTTTGTCTTCTTCTTCCT
CTCTTCCCCCTTCCTCCATCCCCTCTTCTCCTTTCCTCCCTTCCTCTCGC
CCCCCCCCCCAACGCATCGCTGTGTCAAGCAAGCGTCGGAAAATTCCCTC
GACTGTGGCCTGGAGCCAAGAAGGCCCTCCTGTCCCTGAAGCGATTAGTC
GTCGCCTCGCCACTTGTTCTACAAATCCCCCCTTTATGACTGGACGTGGG
GTTTCATATGATAAGGAGGATAAAGTATTCGCCTTTGCAGCCATCCCCGA
ACAGCAACAGCAGTTGCAGCAGCAGCAACAGCAGCAGTTGCAGGTTGGGT
TGTGGGACGGGGAGGAGGAAGAGCACAATCATTTGCAACGATGGGTTTTT
TTACATCAGCAACAGAAGCAGCTGCCACATGAGCAACCTCAGCAGGAACC
ACAACAGCAGCAGCAGCAGCAGGTGGCGTTGGCCCCTGCTTGTCTTCTTC
CTTCGGCGTTTTCGGCGCTTGTCTCCTTGCCCGGAGTGCCCTCACCTCAC
ATTTTTGTCGGAAACAGCAACGAGGACAATAGGAGCAGCGGTGACGGGAG
CACAGAGCATGAAGATGAGGAGGTGCATCAGGAGCAAATGCTGCAGCCGC
AACCGCAGCCGCAGCCGCCGCCGCCGCCGCCGCAGCAAGTGCCGGAACTG
AAGATGGATGCGAATGAGGATCACGTGTGGGCATGGGCCAATGCGATTTG
GGAGGAAGCTGATGGCGCGCTACAGCCACCTCTTGATCTGGGTGCTGGGA
CGGAAGCAGGGTTGATAGCAGTTGATGAGA

protein sequence of jgi.p|Nanoce1779_2|592640

>mRNA_5474-protein ID=mRNA_5474-protein|Name=jgi.p|Nanoce1779_2|592640|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MCGHCQFPCVWEWKEHLDPHPNCQARCTSSCRHLLLCLPKAHGVREWSSR
KGSRDIVWYAAHHLLFGTSGCIGQQEEVRGGAEAPTAGATAATGRAKAPS
PPARRDTAFLHHHLHLSLPFNRLLLFLNLHLNFVFFFLSSPFLHPLFSFP
PFLSPPPPTHRCVKQASENSLDCGLEPRRPSCP*

mRNA from alignment at scaffold_13:499448..502077-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5474 ID=mRNA_5474|Name=jgi.p|Nanoce1779_2|592640|organism=Nannochloropsis oceanica|type=mRNA|length=2630bp|location=Sequence derived from alignment at scaffold_13:499448..502077- (Nannochloropsis oceanica)
GTCCATGCCGAGGATTCCCCACGAGTCGCCCCGCACTCGTTGAAGCACCC
TAAAGTTTTTTATGCCTACGCGATGGGCTGCCTTGAATCGTCGATACGTG
ACGTTGAATGACTATTGGATTTGGAAACACCCGAGTGGTGTTTTAAAAGT
GAGTTCCAGGAAGGTTGCCGTTGTGTTAGATTGCAGGGTGTGGGACTAAA
CGTGGTCGCAAGTTGCAAGACCACTACTTGTGAAAACATATGTTTCCGCT
TATTCGAACTTCTCGGAGACCGCTTCGGTTTTGAAGAAGGGCGAGTAAGC
TACGCCAACACTAGTGCAGGAAGACGATCATTTTTATCGGGGCTGATTGC
AAGTCTGAGGGAGTCGACAAAACACCACGGTCTTCTTATTTTACCCGTGC
TCACCTCACGACTGATGGTTTGAGTGGCTCTCGTGATTCTCACAAGTGAG
CGATTGGTTGTGCTTTTTATGTTAAATCGGCCCTTGGAAGGTCGACAGAC
GGCCGTTCCAGCGCACAACACCCTTTGCGACCAGCCATTTCACACGATGT
CCAACCACCAACCCACGAAATTAGGCCATACTCTCACCAACAGACGGCAA
CGCCCCCGCAAACTAAGCTGATTCAGAGGAAGCAGGAAACTGAGCTGGGT
GAGAGGAGGCATCATCTTCGAAAAAGAAGCACACCCACCGCGGTGTCCTG
TTCATCCACTGACCATAGAGGGCCACAAACTTTACCCCCTCGACTTCTAT
CGACCTGTTGCGGTCACAATCTATGTGTGCAACGGCCCAGTATCGAAATT
CTCCACTGGACCTGCAGAGCTTGTCCATGGCCAAGTCCGCTCCCATGGTG
GCTTCCCGCACTCAGGCCCTCATCGACCGAAGCGAAATTTTGGCACACGG
TGGCCGCGCCTTTGTGGAGAACGTGAAAACGATGGCAGCTTCAGGCATGC
TGGACCGGCAAAAGATGATACACTGGGTGAGAATTGTCTCCCTCTTTAAC
AAGGCCACTGGCAAGGACACATCCCACGGGCTTATTGACATGATCCACAA
CCTCTTGTCTGACATGCGCTTGACCCACGAGGAGCGGCTGCAGCAGCAGG
AAGAGGAGCAATGCAGAGGTGATAGCCGTGCTCATGCAACCGACTTCAAA
CATCCTGAGATGGACGAGCTTGCCTGCTACATAGTTTCTCGCGGGGGACA
CGGTGCGGAGACCATGTTCTGCAGTGAGGCGATGAAGCAGCTCTTCATCT
CCACCGACGAGCTAACGATGACCGTACAAGAAACGGGACTCACCTCTTTA
TCTGTTTGGGCCACCTTCACAACGCGTGAGGGACTGGCGACGCTGAATCG
GGCGGCATCTACAGTTTTCTTGCAAAAGGGCACAGAGCATGTGGAGGTGG
AAGTGGAGTGTCTGACCAGGACAGGCTTGCTTGTCGTATGTGCGGCCACT
GTCAGTTTCCGTGTGTTTGGGAATGGAAAGAGCACCTTGATCCTCACCCT
AACTGTCAAGCAAGATGCACCTCCTCGTGCCGTCACCTCCTCCTTTGCCT
CCCGAAAGCACACGGTGTCAGAGAATGGAGCAGCAGAAAGGGAAGCAGGG
ATATCGTCTGGTACGCGGCGCACCACCTACTCTTCGGAACGTCTGGCTGC
ATTGGCCAGCAAGAGGAAGTACGGGGAGGAGCAGAAGCACCGACAGCTGG
TGCAACAGCAGCAACAGGAAGGGCGAAGGCGCCGTCCCCGCCCGCTAGAC
GAGACACCGCCTTCCTCCACCACCACCTCCATCTCTCCCTCCCCTTCAAC
CGCCTCCTTCTCTTCCTTAACCTCCACCTCAACTTTGTCTTCTTCTTCCT
CTCTTCCCCCTTCCTCCATCCCCTCTTCTCCTTTCCTCCCTTCCTCTCGC
CCCCCCCCCCAACGCATCGCTGTGTCAAGCAAGCGTCGGAAAATTCCCTC
GACTGTGGCCTGGAGCCAAGAAGGCCCTCCTGTCCCTGAAGCGATTAGTC
GTCGCCTCGCCACTTGTTCTACAAATCCCCCCTTTATGACTGGACGTGGG
GTTTCATATGATAAGGAGGATAAAGTATTCGCCTTTGCAGCCATCCCCGA
ACAGCAACAGCAGTTGCAGCAGCAGCAACAGCAGCAGTTGCAGGTTGGGT
TGTGGGACGGGGAGGAGGAAGAGCACAATCATTTGCAACGATGGGTTTTT
TTACATCAGCAACAGAAGCAGCTGCCACATGAGCAACCTCAGCAGGAACC
ACAACAGCAGCAGCAGCAGCAGGTGGCGTTGGCCCCTGCTTGTCTTCTTC
CTTCGGCGTTTTCGGCGCTTGTCTCCTTGCCCGGAGTGCCCTCACCTCAC
ATTTTTGTCGGAAACAGCAACGAGGACAATAGGAGCAGCGGTGACGGGAG
CACAGAGCATGAAGATGAGGAGGTGCATCAGGAGCAAATGCTGCAGCCGC
AACCGCAGCCGCAGCCGCCGCCGCCGCCGCCGCAGCAAGTGCCGGAACTG
AAGATGGATGCGAATGAGGATCACGTGTGGGCATGGGCCAATGCGATTTG
GGAGGAAGCTGATGGCGCGCTACAGCCACCTCTTGATCTGGGTGCTGGGA
CGGAAGCAGGGTTGATAGCAGTTGATGAGA

Coding sequence (CDS) from alignment at scaffold_13:499448..502077-

>mRNA_5474 ID=mRNA_5474|Name=jgi.p|Nanoce1779_2|592640|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_13:499448..502077- (Nannochloropsis oceanica)
ATGTGCGGCCACTGTCAGTTTCCGTGTGTTTGGGAATGGAAAGAGCACCT
TGATCCTCACCCTAACTGTCAAGCAAGATGCACCTCCTCGTGCCGTCACC
TCCTCCTTTGCCTCCCGAAAGCACACGGTGTCAGAGAATGGAGCAGCAGA
AAGGGAAGCAGGGATATCGTCTGGTACGCGGCGCACCACCTACTCTTCGG
AACGTCTGGCTGCATTGGCCAGCAAGAGGAAGTACGGGGAGGAGCAGAAG
CACCGACAGCTGGTGCAACAGCAGCAACAGGAAGGGCGAAGGCGCCGTCC
CCGCCCGCTAGACGAGACACCGCCTTCCTCCACCACCACCTCCATCTCTC
CCTCCCCTTCAACCGCCTCCTTCTCTTCCTTAACCTCCACCTCAACTTTG
TCTTCTTCTTCCTCTCTTCCCCCTTCCTCCATCCCCTCTTCTCCTTTCCT
CCCTTCCTCTCGCCCCCCCCCCCAACGCATCGCTGTGTCAAGCAAGCGTC
GGAAAATTCCCTCGACTGTGGCCTGGAGCCAAGAAGGCCCTCCTGTCCCT
GA

Synonyms

Publications