jgi.p|Nanoce1779_2|631077, mRNA_5463 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|631077
Unique NamemRNA_5463
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1605
Alignment locationscaffold_13:476755..478359 -

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Properties
Property NameValue
TranscriptId631163
TrackFilteredModels2
ProteinId631077
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:476755..478359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631077gene_5463Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631077mRNA_5463-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5463CDS_5463Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5463 ID=mRNA_5463|Name=jgi.p|Nanoce1779_2|631077|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp
CTTCTTGTACATTTTCGCATCGCAGTGCACTCGAAAATGAAGCTAATTAA
TGCACTCATTACTTCACCCTTACTGTCCGATAATAGGTATCGGTCAGCTG
GCCCGGGCGAGGCTCCGCCTGAATCAACTAGACGCTCGATCCCACAAACC
TCCGCGTAGTCGCAGGAGGTCAGGTCCCCGCTTACCTTACACACCAAATG
CTGCGCCGCGCCGCCCAGACCCTTGGTCCCGAGACGGCGCAACTGGTAAC
TTGGGTGGAGAAGCAGGCACAGACAGCAGGAAGGATATGCGCACTCGGTC
CAAGACCCCCTTTACCCATCCTCACACCTTCAAATGGCTTGGGCCTCGCG
GCCCTCTCCCCTCAAGGCTACGCAGCAGGCGATGTAGTCTTGGCCCTACC
TTTGACAGTCTGGGGACCAACTTCGGCACATTTTGCACTCCAAAATGCTC
AAGCGACAGCTCCAGCGTTCTATCAAACTTTAATTGCCATAGACGAGGAG
CTGGGTGGAGGCAAGCAGAAGCTTTTGCAGCCTGTGGCCTTGGCAACACA
CCTCTCCCTCGCGTTGCTCGACCCTGACGATGCAGTTCACCCATACGCCC
GCTTTTTGTACGAGACAAGCCAGAAGGGTGTCCCACATCCGTTGTTGCTC
GACCCTCATGTTTTAAGGGAGGGGCTGCAGGCCAGTCCAGTGGTGGCGGC
GGTGAAGAAACGACAAGAGCTTTTCACATACGTACATCAACGCTTATTTG
GCAGTGCTGCTACTGCTACTCCCGCTGAGACAATTCCGAATCAAGCGTCA
TTTTTGCCTATTTCGATCTTTCTCTGGTCTCTTTCCCGGGTCTTATCCCG
TGGTGTTTCCGGTCCTGGTAAGCCGTTGACCTTCCTCCCGTTCTATGATT
TGATGAATCACCGGCGCGCAGAGGCCAATTGCGAATACACCCTCGATATC
AATGAAGGCACTATTGAAGTCAAAGCCACGAGGACAATTGAAGGCGGCGA
GGAATTGTTTTTATGTTATAGTGATACCAAGGATAATCATCAGATGTTTT
TGACGTATGGTTTTGTGGACGAGGGAAACCCTGTAGGGATGACAATGAGG
GTGGGTTTGAATGAAAGTGAGGAAAGAGAGGAGGGAGGGGCAGATATAGA
GTGGGTGATAGGCGGTGGCGCGGAAGAAGAAAAGAAGGAAAGGGCGAGGT
TTGAATGTGCTTTGGCTGCTGTCCGCGGGGGGAAGGGGGGGAGGGACGGG
TTGTCAGAGGGAGAAGGAATGGGTGTGATGAAGGGGGCGGTTGTGCGACG
TTTGCAACAGTACCAGACATCATTGGAGGAGGACAGGGCGACGCTGCGGG
AGATGGATGGAGAGAGGGAGTGTAAACATAAGAGCGAGGAAGGACAAGCA
CAGGATTTGGTTTTGCGACGGACAACGCTCGCATTGCTGGTGGAGGAGAA
GACATGTTTGCAGCGAGCTTTGAAATGCTTGGCTAGAAGAGAAAGGGAGG
GTATTGGATTTGAACAAAGATAGATAAATAAATGAAATGACATAGACAAA
GCAAAATTCCAGGATTTTCATCATGCCTTTGGTTGCAGCTTTTGCAGCTT
TTACC
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protein sequence of jgi.p|Nanoce1779_2|631077

>mRNA_5463-protein ID=mRNA_5463-protein|Name=jgi.p|Nanoce1779_2|631077|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MLRRAAQTLGPETAQLVTWVEKQAQTAGRICALGPRPPLPILTPSNGLGL
AALSPQGYAAGDVVLALPLTVWGPTSAHFALQNAQATAPAFYQTLIAIDE
ELGGGKQKLLQPVALATHLSLALLDPDDAVHPYARFLYETSQKGVPHPLL
LDPHVLREGLQASPVVAAVKKRQELFTYVHQRLFGSAATATPAETIPNQA
SFLPISIFLWSLSRVLSRGVSGPGKPLTFLPFYDLMNHRRAEANCEYTLD
INEGTIEVKATRTIEGGEELFLCYSDTKDNHQMFLTYGFVDEGNPVGMTM
RVGLNESEEREEGGADIEWVIGGGAEEEKKERARFECALAAVRGGKGGRD
GLSEGEGMGVMKGAVVRRLQQYQTSLEEDRATLREMDGERECKHKSEEGQ
AQDLVLRRTTLALLVEEKTCLQRALKCLARREREGIGFEQR*
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mRNA from alignment at scaffold_13:476755..478359-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5463 ID=mRNA_5463|Name=jgi.p|Nanoce1779_2|631077|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp|location=Sequence derived from alignment at scaffold_13:476755..478359- (Nannochloropsis oceanica)
CTTCTTGTACATTTTCGCATCGCAGTGCACTCGAAAATGAAGCTAATTAA
TGCACTCATTACTTCACCCTTACTGTCCGATAATAGGTATCGGTCAGCTG
GCCCGGGCGAGGCTCCGCCTGAATCAACTAGACGCTCGATCCCACAAACC
TCCGCGTAGTCGCAGGAGGTCAGGTCCCCGCTTACCTTACACACCAAATG
CTGCGCCGCGCCGCCCAGACCCTTGGTCCCGAGACGGCGCAACTGGTAAC
TTGGGTGGAGAAGCAGGCACAGACAGCAGGAAGGATATGCGCACTCGGTC
CAAGACCCCCTTTACCCATCCTCACACCTTCAAATGGCTTGGGCCTCGCG
GCCCTCTCCCCTCAAGGCTACGCAGCAGGCGATGTAGTCTTGGCCCTACC
TTTGACAGTCTGGGGACCAACTTCGGCACATTTTGCACTCCAAAATGCTC
AAGCGACAGCTCCAGCGTTCTATCAAACTTTAATTGCCATAGACGAGGAG
CTGGGTGGAGGCAAGCAGAAGCTTTTGCAGCCTGTGGCCTTGGCAACACA
CCTCTCCCTCGCGTTGCTCGACCCTGACGATGCAGTTCACCCATACGCCC
GCTTTTTGTACGAGACAAGCCAGAAGGGTGTCCCACATCCGTTGTTGCTC
GACCCTCATGTTTTAAGGGAGGGGCTGCAGGCCAGTCCAGTGGTGGCGGC
GGTGAAGAAACGACAAGAGCTTTTCACATACGTACATCAACGCTTATTTG
GCAGTGCTGCTACTGCTACTCCCGCTGAGACAATTCCGAATCAAGCGTCA
TTTTTGCCTATTTCGATCTTTCTCTGGTCTCTTTCCCGGGTCTTATCCCG
TGGTGTTTCCGGTCCTGGTAAGCCGTTGACCTTCCTCCCGTTCTATGATT
TGATGAATCACCGGCGCGCAGAGGCCAATTGCGAATACACCCTCGATATC
AATGAAGGCACTATTGAAGTCAAAGCCACGAGGACAATTGAAGGCGGCGA
GGAATTGTTTTTATGTTATAGTGATACCAAGGATAATCATCAGATGTTTT
TGACGTATGGTTTTGTGGACGAGGGAAACCCTGTAGGGATGACAATGAGG
GTGGGTTTGAATGAAAGTGAGGAAAGAGAGGAGGGAGGGGCAGATATAGA
GTGGGTGATAGGCGGTGGCGCGGAAGAAGAAAAGAAGGAAAGGGCGAGGT
TTGAATGTGCTTTGGCTGCTGTCCGCGGGGGGAAGGGGGGGAGGGACGGG
TTGTCAGAGGGAGAAGGAATGGGTGTGATGAAGGGGGCGGTTGTGCGACG
TTTGCAACAGTACCAGACATCATTGGAGGAGGACAGGGCGACGCTGCGGG
AGATGGATGGAGAGAGGGAGTGTAAACATAAGAGCGAGGAAGGACAAGCA
CAGGATTTGGTTTTGCGACGGACAACGCTCGCATTGCTGGTGGAGGAGAA
GACATGTTTGCAGCGAGCTTTGAAATGCTTGGCTAGAAGAGAAAGGGAGG
GTATTGGATTTGAACAAAGATAGATAAATAAATGAAATGACATAGACAAA
GCAAAATTCCAGGATTTTCATCATGCCTTTGGTTGCAGCTTTTGCAGCTT
TTACC
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Coding sequence (CDS) from alignment at scaffold_13:476755..478359-

>mRNA_5463 ID=mRNA_5463|Name=jgi.p|Nanoce1779_2|631077|organism=Nannochloropsis oceanica|type=CDS|length=1326bp|location=Sequence derived from alignment at scaffold_13:476755..478359- (Nannochloropsis oceanica)
ATGCTGCGCCGCGCCGCCCAGACCCTTGGTCCCGAGACGGCGCAACTGGT
AACTTGGGTGGAGAAGCAGGCACAGACAGCAGGAAGGATATGCGCACTCG
GTCCAAGACCCCCTTTACCCATCCTCACACCTTCAAATGGCTTGGGCCTC
GCGGCCCTCTCCCCTCAAGGCTACGCAGCAGGCGATGTAGTCTTGGCCCT
ACCTTTGACAGTCTGGGGACCAACTTCGGCACATTTTGCACTCCAAAATG
CTCAAGCGACAGCTCCAGCGTTCTATCAAACTTTAATTGCCATAGACGAG
GAGCTGGGTGGAGGCAAGCAGAAGCTTTTGCAGCCTGTGGCCTTGGCAAC
ACACCTCTCCCTCGCGTTGCTCGACCCTGACGATGCAGTTCACCCATACG
CCCGCTTTTTGTACGAGACAAGCCAGAAGGGTGTCCCACATCCGTTGTTG
CTCGACCCTCATGTTTTAAGGGAGGGGCTGCAGGCCAGTCCAGTGGTGGC
GGCGGTGAAGAAACGACAAGAGCTTTTCACATACGTACATCAACGCTTAT
TTGGCAGTGCTGCTACTGCTACTCCCGCTGAGACAATTCCGAATCAAGCG
TCATTTTTGCCTATTTCGATCTTTCTCTGGTCTCTTTCCCGGGTCTTATC
CCGTGGTGTTTCCGGTCCTGGTAAGCCGTTGACCTTCCTCCCGTTCTATG
ATTTGATGAATCACCGGCGCGCAGAGGCCAATTGCGAATACACCCTCGAT
ATCAATGAAGGCACTATTGAAGTCAAAGCCACGAGGACAATTGAAGGCGG
CGAGGAATTGTTTTTATGTTATAGTGATACCAAGGATAATCATCAGATGT
TTTTGACGTATGGTTTTGTGGACGAGGGAAACCCTGTAGGGATGACAATG
AGGGTGGGTTTGAATGAAAGTGAGGAAAGAGAGGAGGGAGGGGCAGATAT
AGAGTGGGTGATAGGCGGTGGCGCGGAAGAAGAAAAGAAGGAAAGGGCGA
GGTTTGAATGTGCTTTGGCTGCTGTCCGCGGGGGGAAGGGGGGGAGGGAC
GGGTTGTCAGAGGGAGAAGGAATGGGTGTGATGAAGGGGGCGGTTGTGCG
ACGTTTGCAACAGTACCAGACATCATTGGAGGAGGACAGGGCGACGCTGC
GGGAGATGGATGGAGAGAGGGAGTGTAAACATAAGAGCGAGGAAGGACAA
GCACAGGATTTGGTTTTGCGACGGACAACGCTCGCATTGCTGGTGGAGGA
GAAGACATGTTTGCAGCGAGCTTTGAAATGCTTGGCTAGAAGAGAAAGGG
AGGGTATTGGATTTGAACAAAGATAG
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Synonyms
Publications