jgi.p|Nanoce1779_2|592630, mRNA_5472 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592630
Unique NamemRNA_5472
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length666
Alignment locationscaffold_13:493938..494603 +

Link to JBrowse

Properties
Property NameValue
TranscriptId592716
TrackFilteredModels2
ProteinId592630
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:493938..494603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592630gene_5472Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592630mRNA_5472-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5472CDS_5472Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5472 ID=mRNA_5472|Name=jgi.p|Nanoce1779_2|592630|organism=Nannochloropsis oceanica|type=mRNA|length=666bp
GGGACAATGATGATGGAGGGGTCGATGGAGGGGCTGTTGAGTACTGTAAG
ACGAGTGCACGAGAAGGAGATGGAGAGGAGCCGGAGAGCGAGGGTGTTAG
CGGTGGAGGAGCTAGTGGAGTTGAGTCAAGAGGATCTGTTGAAGTTGCAG
GAAAATCTGGCGTGTGCCTTGACAAAGAAATGCGAGATCGATAGGTATTG
CTCGATTTGCTTGGAGAGGCAGAAAGATCACGTGTGCGTCCCCTGTGGGC
ATCGGTACTGCGGTTCGTGCATAGCCCAGGTGGAGCGCTGTGCGGAGTGT
AGGGAGAAAATCACACAGAAGCTGAAGTGTTTCTAGGGCGAGGAGGGGAG
TTTTGGAGGGAAGGAGCGAGGGAAGGAGGGTTGTGCACATAAATTTACAT
CCAGGAAGAGACGGGAGGAGTGAGGCATGGGGAGAGACACAGGCAGGCAG
AAAAGGAAAGGATTATTTGTGAATACAGTGCTCGCCCTCCTTATCCTCTA
TTCTGTCTTCGATCATTTTTCCTGGCACGTACAAAGGATGCGAGCGTTGA
GAGAGATGGAGAGGGATGTGGAAAGACACGGACACGCACGAGTTGTTTCA
GAACAACCAATCAGTCGTCGTAAGCAGATAGCAGCAGTAGTATTAGCAGC
AGCAGCAGCAGCAGCA
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protein sequence of jgi.p|Nanoce1779_2|592630

>mRNA_5472-protein ID=mRNA_5472-protein|Name=jgi.p|Nanoce1779_2|592630|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MMMEGSMEGLLSTVRRVHEKEMERSRRARVLAVEELVELSQEDLLKLQEN
LACALTKKCEIDRYCSICLERQKDHVCVPCGHRYCGSCIAQVERCAECRE
KITQKLKCF*
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mRNA from alignment at scaffold_13:493938..494603+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5472 ID=mRNA_5472|Name=jgi.p|Nanoce1779_2|592630|organism=Nannochloropsis oceanica|type=mRNA|length=666bp|location=Sequence derived from alignment at scaffold_13:493938..494603+ (Nannochloropsis oceanica)
GGGACAATGATGATGGAGGGGTCGATGGAGGGGCTGTTGAGTACTGTAAG
ACGAGTGCACGAGAAGGAGATGGAGAGGAGCCGGAGAGCGAGGGTGTTAG
CGGTGGAGGAGCTAGTGGAGTTGAGTCAAGAGGATCTGTTGAAGTTGCAG
GAAAATCTGGCGTGTGCCTTGACAAAGAAATGCGAGATCGATAGGTATTG
CTCGATTTGCTTGGAGAGGCAGAAAGATCACGTGTGCGTCCCCTGTGGGC
ATCGGTACTGCGGTTCGTGCATAGCCCAGGTGGAGCGCTGTGCGGAGTGT
AGGGAGAAAATCACACAGAAGCTGAAGTGTTTCTAGGGCGAGGAGGGGAG
TTTTGGAGGGAAGGAGCGAGGGAAGGAGGGTTGTGCACATAAATTTACAT
CCAGGAAGAGACGGGAGGAGTGAGGCATGGGGAGAGACACAGGCAGGCAG
AAAAGGAAAGGATTATTTGTGAATACAGTGCTCGCCCTCCTTATCCTCTA
TTCTGTCTTCGATCATTTTTCCTGGCACGTACAAAGGATGCGAGCGTTGA
GAGAGATGGAGAGGGATGTGGAAAGACACGGACACGCACGAGTTGTTTCA
GAACAACCAATCAGTCGTCGTAAGCAGATAGCAGCAGTAGTATTAGCAGC
AGCAGCAGCAGCAGCA
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Coding sequence (CDS) from alignment at scaffold_13:493938..494603+

>mRNA_5472 ID=mRNA_5472|Name=jgi.p|Nanoce1779_2|592630|organism=Nannochloropsis oceanica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_13:493938..494603+ (Nannochloropsis oceanica)
ATGATGATGGAGGGGTCGATGGAGGGGCTGTTGAGTACTGTAAGACGAGT
GCACGAGAAGGAGATGGAGAGGAGCCGGAGAGCGAGGGTGTTAGCGGTGG
AGGAGCTAGTGGAGTTGAGTCAAGAGGATCTGTTGAAGTTGCAGGAAAAT
CTGGCGTGTGCCTTGACAAAGAAATGCGAGATCGATAGGTATTGCTCGAT
TTGCTTGGAGAGGCAGAAAGATCACGTGTGCGTCCCCTGTGGGCATCGGT
ACTGCGGTTCGTGCATAGCCCAGGTGGAGCGCTGTGCGGAGTGTAGGGAG
AAAATCACACAGAAGCTGAAGTGTTTCTAG
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Synonyms
Publications