jgi.p|Nanoce1779_2|592624, mRNA_5471 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592624
Unique Name	mRNA_5471
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1493
Alignment location	scaffold_13:490573..492490 -

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Properties


Property Name	Value
TranscriptId	592710
Track	FilteredModels2
ProteinId	592624

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:490573..492490 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592624	gene_5471	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592624	mRNA_5471-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5471	CDS_5471	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:490573..492490-
coding sequence from alignment at scaffold_13:490573..492490-

mRNA sequence

>mRNA_5471 ID=mRNA_5471|Name=jgi.p|Nanoce1779_2|592624|organism=Nannochloropsis oceanica|type=mRNA|length=1493bp
CAGAGAAGTCCGTGGATACAAAATCACGAGAAGCGCGCCGACAACCTCCC
CCCTACTCCTTGTCTCCTTGCCTGCCGAAAGTATGGGCAATACCAACAGC
AACGCGCATGTATCCTTGGCAGTGCAGACGGATAAGATGATATATATGGC
CGGGGAAACAGTCAAGGGCTCTGTGTACGTCATGGTCACGGCAGAAACAG
AGGCCACCGGGGTCTTCCTCCGCGTCAAGGGCCTCGAGCGGGTGAACTTT
ACCGAACGCCGCACAGGGCGCGATGCCGAAGACCTGGATCGGACGCTGTC
CGACGAAGTCTCCTTTTTCAACGTCACCATGCCCTTACTTACCGCTCAAG
CCGGGTCGCTCCAACCGGGTCAGTACCAGATCCCTTTCATCTTTTCCCTC
CCTGCTTCCTTGCCGGGGACCTACCCGGAAGAAGAAGGGATGAGAGGCGG
TGAGACGTATCGATGCTCAATCGATTATGAAGTGCTTGCATATGTGGAAG
TACCGGGGGTGTTCACAAACAATATTCGGCACAGGCAGCTCTTAGCTGTC
ACTGCTAATTTCGACCCGAAGGCCATCCACGCCGAGACAGTCGTAAAGAA
CAAGAAAGTCTGTTTTGTGTGTTGTATCCCCCGGGGGGAGATTTGGATGA
GGGCCTCAATGGACAAGAGCCATTACATGCCAGGCGAGACGGCGATGATT
GTGGTCGAGATGAATAATGGCTCGAGGGCGACGATTCGTCATGTGAGCAT
GCGGTTGGTGCGGCAGCTTCGCTTGGGTACGCGCAGTCAAGGCTGGCTTT
TCTACCAGTCCGATGTCCTGACGTCCCTCGAGCTCCCAGGTCTACTCCCC
GGGCAATCGTTCATGGACGCCGCAGGACGCACCGTGCCTTTCCTTCTCTC
TTCCACCAAGGACGGCAAGCCCCTCCCCGCAGAAGTAAAAGGATCCATAG
TAGAGTGTACATACGCTGTTAAAATCTTTGTCAAAATCGACTGGACTCCC
TCCATTGGCATAGAGGTTCCTATCCATATCTACCACTCGCCCGACCTTTT
CCCCTCGTCCTCCTTGCCCGAAGCATATCATCGTGAGCCGTTGGCGTTGC
CCCCAACGGCGAGCGCCGTCGAATGGAATCCGACGATCGAGCAAGAAGTT
GACATTCCCATGGCCTCTGCAGTGGCAATGGAGATGAATGGAAAAGGAGG
GGCGCCTGGAGTAGAATCCCCTATAGGGGGGGTGATGCCCTCGGCACCGT
CAATGCGCTGGTTTGGGAGGGGTAGGGAATTATAGAAGAGGGACAGGAGT
TAGGGATAGAGGGAGGGACAGGTGCATGCCGAAATTGTTGGTCAGTGAAA
AGTATGACCACAGGCATGGCTGTATAAATTTAACAATGAATAAATAATCA
CGAAGGCGGGGACGACGAGACTGCGGGTGGGAAAACAAAAATTAAAGCGT
GTAAAACGTTTACAAAAAAGAATACAATGATCAGTCGTCGAAG

protein sequence of jgi.p|Nanoce1779_2|592624

>mRNA_5471-protein ID=mRNA_5471-protein|Name=jgi.p|Nanoce1779_2|592624|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MGNTNSNAHVSLAVQTDKMIYMAGETVKGSVYVMVTAETEATGVFLRVKG
LERVNFTERRTGRDAEDLDRTLSDEVSFFNVTMPLLTAQAGSLQPGQYQI
PFIFSLPASLPGTYPEEEGMRGGETYRCSIDYEVLAYVEVPGVFTNNIRH
RQLLAVTANFDPKAIHAETVVKNKKVCFVCCIPRGEIWMRASMDKSHYMP
GETAMIVVEMNNGSRATIRHVSMRLVRQLRLGTRSQGWLFYQSDVLTSLE
LPGLLPGQSFMDAAGRTVPFLLSSTKDGKPLPAEVKGSIVECTYAVKIFV
KIDWTPSIGIEVPIHIYHSPDLFPSSSLPEAYHREPLALPPTASAVEWNP
TIEQEVDIPMASAVAMEMNGKGGAPGVESPIGGVMPSAPSMRWFGRGREL
*

mRNA from alignment at scaffold_13:490573..492490-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5471 ID=mRNA_5471|Name=jgi.p|Nanoce1779_2|592624|organism=Nannochloropsis oceanica|type=mRNA|length=1918bp|location=Sequence derived from alignment at scaffold_13:490573..492490- (Nannochloropsis oceanica)
CAGAGAAGTCCGTGGATACAAAATCACGAGAAGCGCGCCGACAACCTCCC
CCCTACTCCTTGTCTCCTTGCCTGCCGAAAGTATGGGCAATACCAACAGC
AACGCGCATGTATCCTTGGCAGTGCAGACGGATAAGATGATATATATGGC
CGGGGAAACAGTCAAGGGCTCTGTGTACGTCATGGTCACGGCAGAAACAG
AGGTAAATATACAGGGCCCATTTCTTGCTCATGCCTCCAGCAATTCCATT
CCAAAAAGCTCCCTTGACGTATCTATGCGAATTTTTAGATAAATGTTCAA
TTATGATTTCGATGCGGGGATGGCTCTGGTGAACACGGTCTACTTCACAC
AAATGCCTCCGCGCCTGTTCACCCTCCAACACTCCCCCTCTCATCCTATG
TTCGAGCGGCATCTGTGTAAGACATTCTCCACCACCATTCGCACCACTCG
CACTCTCACAACGACTCCTATCCTTTCCCCCTCCCTCTATCGCAAGGCCA
CCGGGGTCTTCCTCCGCGTCAAGGGCCTCGAGCGGGTGAACTTTACCGAA
CGCCGCACAGGGCGCGATGCCGAAGACCTGGATCGGACGCTGTCCGACGA
AGTCTCCTTTTTCAACGTCACCATGCCCTTACTTACCGCTCAAGCCGGGT
CGCTCCAACCGGGTCAGTACCAGATCCCTTTCATCTTTTCCCTCCCTGCT
TCCTTGCCGGGGACCTACCCGGAAGAAGAAGGGATGAGAGGCGGTGAGAC
GTATCGATGCTCAATCGATTATGAAGTGCTTGCATATGTGGAAGTACCGG
GGGTGTTCACAAACAATATTCGGCACAGGCAGCTCTTAGCTGTCACTGCT
AATTTCGACCCGAAGGCCATCCACGCCGAGACAGTCGTAAAGAACAAGAA
AGTCTGTTTTGTGTGTTGTATCCCCCGGGGGGAGATTTGGATGAGGGCCT
CAATGGACAAGAGCCATTACATGCCAGGCGAGACGGCGATGATTGTGGTC
GAGATGAATAATGGCTCGAGGGCGACGATTCGTCATGTGAGCATGCGGTT
GGTGCGGCAGCTTCGCTTGGGTACGCGCAGTCAAGGTAAGGAGCTGTCCC
TCCCCCTCTCCCTCCCTGCCTGCCTGTGGTCGTATCTGTATTACCACCTC
TCCCTCCCGCGGTCATTCAATCGCTCACATCCTTTATGTATATGATATCA
CAATTTCAAACCACAGGCTGGCTTTTCTACCAGTCCGATGTCCTGACGTC
CCTCGAGCTCCCAGGTCTACTCCCCGGGCAATCGTTCATGGACGCCGCAG
GACGCACCGTGCCTTTCCTTCTCTCTTCCACCAAGGACGGCAAGCCCCTC
CCCGCAGAAGTAAAAGGATCCATAGTAGAGTGTACATACGCTGTTAAAAT
CTTTGTCAAAATCGACTGGACTCCCTCCATTGGCATAGAGGTTCCTATCC
ATATCTACCACTCGCCCGACCTTTTCCCCTCGTCCTCCTTGCCCGAAGCA
TATCATCGTGAGCCGTTGGCGTTGCCCCCAACGGCGAGCGCCGTCGAATG
GAATCCGACGATCGAGCAAGAAGTTGACATTCCCATGGCCTCTGCAGTGG
CAATGGAGATGAATGGAAAAGGAGGGGCGCCTGGAGTAGAATCCCCTATA
GGGGGGGTGATGCCCTCGGCACCGTCAATGCGCTGGTTTGGGAGGGGTAG
GGAATTATAGAAGAGGGACAGGAGTTAGGGATAGAGGGAGGGACAGGTGC
ATGCCGAAATTGTTGGTCAGTGAAAAGTATGACCACAGGCATGGCTGTAT
AAATTTAACAATGAATAAATAATCACGAAGGCGGGGACGACGAGACTGCG
GGTGGGAAAACAAAAATTAAAGCGTGTAAAACGTTTACAAAAAAGAATAC
AATGATCAGTCGTCGAAG

Coding sequence (CDS) from alignment at scaffold_13:490573..492490-

>mRNA_5471 ID=mRNA_5471|Name=jgi.p|Nanoce1779_2|592624|organism=Nannochloropsis oceanica|type=CDS|length=3609bp|location=Sequence derived from alignment at scaffold_13:490573..492490- (Nannochloropsis oceanica)
GCTGGCTTTTCTACCAGTCCGATGTCCTGACGTCCCTCGAGCTCCCAGGT
CTACTCCCCGGGCAATCGTTCATGGACGCCGCAGGACGCACCGTGCCTTT
CCTTCTCTCTTCCACCAAGGACGGCAAGCCCCTCCCCGCAGAAGTAAAAG
GATCCATAGTAGAGTGTACATACGCTGTTAAAATCTTTGTCAAAATCGAC
TGGACTCCCTCCATTGGCATAGAGGTTCCTATCCATATCTACCACTCGCC
CGACCTTTTCCCCTCGTCCTCCTTGCCCGAAGCATATCATCGTGAGCCGT
TGGCGTTGCCCCCAACGGCGAGCGCCGTCGAATGGAATCCGACGATCGAG
CAAGAAGTTGACATTCCCATGGCCTCTGCAGTGGCAATGGAGATGAATGG
AAAAGGAGGGGCGCCTGGAGTAGAATCCCCTATAGGGGGGGTGATGCCCT
CGGCACCGTCAATGCGCTGGTTTGGGAGGGGTAGGGAATTATAGGCCACC
GGGGTCTTCCTCCGCGTCAAGGGCCTCGAGCGGGTGAACTTTACCGAACG
CCGCACAGGGCGCGATGCCGAAGACCTGGATCGGACGCTGTCCGACGAAG
TCTCCTTTTTCAACGTCACCATGCCCTTACTTACCGCTCAAGCCGGGTCG
CTCCAACCGGGTCAGTACCAGATCCCTTTCATCTTTTCCCTCCCTGCTTC
CTTGCCGGGGACCTACCCGGAAGAAGAAGGGATGAGAGGCGGTGAGACGT
ATCGATGCTCAATCGATTATGAAGTGCTTGCATATGTGGAAGTACCGGGG
GTGTTCACAAACAATATTCGGCACAGGCAGCTCTTAGCTGTCACTGCTAA
TTTCGACCCGAAGGCCATCCACGCCGAGACAGTCGTAAAGAACAAGAAAG
TCTGTTTTGTGTGTTGTATCCCCCGGGGGGAGATTTGGATGAGGGCCTCA
ATGGACAAGAGCCATTACATGCCAGGCGAGACGGCGATGATTGTGGTCGA
GATGAATAATGGCTCGAGGGCGACGATTCGTCATGTGAGCATGCGGTTGG
TGCGGCAGCTTCGCTTGGGTACGCGCAGTCAAGATGGGCAATACCAACAG
CAACGCGCATGTATCCTTGGCAGTGCAGACGGATAAGATGATATATATGG
CCGGGGAAACAGTCAAGGGCTCTGTGTACGTCATGGTCACGGCAGAAACA
GAGGCTGGCTTTTCTACCAGTCCGATGTCCTGACGTCCCTCGAGCTCCCA
GGTCTACTCCCCGGGCAATCGTTCATGGACGCCGCAGGACGCACCGTGCC
TTTCCTTCTCTCTTCCACCAAGGACGGCAAGCCCCTCCCCGCAGAAGTAA
AAGGATCCATAGTAGAGTGTACATACGCTGTTAAAATCTTTGTCAAAATC
GACTGGACTCCCTCCATTGGCATAGAGGTTCCTATCCATATCTACCACTC
GCCCGACCTTTTCCCCTCGTCCTCCTTGCCCGAAGCATATCATCGTGAGC
CGTTGGCGTTGCCCCCAACGGCGAGCGCCGTCGAATGGAATCCGACGATC
GAGCAAGAAGTTGACATTCCCATGGCCTCTGCAGTGGCAATGGAGATGAA
TGGAAAAGGAGGGGCGCCTGGAGTAGAATCCCCTATAGGGGGGGTGATGC
CCTCGGCACCGTCAATGCGCTGGTTTGGGAGGGGTAGGGAATTATAGGCC
ACCGGGGTCTTCCTCCGCGTCAAGGGCCTCGAGCGGGTGAACTTTACCGA
ACGCCGCACAGGGCGCGATGCCGAAGACCTGGATCGGACGCTGTCCGACG
AAGTCTCCTTTTTCAACGTCACCATGCCCTTACTTACCGCTCAAGCCGGG
TCGCTCCAACCGGGTCAGTACCAGATCCCTTTCATCTTTTCCCTCCCTGC
TTCCTTGCCGGGGACCTACCCGGAAGAAGAAGGGATGAGAGGCGGTGAGA
CGTATCGATGCTCAATCGATTATGAAGTGCTTGCATATGTGGAAGTACCG
GGGGTGTTCACAAACAATATTCGGCACAGGCAGCTCTTAGCTGTCACTGC
TAATTTCGACCCGAAGGCCATCCACGCCGAGACAGTCGTAAAGAACAAGA
AAGTCTGTTTTGTGTGTTGTATCCCCCGGGGGGAGATTTGGATGAGGGCC
TCAATGGACAAGAGCCATTACATGCCAGGCGAGACGGCGATGATTGTGGT
CGAGATGAATAATGGCTCGAGGGCGACGATTCGTCATGTGAGCATGCGGT
TGGTGCGGCAGCTTCGCTTGGGTACGCGCAGTCAAGATGGGCAATACCAA
CAGCAACGCGCATGTATCCTTGGCAGTGCAGACGGATAAGATGATATATA
TGGCCGGGGAAACAGTCAAGGGCTCTGTGTACGTCATGGTCACGGCAGAA
ACAGAGGCTGGCTTTTCTACCAGTCCGATGTCCTGACGTCCCTCGAGCTC
CCAGGTCTACTCCCCGGGCAATCGTTCATGGACGCCGCAGGACGCACCGT
GCCTTTCCTTCTCTCTTCCACCAAGGACGGCAAGCCCCTCCCCGCAGAAG
TAAAAGGATCCATAGTAGAGTGTACATACGCTGTTAAAATCTTTGTCAAA
ATCGACTGGACTCCCTCCATTGGCATAGAGGTTCCTATCCATATCTACCA
CTCGCCCGACCTTTTCCCCTCGTCCTCCTTGCCCGAAGCATATCATCGTG
AGCCGTTGGCGTTGCCCCCAACGGCGAGCGCCGTCGAATGGAATCCGACG
ATCGAGCAAGAAGTTGACATTCCCATGGCCTCTGCAGTGGCAATGGAGAT
GAATGGAAAAGGAGGGGCGCCTGGAGTAGAATCCCCTATAGGGGGGGTGA
TGCCCTCGGCACCGTCAATGCGCTGGTTTGGGAGGGGTAGGGAATTATAG
GCCACCGGGGTCTTCCTCCGCGTCAAGGGCCTCGAGCGGGTGAACTTTAC
CGAACGCCGCACAGGGCGCGATGCCGAAGACCTGGATCGGACGCTGTCCG
ACGAAGTCTCCTTTTTCAACGTCACCATGCCCTTACTTACCGCTCAAGCC
GGGTCGCTCCAACCGGGTCAGTACCAGATCCCTTTCATCTTTTCCCTCCC
TGCTTCCTTGCCGGGGACCTACCCGGAAGAAGAAGGGATGAGAGGCGGTG
AGACGTATCGATGCTCAATCGATTATGAAGTGCTTGCATATGTGGAAGTA
CCGGGGGTGTTCACAAACAATATTCGGCACAGGCAGCTCTTAGCTGTCAC
TGCTAATTTCGACCCGAAGGCCATCCACGCCGAGACAGTCGTAAAGAACA
AGAAAGTCTGTTTTGTGTGTTGTATCCCCCGGGGGGAGATTTGGATGAGG
GCCTCAATGGACAAGAGCCATTACATGCCAGGCGAGACGGCGATGATTGT
GGTCGAGATGAATAATGGCTCGAGGGCGACGATTCGTCATGTGAGCATGC
GGTTGGTGCGGCAGCTTCGCTTGGGTACGCGCAGTCAAGATGGGCAATAC
CAACAGCAACGCGCATGTATCCTTGGCAGTGCAGACGGATAAGATGATAT
ATATGGCCGGGGAAACAGTCAAGGGCTCTGTGTACGTCATGGTCACGGCA
GAAACAGAG

Synonyms

Publications