jgi.p|Nanoce1779_2|566657, mRNA_5466 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566657
Unique NamemRNA_5466
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length327
Alignment locationscaffold_13:483594..483920 +

Link to JBrowse

Properties
Property NameValue
TranscriptId566743
TrackFilteredModels2
ProteinId566657
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:483594..483920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566657gene_5466Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566657mRNA_5466-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5466CDS_5466Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5466 ID=mRNA_5466|Name=jgi.p|Nanoce1779_2|566657|organism=Nannochloropsis oceanica|type=mRNA|length=327bp
ATGGGGGCGACGACGTATATTGTGACGGGAGCGGGTGGGAACAGAGAGGG
CAATACGCCGTTCGAGAGCGAGCAGCCCGAGAGGGTGGCGAGTCGAGCGG
AGATTTGGGGTTACTCTATCTTGGAGGTGCACAACGCCACACACTTGTAT
TATGAGCAGCGGGGATGTGATGTAGAGCCCAGGGAGGGAGGGAGGGAGAG
GGATGAATTTGTGGATGGGGCGTGGCTGGTGCAGCATCGTCATGGGTCCT
TTGAGAGGAGGGTGGAGGAGGAGGGGGAGGAAGGGGATGAGAGAGGATGG
GAGGGAGGGAGGATCGCGGTAGCATAA
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protein sequence of jgi.p|Nanoce1779_2|566657

>mRNA_5466-protein ID=mRNA_5466-protein|Name=jgi.p|Nanoce1779_2|566657|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MGATTYIVTGAGGNREGNTPFESEQPERVASRAEIWGYSILEVHNATHLY
YEQRGCDVEPREGGRERDEFVDGAWLVQHRHGSFERRVEEEGEEGDERGW
EGGRIAVA*
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mRNA from alignment at scaffold_13:483594..483920+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5466 ID=mRNA_5466|Name=jgi.p|Nanoce1779_2|566657|organism=Nannochloropsis oceanica|type=mRNA|length=327bp|location=Sequence derived from alignment at scaffold_13:483594..483920+ (Nannochloropsis oceanica)
ATGGGGGCGACGACGTATATTGTGACGGGAGCGGGTGGGAACAGAGAGGG
CAATACGCCGTTCGAGAGCGAGCAGCCCGAGAGGGTGGCGAGTCGAGCGG
AGATTTGGGGTTACTCTATCTTGGAGGTGCACAACGCCACACACTTGTAT
TATGAGCAGCGGGGATGTGATGTAGAGCCCAGGGAGGGAGGGAGGGAGAG
GGATGAATTTGTGGATGGGGCGTGGCTGGTGCAGCATCGTCATGGGTCCT
TTGAGAGGAGGGTGGAGGAGGAGGGGGAGGAAGGGGATGAGAGAGGATGG
GAGGGAGGGAGGATCGCGGTAGCATAA
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Coding sequence (CDS) from alignment at scaffold_13:483594..483920+

>mRNA_5466 ID=mRNA_5466|Name=jgi.p|Nanoce1779_2|566657|organism=Nannochloropsis oceanica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_13:483594..483920+ (Nannochloropsis oceanica)
ATGGGGGCGACGACGTATATTGTGACGGGAGCGGGTGGGAACAGAGAGGG
CAATACGCCGTTCGAGAGCGAGCAGCCCGAGAGGGTGGCGAGTCGAGCGG
AGATTTGGGGTTACTCTATCTTGGAGGTGCACAACGCCACACACTTGTAT
TATGAGCAGCGGGGATGTGATGTAGAGCCCAGGGAGGGAGGGAGGGAGAG
GGATGAATTTGTGGATGGGGCGTGGCTGGTGCAGCATCGTCATGGGTCCT
TTGAGAGGAGGGTGGAGGAGGAGGGGGAGGAAGGGGATGAGAGAGGATGG
GAGGGAGGGAGGATCGCGGTAGCATAA
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Synonyms
Publications