Properties
| Property Name | Value |
|---|
| TranscriptId | 592676 |
| Track | FilteredModels2 |
| ProteinId | 592590 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:473026..474889 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5461 ID=mRNA_5461|Name=jgi.p|Nanoce1779_2|592590|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp
ACAGGCATGACCCAATATGTTGACAACGACAAATGCGTTGACTATGTAGA
CCTGAACACGATCGTGGCGCGCAGAAGGTCTGGCAAGCCCAACCCCTCTC
CCATCCCCTCTCTCGCTTCTCAAGCCGCACCTTCGTCAACTCCGCCAACC
CCCGCTTCCACTGGAAATGTTGCTCCCAGTCCCTCACCCTCCCTGCAACG
GGCCATCCACCGCCTCTATCATGATACGGTTGCCCTCGCCCCTATGGTCC
GCGCCGGCACGTTGCCTTTACGCTTGCTCGCCCTCCAGTATGGGTGCAAT
GTCGTATACGGCGAAGAAATCATCGATAGGAAACTCATGCAATGCATTCG
GGAAGAGAACCGGGCCTTGGGCACCATCGATTTTGTCACCAAAAGCAGCA
GCAGCGGCAGCAAGGGCGAGGGGATAACGGAGCTTCGACGCCTTGTTTTC
CAAACAGTCGCACGAGAGAAGGAGTGCGTCATTTTCCAGATGGGTACGCG
GAATCCGGAATGGGCTGTGCAGGCTGCAAAGGTGATCGAGCATGACGTGG
CGGCCATTGATTTGAATATGGGCTGCCCAAAGAAATTCTCCCTCCAAGAC
GGCATGGGCGCCGCCCTGCTCGACAACCCCCAAACAGCCTCCAGCCTCAT
CACTGCTCTCCGGCTTGCCTGTCCACACCTCCCCATATCCTGTAAGATCC
GACTTTTGGACACCGATCTCCCACTTCCCAAAACAATCGCGTTTGCAAAA
GCCATGGAAGCGGCAGGGGCCTGTGCTTTGAACGTGCATATGAGAACAAA
GGAGGACAAGCAATCTGATCCAGCCCGATGGGAGCTATTGCGGCCAGTCG
TTGATGCAGTTCAAATTCCTGTCGTTGCCAATGGGGATTTGTACACGAGG
GAGGACGTGGAGAGGATGAGGGCGATGTCGGGGTGCGCGGCGGTGATGCT
GGCGAGACCTGTGTTGTACAATCCAAGTGTGTTGCGGACTTTGAGGTGTG
GTACGACAAAGGATGGAGGGAAAGAGGGCGCTACTGTCCACGAGGTTACG
ACCATTTCGTCGTCCTCAGCGTTGTCTTCCCCCGTATCCTCGAGACTCCT
TCCATTGATTGAGGTCATTCGTGCCTATCTCCGGGTCTGTCTGCGATACG
AAAGTCATGTCAGCAATGCCAAATACGTAGTTCTGGAAATGATCGTCCGT
CGTCGCCACCCTGACCATGTCAAGCCCGTCCTACTCCCTCTTGACGTCTC
TGAGGGGATAAATGTGAATACGGTCAGTAGAACCAAGACATTGCACGCCT
TGGCGGAACTGTTCGGGGTAGTGGCGGAGAAGGGGGAGGGAAAGAGGATG
GATGCCGGAAGCATCGGCATTGAAGGCTTACATCATTATGCAGATGATTA
TTTTGGATCGGCGAAGGTAGAGCAGGGAGGGGTGGTGGTCGCCAAGAGGA
GAGAGGGGGGAAAGGAGTGTGCTGGGGCAGAATGCTTGTGCAGCAAGAGG
CAAAAAGTACGAGAGGAATTCAAAGCAGACTCGGTGGCTCAGATAACATC
AGCAGGAGCACAATAGAGCCTAGAAGCAAGAA back to topprotein sequence of jgi.p|Nanoce1779_2|592590 >mRNA_5461-protein ID=mRNA_5461-protein|Name=jgi.p|Nanoce1779_2|592590|organism=Nannochloropsis oceanica|type=polypeptide|length=520bp
MTQYVDNDKCVDYVDLNTIVARRRSGKPNPSPIPSLASQAAPSSTPPTPA
STGNVAPSPSPSLQRAIHRLYHDTVALAPMVRAGTLPLRLLALQYGCNVV
YGEEIIDRKLMQCIREENRALGTIDFVTKSSSSGSKGEGITELRRLVFQT
VAREKECVIFQMGTRNPEWAVQAAKVIEHDVAAIDLNMGCPKKFSLQDGM
GAALLDNPQTASSLITALRLACPHLPISCKIRLLDTDLPLPKTIAFAKAM
EAAGACALNVHMRTKEDKQSDPARWELLRPVVDAVQIPVVANGDLYTRED
VERMRAMSGCAAVMLARPVLYNPSVLRTLRCGTTKDGGKEGATVHEVTTI
SSSSALSSPVSSRLLPLIEVIRAYLRVCLRYESHVSNAKYVVLEMIVRRR
HPDHVKPVLLPLDVSEGINVNTVSRTKTLHALAELFGVVAEKGEGKRMDA
GSIGIEGLHHYADDYFGSAKVEQGGVVVAKRREGGKECAGAECLCSKRQK
VREEFKADSVAQITSAGAQ* back to topmRNA from alignment at scaffold_13:473026..474889+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5461 ID=mRNA_5461|Name=jgi.p|Nanoce1779_2|592590|organism=Nannochloropsis oceanica|type=mRNA|length=1864bp|location=Sequence derived from alignment at scaffold_13:473026..474889+ (Nannochloropsis oceanica)
ACAGGCATGACCCAATATGTTGACAACGACAAATGCGTTGACTATGTAGA
CCTGAACACGATCGTGGCGCGCAGAAGGTCTGGCAAGCCCAACCCCTCTC
CCATCCCCTCTCTCGCTTCTCAAGCCGCACCTTCGTCAACTCCGCCAACC
CCCGCTTCCACTGGAAATGTTGCTCCCAGTCCCTCACCCTCCCTGCAACG
GGCCATCCACCGCCTCTATCATGATACGGTTGCCCTCGGTACGTGCCTCT
TTATGCCAGTCAACCTCCTGTCATCAATTTCCTCATCAACCTTCCACTCT
ACACTCTCCAACATACAGCCCCTATGGTCCGCGCCGGCACGTTGCCTTTA
CGCTTGCTCGCCCTCCAGTATGGGTGCAATGTCGTATACGGCGAAGAAAT
CATCGATAGGAAACTCATGCAATGCATTCGGGAAGAGAACCGGGCCTTGG
GCACCATCGATTTTGTCACCAAAAGCAGCAGCAGCGGCAGCAAGGGCGAG
GGGATAACGGAGCTTCGACGCCTTGTTTTCCAAACAGTCGCACGAGAGAA
GGAGTGCGTCATTTTCCAGATGGGTACGCGGAATCCGGAATGGGCTGTGC
AGGCTGCAAAGGTGATCGAGCATGACGTGGCGGCCATTGATTTGAATATG
GTGAGTATAAGAAGGTTTGGAGGAGGACGGACGGAGGACGGACGGACGGA
CGGACGGAAGAGAGGACCCATCACCAAGAGTAAAGCAAATAGCATCTGCA
TCCATTTGGTGTCTCTGTCATTTTTACTGTTATAAATTACGCCTCTTAAC
TCACATCCTCTTCTCCCGCCCTCCGCCTTCATTCCCTCCTCTCAAATCAA
AGGGCTGCCCAAAGAAATTCTCCCTCCAAGACGGCATGGGCGCCGCCCTG
CTCGACAACCCCCAAACAGCCTCCAGCCTCATCACTGCTCTCCGGCTTGC
CTGTCCACACCTCCCCATATCCTGTAAGATCCGACTTTTGGACACCGATC
TCCCACTTCCCAAAACAATCGCGTTTGCAAAAGCCATGGAAGCGGCAGGG
GCCTGTGCTTTGAACGTGCATATGAGAACAAAGGAGGACAAGCAATCTGA
TCCAGCCCGATGGGAGCTATTGCGGCCAGTCGTTGATGCAGTTCAAATTC
CTGTCGTTGCCAATGGGGATTTGTACACGAGGGAGGACGTGGAGAGGATG
AGGGCGATGTCGGGGTGCGCGGCGGTGATGCTGGCGAGACCTGTGTTGTA
CAATCCAAGTGTGTTGCGGACTTTGAGGTGTGGTACGACAAAGGATGGAG
GGAAAGAGGGCGCTACTGTCCACGAGGTTACGACCATTTCGTCGTCCTCA
GCGTTGTCTTCCCCCGTATCCTCGAGACTCCTTCCATTGATTGAGGTCAT
TCGTGCCTATCTCCGGGTCTGTCTGCGATACGAAAGTCATGTCAGCAATG
CCAAATACGTAGTTCTGGAAATGATCGTCCGTCGTCGCCACCCTGACCAT
GTCAAGCCCGTCCTACTCCCTCTTGACGTCTCTGAGGGGATAAATGTGAA
TACGGTCAGTAGAACCAAGACATTGCACGCCTTGGCGGAACTGTTCGGGG
TAGTGGCGGAGAAGGGGGAGGGAAAGAGGATGGATGCCGGAAGCATCGGC
ATTGAAGGCTTACATCATTATGCAGATGATTATTTTGGATCGGCGAAGGT
AGAGCAGGGAGGGGTGGTGGTCGCCAAGAGGAGAGAGGGGGGAAAGGAGT
GTGCTGGGGCAGAATGCTTGTGCAGCAAGAGGCAAAAAGTACGAGAGGAA
TTCAAAGCAGACTCGGTGGCTCAGATAACATCAGCAGGAGCACAATAGAG
CCTAGAAGCAAGAA back to topCoding sequence (CDS) from alignment at scaffold_13:473026..474889+ >mRNA_5461 ID=mRNA_5461|Name=jgi.p|Nanoce1779_2|592590|organism=Nannochloropsis oceanica|type=CDS|length=4680bp|location=Sequence derived from alignment at scaffold_13:473026..474889+ (Nannochloropsis oceanica)
ATGACCCAATATGTTGACAACGACAAATGCGTTGACTATGTAGACCTGAA
CACGATCGTGGCGCGCAGAAGGTCTGGCAAGCCCAACCCCTCTCCCATCC
CCTCTCTCGCTTCTCAAGCCGCACCTTCGTCAACTCCGCCAACCCCCGCT
TCCACTGGAAATGTTGCTCCCAGTCCCTCACCCTCCCTGCAACGGGCCAT
CCACCGCCTCTATCATGATACGGTTGCCCTCGCCCCTATGGTCCGCGCCG
GCACGTTGCCTTTACGCTTGCTCGCCCTCCAGTATGGGTGCAATGTCGTA
TACGGCGAAGAAATCATCGATAGGAAACTCATGCAATGCATTCGGGAAGA
GAACCGGGCCTTGGGCACCATCGATTTTGTCACCAAAAGCAGCAGCAGCG
GCAGCAAGGGCGAGGGGATAACGGAGCTTCGACGCCTTGTTTTCCAAACA
GTCGCACGAGAGAAGGAGTGCGTCATTTTCCAGATGGGTACGCGGAATCC
GGAATGGGCTGTGCAGGCTGCAAAGGTGATCGAGCATGACGTGGCGGCCA
TTGATTTGAATATGGGCTGCCCAAAGAAATTCTCCCTCCAAGACGGCATG
GGCGCCGCCCTGCTCGACAACCCCCAAACAGCCTCCAGCCTCATCACTGC
TCTCCGGCTTGCCTGTCCACACCTCCCCATATCCTGTAAGATCCGACTTT
TGGACACCGATCTCCCACTTCCCAAAACAATCGCGTTTGCAAAAGCCATG
GAAGCGGCAGGGGCCTGTGCTTTGAACGTGCATATGAGAACAAAGGAGGA
CAAGCAATCTGATCCAGCCCGATGGGAGCTATTGCGGCCAGTCGTTGATG
CAGTTCAAATTCCTGTCGTTGCCAATGGGGATTTGTACACGAGGGAGGAC
GTGGAGAGGATGAGGGCGATGTCGGGGTGCGCGGCGGTGATGCTGGCGAG
ACCTGTGTTGTACAATCCAAGTGTGTTGCGGACTTTGAGGTGTGGTACGA
CAAAGGATGGAGGGAAAGAGGGCGCTACTGTCCACGAGGTTACGACCATT
TCGTCGTCCTCAGCGTTGTCTTCCCCCGTATCCTCGAGACTCCTTCCATT
GATTGAGGTCATTCGTGCCTATCTCCGGGTCTGTCTGCGATACGAAAGTC
ATGTCAGCAATGCCAAATACGTAGTTCTGGAAATGATCGTCCGTCGTCGC
CACCCTGACCATGTCAAGCCCGTCCTACTCCCTCTTGACGTCTCTGAGGG
GATAAATGTGAATACGGTCAGTAGAACCAAGACATTGCACGCCTTGGCGG
AACTGTTCGGGGTAGTGGCGGAGAAGGGGGAGGGAAAGAGGATGGATGCC
GGAAGCATCGGCATTGAAGGCTTACATCATTATGCAGATGATTATTTTGG
ATCGGCGAAGGTAGAGCAGGGAGGGGTGGTGGTCGCCAAGAGGAGAGAGG
GGGGAAAGGAGTGTGCTGGGGCAGAATGCTTGTGCAGCAAGAGGCAAAAA
GTACGAGAGGAATTCAAAGCAGACTCGGTGGCTCAGATAACATCAGCAGG
AGCACAATAGATGACCCAATATGTTGACAACGACAAATGCGTTGACTATG
TAGACCTGAACACGATCGTGGCGCGCAGAAGGTCTGGCAAGCCCAACCCC
TCTCCCATCCCCTCTCTCGCTTCTCAAGCCGCACCTTCGTCAACTCCGCC
AACCCCCGCTTCCACTGGAAATGTTGCTCCCAGTCCCTCACCCTCCCTGC
AACGGGCCATCCACCGCCTCTATCATGATACGGTTGCCCTCGCCCCTATG
GTCCGCGCCGGCACGTTGCCTTTACGCTTGCTCGCCCTCCAGTATGGGTG
CAATGTCGTATACGGCGAAGAAATCATCGATAGGAAACTCATGCAATGCA
TTCGGGAAGAGAACCGGGCCTTGGGCACCATCGATTTTGTCACCAAAAGC
AGCAGCAGCGGCAGCAAGGGCGAGGGGATAACGGAGCTTCGACGCCTTGT
TTTCCAAACAGTCGCACGAGAGAAGGAGTGCGTCATTTTCCAGATGGGTA
CGCGGAATCCGGAATGGGCTGTGCAGGCTGCAAAGGTGATCGAGCATGAC
GTGGCGGCCATTGATTTGAATATGGGCTGCCCAAAGAAATTCTCCCTCCA
AGACGGCATGGGCGCCGCCCTGCTCGACAACCCCCAAACAGCCTCCAGCC
TCATCACTGCTCTCCGGCTTGCCTGTCCACACCTCCCCATATCCTGTAAG
ATCCGACTTTTGGACACCGATCTCCCACTTCCCAAAACAATCGCGTTTGC
AAAAGCCATGGAAGCGGCAGGGGCCTGTGCTTTGAACGTGCATATGAGAA
CAAAGGAGGACAAGCAATCTGATCCAGCCCGATGGGAGCTATTGCGGCCA
GTCGTTGATGCAGTTCAAATTCCTGTCGTTGCCAATGGGGATTTGTACAC
GAGGGAGGACGTGGAGAGGATGAGGGCGATGTCGGGGTGCGCGGCGGTGA
TGCTGGCGAGACCTGTGTTGTACAATCCAAGTGTGTTGCGGACTTTGAGG
TGTGGTACGACAAAGGATGGAGGGAAAGAGGGCGCTACTGTCCACGAGGT
TACGACCATTTCGTCGTCCTCAGCGTTGTCTTCCCCCGTATCCTCGAGAC
TCCTTCCATTGATTGAGGTCATTCGTGCCTATCTCCGGGTCTGTCTGCGA
TACGAAAGTCATGTCAGCAATGCCAAATACGTAGTTCTGGAAATGATCGT
CCGTCGTCGCCACCCTGACCATGTCAAGCCCGTCCTACTCCCTCTTGACG
TCTCTGAGGGGATAAATGTGAATACGGTCAGTAGAACCAAGACATTGCAC
GCCTTGGCGGAACTGTTCGGGGTAGTGGCGGAGAAGGGGGAGGGAAAGAG
GATGGATGCCGGAAGCATCGGCATTGAAGGCTTACATCATTATGCAGATG
ATTATTTTGGATCGGCGAAGGTAGAGCAGGGAGGGGTGGTGGTCGCCAAG
AGGAGAGAGGGGGGAAAGGAGTGTGCTGGGGCAGAATGCTTGTGCAGCAA
GAGGCAAAAAGTACGAGAGGAATTCAAAGCAGACTCGGTGGCTCAGATAA
CATCAGCAGGAGCACAATAGATGACCCAATATGTTGACAACGACAAATGC
GTTGACTATGTAGACCTGAACACGATCGTGGCGCGCAGAAGGTCTGGCAA
GCCCAACCCCTCTCCCATCCCCTCTCTCGCTTCTCAAGCCGCACCTTCGT
CAACTCCGCCAACCCCCGCTTCCACTGGAAATGTTGCTCCCAGTCCCTCA
CCCTCCCTGCAACGGGCCATCCACCGCCTCTATCATGATACGGTTGCCCT
CGCCCCTATGGTCCGCGCCGGCACGTTGCCTTTACGCTTGCTCGCCCTCC
AGTATGGGTGCAATGTCGTATACGGCGAAGAAATCATCGATAGGAAACTC
ATGCAATGCATTCGGGAAGAGAACCGGGCCTTGGGCACCATCGATTTTGT
CACCAAAAGCAGCAGCAGCGGCAGCAAGGGCGAGGGGATAACGGAGCTTC
GACGCCTTGTTTTCCAAACAGTCGCACGAGAGAAGGAGTGCGTCATTTTC
CAGATGGGTACGCGGAATCCGGAATGGGCTGTGCAGGCTGCAAAGGTGAT
CGAGCATGACGTGGCGGCCATTGATTTGAATATGGGCTGCCCAAAGAAAT
TCTCCCTCCAAGACGGCATGGGCGCCGCCCTGCTCGACAACCCCCAAACA
GCCTCCAGCCTCATCACTGCTCTCCGGCTTGCCTGTCCACACCTCCCCAT
ATCCTGTAAGATCCGACTTTTGGACACCGATCTCCCACTTCCCAAAACAA
TCGCGTTTGCAAAAGCCATGGAAGCGGCAGGGGCCTGTGCTTTGAACGTG
CATATGAGAACAAAGGAGGACAAGCAATCTGATCCAGCCCGATGGGAGCT
ATTGCGGCCAGTCGTTGATGCAGTTCAAATTCCTGTCGTTGCCAATGGGG
ATTTGTACACGAGGGAGGACGTGGAGAGGATGAGGGCGATGTCGGGGTGC
GCGGCGGTGATGCTGGCGAGACCTGTGTTGTACAATCCAAGTGTGTTGCG
GACTTTGAGGTGTGGTACGACAAAGGATGGAGGGAAAGAGGGCGCTACTG
TCCACGAGGTTACGACCATTTCGTCGTCCTCAGCGTTGTCTTCCCCCGTA
TCCTCGAGACTCCTTCCATTGATTGAGGTCATTCGTGCCTATCTCCGGGT
CTGTCTGCGATACGAAAGTCATGTCAGCAATGCCAAATACGTAGTTCTGG
AAATGATCGTCCGTCGTCGCCACCCTGACCATGTCAAGCCCGTCCTACTC
CCTCTTGACGTCTCTGAGGGGATAAATGTGAATACGGTCAGTAGAACCAA
GACATTGCACGCCTTGGCGGAACTGTTCGGGGTAGTGGCGGAGAAGGGGG
AGGGAAAGAGGATGGATGCCGGAAGCATCGGCATTGAAGGCTTACATCAT
TATGCAGATGATTATTTTGGATCGGCGAAGGTAGAGCAGGGAGGGGTGGT
GGTCGCCAAGAGGAGAGAGGGGGGAAAGGAGTGTGCTGGGGCAGAATGCT
TGTGCAGCAAGAGGCAAAAAGTACGAGAGGAATTCAAAGCAGACTCGGTG
GCTCAGATAACATCAGCAGGAGCACAATAG back to top
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