jgi.p|Nanoce1779_2|592619, mRNA_5469 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592619
Unique NamemRNA_5469
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length822
Alignment locationscaffold_13:486389..487652 +

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Properties
Property NameValue
TranscriptId592705
TrackFilteredModels2
ProteinId592619
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:486389..487652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592619gene_5469Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592619mRNA_5469-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5469CDS_5469Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5469 ID=mRNA_5469|Name=jgi.p|Nanoce1779_2|592619|organism=Nannochloropsis oceanica|type=mRNA|length=822bp
AAACAACAGGCGCTTGTCTACCGAAAAGCCCTCACTCATTCATCATGACG
TGCTTTTTCAAGGGACTCGGCTTCGGCCTGACCCTCGCCCCCGTGATTCT
CATGATCATGTCCCTGCTGAGCCAAGATTGGACGTTGAACACGACGAGCC
TGATCGATATTAGCCCCAAAGCCGAGATCTACGAGGACACGATCGACTTC
CGTATGGGCCCCTTTAAAACATTCATGGAGGCCGTGCAAGAAGAGACTGT
GGTTTTCAGCTACACCTCATACTCGGACTGGTGCTCCCCCTCGGCCTCGT
CTTTCGACAACCCCTCCGCGCACCACCTCTGTCGCCTGCTGCACAGCGTG
CGGGCCACGGGGGTTGTAACCGCCATCCTTGGGGGGGTCACTTTCTTGCT
ATACTGTATCCTTGCCTTCCGATCTCTCAAGGGGCAGTATATTGCCAAGA
CTGCGCGTGTCAGCATGGTTTTACACATCGTCCAAGCGGGGTGTGCCTTC
GCTACCGTGGGGTTGTGGATGGCGTTAACGAAAGCCTACCACTCCTCCCT
CACCTCGGCCTTGGACCCGGAGTTTGCGAGTTTCCGCTTGCCGTATGGCA
GGTCATTCTATCGTGTGGTGGTCGTGGGGATCCTGGCGTTGGTATCAGCT
GCGGCATTGCACATCATGGCGGCCAAGAGCGTCGGTGCAATTGAGAAGCA
AGCAACGATTGAGCGGAAGAGGAGTGAGTTTGAGTTGAGGGAGGCGGCGG
AGTCGGCTCGGAGACAGGCAGAGCAGGAGCTAAGAGCTGAAAATATGATT
TAGGTTTAGAAGCGAGGTGGGA
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protein sequence of jgi.p|Nanoce1779_2|592619

>mRNA_5469-protein ID=mRNA_5469-protein|Name=jgi.p|Nanoce1779_2|592619|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MTCFFKGLGFGLTLAPVILMIMSLLSQDWTLNTTSLIDISPKAEIYEDTI
DFRMGPFKTFMEAVQEETVVFSYTSYSDWCSPSASSFDNPSAHHLCRLLH
SVRATGVVTAILGGVTFLLYCILAFRSLKGQYIAKTARVSMVLHIVQAGC
AFATVGLWMALTKAYHSSLTSALDPEFASFRLPYGRSFYRVVVVGILALV
SAAALHIMAAKSVGAIEKQATIERKRSEFELREAAESARRQAEQELRAEN
MI*
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mRNA from alignment at scaffold_13:486389..487652+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5469 ID=mRNA_5469|Name=jgi.p|Nanoce1779_2|592619|organism=Nannochloropsis oceanica|type=mRNA|length=1264bp|location=Sequence derived from alignment at scaffold_13:486389..487652+ (Nannochloropsis oceanica)
AAACAACAGGCGCTTGTCTACCGAAAAGCCCTCACTCATTCATCATGACG
TGCTTTTTCAAGGGACTCGGTACGTGCACTGAGAGTAGAGCATTATAGAG
TGGGAGAGAGAATTTATATGGAGTCGGTACTCGTACTTGTAAATGTGCCA
TATCAGTATGCGCATGAATAAGTCGTCATGTACATGTGGAGCGGTGTCTC
ATAACATTTTCCCCATTCAAGCTTTATGCTTATCTATCTCCGCCCCTCCT
CTAACCTCCTCATTTCCCGAATCACGCAGGCTTCGGCCTGACCCTCGCCC
CCGTGATTCTCATGATCATGTCCCTGCTGAGCCAAGGTATGTCTTAATTG
GTTGCAACTTTTTTTCTGTTAAAGCCATGCTGTTGGATGATATCCCTGAC
CTTGGTCTGTCCCCTTTCCAACTCCTGACCACTTTACCATCCATGGCGTA
TATGGCACTCCCCCCCCCCCCGGTGTAGCTCCCAACTTTTTCTGCTTTCC
ACTCTTTTTGATGTTTATCGTCTCTCCTGTCACTCCACTTCTTTCCTTCC
TCTCTCCTTCCTTTCTAGATTGGACGTTGAACACGACGAGCCTGATCGAT
ATTAGCCCCAAAGCCGAGATCTACGAGGACACGATCGACTTCCGTATGGG
CCCCTTTAAAACATTCATGGAGGCCGTGCAAGAAGAGACTGTGGTTTTCA
GCTACACCTCATACTCGGACTGGTGCTCCCCCTCGGCCTCGTCTTTCGAC
AACCCCTCCGCGCACCACCTCTGTCGCCTGCTGCACAGCGTGCGGGCCAC
GGGGGTTGTAACCGCCATCCTTGGGGGGGTCACTTTCTTGCTATACTGTA
TCCTTGCCTTCCGATCTCTCAAGGGGCAGTATATTGCCAAGACTGCGCGT
GTCAGCATGGTTTTACACATCGTCCAAGCGGGGTGTGCCTTCGCTACCGT
GGGGTTGTGGATGGCGTTAACGAAAGCCTACCACTCCTCCCTCACCTCGG
CCTTGGACCCGGAGTTTGCGAGTTTCCGCTTGCCGTATGGCAGGTCATTC
TATCGTGTGGTGGTCGTGGGGATCCTGGCGTTGGTATCAGCTGCGGCATT
GCACATCATGGCGGCCAAGAGCGTCGGTGCAATTGAGAAGCAAGCAACGA
TTGAGCGGAAGAGGAGTGAGTTTGAGTTGAGGGAGGCGGCGGAGTCGGCT
CGGAGACAGGCAGAGCAGGAGCTAAGAGCTGAAAATATGATTTAGGTTTA
GAAGCGAGGTGGGA
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Coding sequence (CDS) from alignment at scaffold_13:486389..487652+

>mRNA_5469 ID=mRNA_5469|Name=jgi.p|Nanoce1779_2|592619|organism=Nannochloropsis oceanica|type=CDS|length=2277bp|location=Sequence derived from alignment at scaffold_13:486389..487652+ (Nannochloropsis oceanica)
ATGACGTGCTTTTTCAAGGGACTCGGCTTCGGCCTGACCCTCGCCCCCGT
GATTCTCATGATCATGTCCCTGCTGAGCCAAGATTGGACGTTGAACACGA
CGAGCCTGATCGATATTAGCCCCAAAGCCGAGATCTACGAGGACACGATC
GACTTCCGTATGGGCCCCTTTAAAACATTCATGGAGGCCGTGCAAGAAGA
GACTGTGGTTTTCAGCTACACCTCATACTCGGACTGGTGCTCCCCCTCGG
CCTCGTCTTTCGACAACCCCTCCGCGCACCACCTCTGTCGCCTGCTGCAC
AGCGTGCGGGCCACGGGGGTTGTAACCGCCATCCTTGGGGGGGTCACTTT
CTTGCTATACTGTATCCTTGCCTTCCGATCTCTCAAGGGGCAGTATATTG
CCAAGACTGCGCGTGTCAGCATGGTTTTACACATCGTCCAAGCGGGGTGT
GCCTTCGCTACCGTGGGGTTGTGGATGGCGTTAACGAAAGCCTACCACTC
CTCCCTCACCTCGGCCTTGGACCCGGAGTTTGCGAGTTTCCGCTTGCCGT
ATGGCAGGTCATTCTATCGTGTGGTGGTCGTGGGGATCCTGGCGTTGGTA
TCAGCTGCGGCATTGCACATCATGGCGGCCAAGAGCGTCGGTGCAATTGA
GAAGCAAGCAACGATTGAGCGGAAGAGGAGTGAGTTTGAGTTGAGGGAGG
CGGCGGAGTCGGCTCGGAGACAGGCAGAGCAGGAGCTAAGAGCTGAAAAT
ATGATTTAGATGACGTGCTTTTTCAAGGGACTCGGCTTCGGCCTGACCCT
CGCCCCCGTGATTCTCATGATCATGTCCCTGCTGAGCCAAGATTGGACGT
TGAACACGACGAGCCTGATCGATATTAGCCCCAAAGCCGAGATCTACGAG
GACACGATCGACTTCCGTATGGGCCCCTTTAAAACATTCATGGAGGCCGT
GCAAGAAGAGACTGTGGTTTTCAGCTACACCTCATACTCGGACTGGTGCT
CCCCCTCGGCCTCGTCTTTCGACAACCCCTCCGCGCACCACCTCTGTCGC
CTGCTGCACAGCGTGCGGGCCACGGGGGTTGTAACCGCCATCCTTGGGGG
GGTCACTTTCTTGCTATACTGTATCCTTGCCTTCCGATCTCTCAAGGGGC
AGTATATTGCCAAGACTGCGCGTGTCAGCATGGTTTTACACATCGTCCAA
GCGGGGTGTGCCTTCGCTACCGTGGGGTTGTGGATGGCGTTAACGAAAGC
CTACCACTCCTCCCTCACCTCGGCCTTGGACCCGGAGTTTGCGAGTTTCC
GCTTGCCGTATGGCAGGTCATTCTATCGTGTGGTGGTCGTGGGGATCCTG
GCGTTGGTATCAGCTGCGGCATTGCACATCATGGCGGCCAAGAGCGTCGG
TGCAATTGAGAAGCAAGCAACGATTGAGCGGAAGAGGAGTGAGTTTGAGT
TGAGGGAGGCGGCGGAGTCGGCTCGGAGACAGGCAGAGCAGGAGCTAAGA
GCTGAAAATATGATTTAGATGACGTGCTTTTTCAAGGGACTCGGCTTCGG
CCTGACCCTCGCCCCCGTGATTCTCATGATCATGTCCCTGCTGAGCCAAG
ATTGGACGTTGAACACGACGAGCCTGATCGATATTAGCCCCAAAGCCGAG
ATCTACGAGGACACGATCGACTTCCGTATGGGCCCCTTTAAAACATTCAT
GGAGGCCGTGCAAGAAGAGACTGTGGTTTTCAGCTACACCTCATACTCGG
ACTGGTGCTCCCCCTCGGCCTCGTCTTTCGACAACCCCTCCGCGCACCAC
CTCTGTCGCCTGCTGCACAGCGTGCGGGCCACGGGGGTTGTAACCGCCAT
CCTTGGGGGGGTCACTTTCTTGCTATACTGTATCCTTGCCTTCCGATCTC
TCAAGGGGCAGTATATTGCCAAGACTGCGCGTGTCAGCATGGTTTTACAC
ATCGTCCAAGCGGGGTGTGCCTTCGCTACCGTGGGGTTGTGGATGGCGTT
AACGAAAGCCTACCACTCCTCCCTCACCTCGGCCTTGGACCCGGAGTTTG
CGAGTTTCCGCTTGCCGTATGGCAGGTCATTCTATCGTGTGGTGGTCGTG
GGGATCCTGGCGTTGGTATCAGCTGCGGCATTGCACATCATGGCGGCCAA
GAGCGTCGGTGCAATTGAGAAGCAAGCAACGATTGAGCGGAAGAGGAGTG
AGTTTGAGTTGAGGGAGGCGGCGGAGTCGGCTCGGAGACAGGCAGAGCAG
GAGCTAAGAGCTGAAAATATGATTTAG
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Synonyms
Publications