jgi.p|Nanoce1779_2|592591, mRNA_5462 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592591
Unique Name	mRNA_5462
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1883
Alignment location	scaffold_13:474913..476795 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592677
Track	FilteredModels2
ProteinId	592591

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:474913..476795 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592591	gene_5462	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592591	mRNA_5462-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5462	CDS_5462	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:474913..476795+
coding sequence from alignment at scaffold_13:474913..476795+

mRNA sequence

>mRNA_5462 ID=mRNA_5462|Name=jgi.p|Nanoce1779_2|592591|organism=Nannochloropsis oceanica|type=mRNA|length=1883bp
TTTGCTTCCCTTTTCTTGGCCCTTGCACCAGGCTTGTGGTATATTATTTG
GACTCCCCCCCCTCTTCCTCCCTCGGCTCTTTCGCGCCAAGCGCACTCTC
CCCGGTATCTCGGTAAAAAAAACAAGTATCGGACAGCCGCTAGCAGTGTT
GGGTGCACATTCTTTGGTCGCGATGCGACTCTCCTGTCTTCTCCCGCCTT
TCCCCGGCCGTGTGATCCTTTCGGGCACCGCACGCTAATTTGCCCCACCC
CCCCCCGGCCGCTGTCACCTCCGAACACCACCGCACCCTGGCAATCCAGA
CTCGCAAGTCTAAGTCCAAGTCTGCAGCCGTGGAAAGTCCAAGTCTGAGA
CCTTGGAATACTTGGGACTTGGGCATGCGAGTCTGGATTGCCATGGTGTG
GTGGTGGGTGGTGACGAGAGAATGTCTGCGGCAGGGGAGGGGGGAGAAGG
AGGGGGGAGGGGGCAAGTTCCCGTGCGGATCCCTGGGGAGATTCCATGGT
GTACGGAGGAAGGCGGGAGAACACAGGGGGGGCACCTCGTGGAAAGAAAT
AAAAGAACGATCATGACGTTTGGAATGCAAAACCGTGCCGAGCCATTACC
GGAAGGCAATATGTCGGCGATCTCCCAAACTTTAGAGGAGCAGCTCTTTT
TGGTCCTCGTGTCACGTGCATGTCTCCACTCACAACCCACCATCACACCC
ACCCAGGCCCTCTCTATAATATTCAGAGCTCTGGCCCGCAGTCGGACAGG
GTATAGGAGTCGTAGACCATTATTTTTCTCGTCCACCACGCGATGTTCCC
TTGGGTACGCACTGCATGGCACGGCTCCGTGTCGAAGCAATGTCCAAGCC
CGCCGATGCTTTTTTTTTTTCAAACGAGACCAAAGATAACCAACCACAAA
CAACACCGTGTACACTCGATGCACAAGGCCATGCAACAGGAAATGTGCCT
AGGCCACTCACCGTCTCTTATCCCTCATTCACGTCACAGGAAGGAAGGGA
AGCACCGAGAGGCAGACAGGAGCAGGAGGGAGCTCATCGCGAAGAGCAGC
CTGCGAGTCATAAGCACAACTAAGCTTTGCAAACAACCACAGGCGCCATT
TAACACTACCATGGCATATCGCACATTCCACTTTCTACTTGTCGGCTTGG
CCGTCGTGGGCAGCAGCTTGGATTCGTCGTCTCTGCACTTGTCTTTCCGC
AAGCTCAGCCAATTCCAAGGCCCGACCGTTGATGGGCTACCTCTCGATTA
TTGCCTTCATTACGAGCTCGCGCATTACGGTCCAGACAATTCTTTGACTG
CAAAGCATGGGCACGATTGTGGGAAGCCCGCCGCGGACGAGTTTTGTATA
AGACAAGGATACAAGGAAGGGAGTGAGTGGTTTTCGGTTATGTACTATTC
AAGGGGTGCGACCTACGTCTTGGGAGATGAGGCTGTGAACCCCGCGGACA
CGAACATGGGAAAAGGAGAGCATACGTACATTGATAGGTTGACATGCAAG
GAGAAGAAGGAAAGGTAATGAGAGAGTTGGTGAAGGAGAGACAGTTTTGC
GGGGCAGAATGGAGCGGGAGAACTAAAAATTTGTGTACCAAAAACATTGA
TGTAGAGAAAGCGATAAACTATAATCTGGAGACACAGACCCAACACACAT
TTGCCGTGTGGTCTTTTAGATTTATATACGACGTGTGCGAGGCGGGAGCT
TGAGACGTTTCCGGGACTCTGAGAGACACAGTCCCACAGGTGTAGCTATC
ATTAGAAAACGAAAAAAGGTCAGCAATAGAATCAAAGAACAAATTAAGGT
CAGCAGAATTTCGCAATGTGTACCTATACCTGGCATAGATTAGGTAAAAG
CTGCAAAAGCTGCAACCAAAGGCATGATGAAAA

protein sequence of jgi.p|Nanoce1779_2|592591

>mRNA_5462-protein ID=mRNA_5462-protein|Name=jgi.p|Nanoce1779_2|592591|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MFPWVRTAWHGSVSKQCPSPPMLFFFQTRPKITNHKQHRVHSMHKAMQQE
MCLGHSPSLIPHSRHRKEGKHREADRSRRELIAKSSLRVISTTKLCKQPQ
APFNTTMAYRTFHFLLVGLAVVGSSLDSSSLHLSFRKLSQFQGPTVDGLP
LDYCLHYELAHYGPDNSLTAKHGHDCGKPAADEFCIRQGYKEGSEWFSVM
YYSRGATYVLGDEAVNPADTNMGKGEHTYIDRLTCKEKKER*

mRNA from alignment at scaffold_13:474913..476795+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5462 ID=mRNA_5462|Name=jgi.p|Nanoce1779_2|592591|organism=Nannochloropsis oceanica|type=mRNA|length=1883bp|location=Sequence derived from alignment at scaffold_13:474913..476795+ (Nannochloropsis oceanica)
TTTGCTTCCCTTTTCTTGGCCCTTGCACCAGGCTTGTGGTATATTATTTG
GACTCCCCCCCCTCTTCCTCCCTCGGCTCTTTCGCGCCAAGCGCACTCTC
CCCGGTATCTCGGTAAAAAAAACAAGTATCGGACAGCCGCTAGCAGTGTT
GGGTGCACATTCTTTGGTCGCGATGCGACTCTCCTGTCTTCTCCCGCCTT
TCCCCGGCCGTGTGATCCTTTCGGGCACCGCACGCTAATTTGCCCCACCC
CCCCCCGGCCGCTGTCACCTCCGAACACCACCGCACCCTGGCAATCCAGA
CTCGCAAGTCTAAGTCCAAGTCTGCAGCCGTGGAAAGTCCAAGTCTGAGA
CCTTGGAATACTTGGGACTTGGGCATGCGAGTCTGGATTGCCATGGTGTG
GTGGTGGGTGGTGACGAGAGAATGTCTGCGGCAGGGGAGGGGGGAGAAGG
AGGGGGGAGGGGGCAAGTTCCCGTGCGGATCCCTGGGGAGATTCCATGGT
GTACGGAGGAAGGCGGGAGAACACAGGGGGGGCACCTCGTGGAAAGAAAT
AAAAGAACGATCATGACGTTTGGAATGCAAAACCGTGCCGAGCCATTACC
GGAAGGCAATATGTCGGCGATCTCCCAAACTTTAGAGGAGCAGCTCTTTT
TGGTCCTCGTGTCACGTGCATGTCTCCACTCACAACCCACCATCACACCC
ACCCAGGCCCTCTCTATAATATTCAGAGCTCTGGCCCGCAGTCGGACAGG
GTATAGGAGTCGTAGACCATTATTTTTCTCGTCCACCACGCGATGTTCCC
TTGGGTACGCACTGCATGGCACGGCTCCGTGTCGAAGCAATGTCCAAGCC
CGCCGATGCTTTTTTTTTTTCAAACGAGACCAAAGATAACCAACCACAAA
CAACACCGTGTACACTCGATGCACAAGGCCATGCAACAGGAAATGTGCCT
AGGCCACTCACCGTCTCTTATCCCTCATTCACGTCACAGGAAGGAAGGGA
AGCACCGAGAGGCAGACAGGAGCAGGAGGGAGCTCATCGCGAAGAGCAGC
CTGCGAGTCATAAGCACAACTAAGCTTTGCAAACAACCACAGGCGCCATT
TAACACTACCATGGCATATCGCACATTCCACTTTCTACTTGTCGGCTTGG
CCGTCGTGGGCAGCAGCTTGGATTCGTCGTCTCTGCACTTGTCTTTCCGC
AAGCTCAGCCAATTCCAAGGCCCGACCGTTGATGGGCTACCTCTCGATTA
TTGCCTTCATTACGAGCTCGCGCATTACGGTCCAGACAATTCTTTGACTG
CAAAGCATGGGCACGATTGTGGGAAGCCCGCCGCGGACGAGTTTTGTATA
AGACAAGGATACAAGGAAGGGAGTGAGTGGTTTTCGGTTATGTACTATTC
AAGGGGTGCGACCTACGTCTTGGGAGATGAGGCTGTGAACCCCGCGGACA
CGAACATGGGAAAAGGAGAGCATACGTACATTGATAGGTTGACATGCAAG
GAGAAGAAGGAAAGGTAATGAGAGAGTTGGTGAAGGAGAGACAGTTTTGC
GGGGCAGAATGGAGCGGGAGAACTAAAAATTTGTGTACCAAAAACATTGA
TGTAGAGAAAGCGATAAACTATAATCTGGAGACACAGACCCAACACACAT
TTGCCGTGTGGTCTTTTAGATTTATATACGACGTGTGCGAGGCGGGAGCT
TGAGACGTTTCCGGGACTCTGAGAGACACAGTCCCACAGGTGTAGCTATC
ATTAGAAAACGAAAAAAGGTCAGCAATAGAATCAAAGAACAAATTAAGGT
CAGCAGAATTTCGCAATGTGTACCTATACCTGGCATAGATTAGGTAAAAG
CTGCAAAAGCTGCAACCAAAGGCATGATGAAAA

Coding sequence (CDS) from alignment at scaffold_13:474913..476795+

>mRNA_5462 ID=mRNA_5462|Name=jgi.p|Nanoce1779_2|592591|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_13:474913..476795+ (Nannochloropsis oceanica)
ATGTTCCCTTGGGTACGCACTGCATGGCACGGCTCCGTGTCGAAGCAATG
TCCAAGCCCGCCGATGCTTTTTTTTTTTCAAACGAGACCAAAGATAACCA
ACCACAAACAACACCGTGTACACTCGATGCACAAGGCCATGCAACAGGAA
ATGTGCCTAGGCCACTCACCGTCTCTTATCCCTCATTCACGTCACAGGAA
GGAAGGGAAGCACCGAGAGGCAGACAGGAGCAGGAGGGAGCTCATCGCGA
AGAGCAGCCTGCGAGTCATAAGCACAACTAAGCTTTGCAAACAACCACAG
GCGCCATTTAACACTACCATGGCATATCGCACATTCCACTTTCTACTTGT
CGGCTTGGCCGTCGTGGGCAGCAGCTTGGATTCGTCGTCTCTGCACTTGT
CTTTCCGCAAGCTCAGCCAATTCCAAGGCCCGACCGTTGATGGGCTACCT
CTCGATTATTGCCTTCATTACGAGCTCGCGCATTACGGTCCAGACAATTC
TTTGACTGCAAAGCATGGGCACGATTGTGGGAAGCCCGCCGCGGACGAGT
TTTGTATAAGACAAGGATACAAGGAAGGGAGTGAGTGGTTTTCGGTTATG
TACTATTCAAGGGGTGCGACCTACGTCTTGGGAGATGAGGCTGTGAACCC
CGCGGACACGAACATGGGAAAAGGAGAGCATACGTACATTGATAGGTTGA
CATGCAAGGAGAAGAAGGAAAGGTAA

Synonyms

Publications