jgi.p|Nanoce1779_2|543153, mRNA_5460 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|543153
Unique Name	mRNA_5460
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2951
Alignment location	scaffold_13:470035..472985 -

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Properties


Property Name	Value
TranscriptId	543239
Track	FilteredModels2
ProteinId	543153

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:470035..472985 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|543153	gene_5460	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|543153	mRNA_5460-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5460	CDS_5460	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:470035..472985-
coding sequence from alignment at scaffold_13:470035..472985-

mRNA sequence

>mRNA_5460 ID=mRNA_5460|Name=jgi.p|Nanoce1779_2|543153|organism=Nannochloropsis oceanica|type=mRNA|length=2951bp
AGATAATTCGCAATGCGGGGAGGCATGGCCAAGACGAAAGCGAGCCTCAC
AGACGAAGCAGGCAAAGCTGCAGGCATAGCATCGGCGTACGAGGCTCAGT
AGTACATTCTCATCGTCGTGCATGCGTGGGGCCTGCCATGGTTGTGTACT
ATGACGTGTGGGCAAAGGCTATCGGGGCCGCGTGCCCCACTATCAGATGC
CCCATCCCATCCCATTCCTAAGCTACCACGACGTAAAAGAAACACGGAGT
CCAACTTGCCATCTCTCAAGCTTTCCCACACCACCCTTGCAACTGCAGCC
ACAGCTCACCTCACCTGCTGCTTTTAATTAGAGAAGCCCCCGGAGAAGAA
GAAACGTCGTCACACTTGCCTTCGTTTACCAAGGGCTCCTAAAACGAAAA
CACCACATAGCAGACAGCCACGGAAGCAGCACAAAGCTGACGGAAAGTAT
CTCGCGGGAAGAGCAGCAGCACCACCACCACCACCAGCAGCAGCAGCACC
AGCAGCACCAGCAGCATCAACAACACCAGCTGCAGCAGCAGCATTAGGTC
CTTGCTCTGAAAATTTCCAAGCAAGACAGTTCCCATTTCTGCGGCACCAC
CACCTATTTCCTTCGTCCAAGTAGACTAGCCACGACACCATGGACGAGCT
CGCTGCGCAGGAGCTCGAGATCCATGAGAATACGGCTGGGAACATTGTCC
CGACTTTGCACTCGTTTATTGGTGGATGTGTAGGTGGCCTAGTCTCGCTT
GTCGCTGGACAGCCGTTTGACACAATCAAGGTCCGCCTTCAAACTTCAAC
GAAATTCGCCGGCGCCGGGGACTGTTTTCGGCAGCTGCTTGCCAACGAAG
GCCCTTTGGCACTGTTCAAAGGCATGTCCTCGCCTGTTCTCTCCGCTTCC
CTCGTGAACGCCATCGTTTTCTCCTCCTACAACGAAACCATGACCCTCAT
GAAAAGAGAAGCGGCGGACTCCAGCAGCATCAGCAGCAAACCCACCTACG
ACCAAGTCTTTGTCGCTGGCTCCGTGGCCGGCGGGCTGCAGTCCTCAGTT
CTCACCCCCACAGAGCTGGTCAAATGCCGCTTGCAGATACAGATGACTTC
TCCCCGATCTCAGGGCTTGGTGCAATGTATTCGGGACGTCTTTAAGGAAA
GGGGTTTCCGGGGTTTTTTCGCGGGATTAGGCCCTACTTTGCTGCGGGAT
TTGCCGGCGTTCGGCTGTTATTTCTCACTGTATGAAATCACAAAGGACGT
GTTGGAGAGCAATGGGCGATCGTTGTGGTTGAGTTCATGTGCGGCGGGGG
GATTGGCCGGGTGCCTGTCGTGGGCCGTGGTCTACCCGATCGACGTCATA
AAAACCACCATGCAGACACAACAAGGGCCAGGGCCTCGGGTGGGCATGCT
CAAGACAGCGACGAGGCTCCTCGAGACAACGGGGCCGGCAGTATTTTTCA
GGGGTATGTCGGTGGCGCTTCTGAGGGCACTGCCGGTAAATTGTATTGTC
TTTCCCGTGTACGAATGGACGGTGGAGTTTTTGGGAAATGTGGATACGGT
GCATAGCACTAGAAGGATTGTCAAGCCGCCGGCACCGGAGAGCAGCGGCG
GCAATAGTAATAGTAATAGCGGAATTCCAGCGACCTGAAGGGGGAGGGAA
GCCAAGGAGAAAAAGATTGTACCATAGTGTGAGCCGACACAGCAGGAGCA
GCAGCAGCTGAAGTAGCAACCGCGAGTGATGCGTAGCCAGAGAAAGGGTG
ATTCTGTACACAAATATTAAGCTTATGTTATATAGATGAACGTGTGACAT
CGCGTGAGGCGGTGAGGGTCAGGCGGCCACTCCTCTCTCCTCCCCCCGAA
ATATATTTGAAAGCTCACACAAAAGCTAGAAATATAAGTACTAAATGAAG
AGCACGCTCAAATACTGACTCACATCAAAATACATCATTCCTTCGTTACG
TAAACCCCGTCAAATTCAACTCCTTGATCACATGCTGATAAGCCCCGAAG
TCCTTCCGCCGCAAGTACTGCATCAAGTTACGCCGCCTCGTCAGCAAAGA
CGTGTACCCACGACGGGCCGCTTTATCTTGCCTGTTTGTTGCGCAATGGT
CTTTGATGTGCTGGATGCGGATCGTCAAACAAGCCACCTGCACAGACGTG
GAGCCTGTGTCGCCTGGTCGGACGCCAAACTTCTCAATTCCCAGCTGCTT
CTCGGCTTGCTTGCGTTCGGGTGCGTCGGCGTTGTCAATGTTTAAAGCCC
GTTCTACTGGCTCGGGGACGGATTGCAGCAGGCTGGCTGGGGTCAGGTAC
TTGTACAAAGGCGTGGCGATGGAGGAAAAGGAGTCTGACGGGGCGGCTGA
GGAGGAGAGCGGGCGACAAGTCGGGGAGGCGGGAGGAGGCAGGGACGAGG
GCGAGGACAAGCGGACCGAATAAAGAAGCCGCTGGCGCCACATAACTTAT
GAGGTCTTGTGTATGTGTACCTGTGTAGTATTCATGTGTGGTCATTGTGT
GAGAAGAGCGATGTGGTCAAGTTGTATGTCGCGTGAGGATCTTCAGGGAT
GATGCTTCATGATGAGTGGCCGATAGGAAGACCAGGAATCCGCCGCCTGC
TGAAGCATTACAGCCTTTGTACTATCGATGCAGCGGTGATGTCAATAACA
TGTGAGCGCTCCCCTTCCAAAATGGCATACGTGCAACGAATGAAAGACGA
GACCCTGCCCGCCCACCGTTTCCGGGCTCCGGGTCACATCTCGCAGCAAG
GGGGAGGTTCGCTTTGAAGCGTACAAATCTACGTCGCTCACTAAAGCTGT
CTAGAGACATGATTCTAATGCTGCACACCATGGTTAGTATCTAGCTCAAC
CAGAATCTGGTACACTTTACGCTGAAATTGCAAAACATGCCCCCTCTTCC
CCCAGAAAAAGCAAAGTCCCCGTTTTTCCACCAAGAGAACAAAATAAATT
G

protein sequence of jgi.p|Nanoce1779_2|543153

>mRNA_5460-protein ID=mRNA_5460-protein|Name=jgi.p|Nanoce1779_2|543153|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MDELAAQELEIHENTAGNIVPTLHSFIGGCVGGLVSLVAGQPFDTIKVRL
QTSTKFAGAGDCFRQLLANEGPLALFKGMSSPVLSASLVNAIVFSSYNET
MTLMKREAADSSSISSKPTYDQVFVAGSVAGGLQSSVLTPTELVKCRLQI
QMTSPRSQGLVQCIRDVFKERGFRGFFAGLGPTLLRDLPAFGCYFSLYEI
TKDVLESNGRSLWLSSCAAGGLAGCLSWAVVYPIDVIKTTMQTQQGPGPR
VGMLKTATRLLETTGPAVFFRGMSVALLRALPVNCIVFPVYEWTVEFLGN
VDTVHSTRRIVKPPAPESSGGNSNSNSGIPAT*

mRNA from alignment at scaffold_13:470035..472985-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5460 ID=mRNA_5460|Name=jgi.p|Nanoce1779_2|543153|organism=Nannochloropsis oceanica|type=mRNA|length=2951bp|location=Sequence derived from alignment at scaffold_13:470035..472985- (Nannochloropsis oceanica)
AGATAATTCGCAATGCGGGGAGGCATGGCCAAGACGAAAGCGAGCCTCAC
AGACGAAGCAGGCAAAGCTGCAGGCATAGCATCGGCGTACGAGGCTCAGT
AGTACATTCTCATCGTCGTGCATGCGTGGGGCCTGCCATGGTTGTGTACT
ATGACGTGTGGGCAAAGGCTATCGGGGCCGCGTGCCCCACTATCAGATGC
CCCATCCCATCCCATTCCTAAGCTACCACGACGTAAAAGAAACACGGAGT
CCAACTTGCCATCTCTCAAGCTTTCCCACACCACCCTTGCAACTGCAGCC
ACAGCTCACCTCACCTGCTGCTTTTAATTAGAGAAGCCCCCGGAGAAGAA
GAAACGTCGTCACACTTGCCTTCGTTTACCAAGGGCTCCTAAAACGAAAA
CACCACATAGCAGACAGCCACGGAAGCAGCACAAAGCTGACGGAAAGTAT
CTCGCGGGAAGAGCAGCAGCACCACCACCACCACCAGCAGCAGCAGCACC
AGCAGCACCAGCAGCATCAACAACACCAGCTGCAGCAGCAGCATTAGGTC
CTTGCTCTGAAAATTTCCAAGCAAGACAGTTCCCATTTCTGCGGCACCAC
CACCTATTTCCTTCGTCCAAGTAGACTAGCCACGACACCATGGACGAGCT
CGCTGCGCAGGAGCTCGAGATCCATGAGAATACGGCTGGGAACATTGTCC
CGACTTTGCACTCGTTTATTGGTGGATGTGTAGGTGGCCTAGTCTCGCTT
GTCGCTGGACAGCCGTTTGACACAATCAAGGTCCGCCTTCAAACTTCAAC
GAAATTCGCCGGCGCCGGGGACTGTTTTCGGCAGCTGCTTGCCAACGAAG
GCCCTTTGGCACTGTTCAAAGGCATGTCCTCGCCTGTTCTCTCCGCTTCC
CTCGTGAACGCCATCGTTTTCTCCTCCTACAACGAAACCATGACCCTCAT
GAAAAGAGAAGCGGCGGACTCCAGCAGCATCAGCAGCAAACCCACCTACG
ACCAAGTCTTTGTCGCTGGCTCCGTGGCCGGCGGGCTGCAGTCCTCAGTT
CTCACCCCCACAGAGCTGGTCAAATGCCGCTTGCAGATACAGATGACTTC
TCCCCGATCTCAGGGCTTGGTGCAATGTATTCGGGACGTCTTTAAGGAAA
GGGGTTTCCGGGGTTTTTTCGCGGGATTAGGCCCTACTTTGCTGCGGGAT
TTGCCGGCGTTCGGCTGTTATTTCTCACTGTATGAAATCACAAAGGACGT
GTTGGAGAGCAATGGGCGATCGTTGTGGTTGAGTTCATGTGCGGCGGGGG
GATTGGCCGGGTGCCTGTCGTGGGCCGTGGTCTACCCGATCGACGTCATA
AAAACCACCATGCAGACACAACAAGGGCCAGGGCCTCGGGTGGGCATGCT
CAAGACAGCGACGAGGCTCCTCGAGACAACGGGGCCGGCAGTATTTTTCA
GGGGTATGTCGGTGGCGCTTCTGAGGGCACTGCCGGTAAATTGTATTGTC
TTTCCCGTGTACGAATGGACGGTGGAGTTTTTGGGAAATGTGGATACGGT
GCATAGCACTAGAAGGATTGTCAAGCCGCCGGCACCGGAGAGCAGCGGCG
GCAATAGTAATAGTAATAGCGGAATTCCAGCGACCTGAAGGGGGAGGGAA
GCCAAGGAGAAAAAGATTGTACCATAGTGTGAGCCGACACAGCAGGAGCA
GCAGCAGCTGAAGTAGCAACCGCGAGTGATGCGTAGCCAGAGAAAGGGTG
ATTCTGTACACAAATATTAAGCTTATGTTATATAGATGAACGTGTGACAT
CGCGTGAGGCGGTGAGGGTCAGGCGGCCACTCCTCTCTCCTCCCCCCGAA
ATATATTTGAAAGCTCACACAAAAGCTAGAAATATAAGTACTAAATGAAG
AGCACGCTCAAATACTGACTCACATCAAAATACATCATTCCTTCGTTACG
TAAACCCCGTCAAATTCAACTCCTTGATCACATGCTGATAAGCCCCGAAG
TCCTTCCGCCGCAAGTACTGCATCAAGTTACGCCGCCTCGTCAGCAAAGA
CGTGTACCCACGACGGGCCGCTTTATCTTGCCTGTTTGTTGCGCAATGGT
CTTTGATGTGCTGGATGCGGATCGTCAAACAAGCCACCTGCACAGACGTG
GAGCCTGTGTCGCCTGGTCGGACGCCAAACTTCTCAATTCCCAGCTGCTT
CTCGGCTTGCTTGCGTTCGGGTGCGTCGGCGTTGTCAATGTTTAAAGCCC
GTTCTACTGGCTCGGGGACGGATTGCAGCAGGCTGGCTGGGGTCAGGTAC
TTGTACAAAGGCGTGGCGATGGAGGAAAAGGAGTCTGACGGGGCGGCTGA
GGAGGAGAGCGGGCGACAAGTCGGGGAGGCGGGAGGAGGCAGGGACGAGG
GCGAGGACAAGCGGACCGAATAAAGAAGCCGCTGGCGCCACATAACTTAT
GAGGTCTTGTGTATGTGTACCTGTGTAGTATTCATGTGTGGTCATTGTGT
GAGAAGAGCGATGTGGTCAAGTTGTATGTCGCGTGAGGATCTTCAGGGAT
GATGCTTCATGATGAGTGGCCGATAGGAAGACCAGGAATCCGCCGCCTGC
TGAAGCATTACAGCCTTTGTACTATCGATGCAGCGGTGATGTCAATAACA
TGTGAGCGCTCCCCTTCCAAAATGGCATACGTGCAACGAATGAAAGACGA
GACCCTGCCCGCCCACCGTTTCCGGGCTCCGGGTCACATCTCGCAGCAAG
GGGGAGGTTCGCTTTGAAGCGTACAAATCTACGTCGCTCACTAAAGCTGT
CTAGAGACATGATTCTAATGCTGCACACCATGGTTAGTATCTAGCTCAAC
CAGAATCTGGTACACTTTACGCTGAAATTGCAAAACATGCCCCCTCTTCC
CCCAGAAAAAGCAAAGTCCCCGTTTTTCCACCAAGAGAACAAAATAAATT
G

Coding sequence (CDS) from alignment at scaffold_13:470035..472985-

>mRNA_5460 ID=mRNA_5460|Name=jgi.p|Nanoce1779_2|543153|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at scaffold_13:470035..472985- (Nannochloropsis oceanica)
ATGGACGAGCTCGCTGCGCAGGAGCTCGAGATCCATGAGAATACGGCTGG
GAACATTGTCCCGACTTTGCACTCGTTTATTGGTGGATGTGTAGGTGGCC
TAGTCTCGCTTGTCGCTGGACAGCCGTTTGACACAATCAAGGTCCGCCTT
CAAACTTCAACGAAATTCGCCGGCGCCGGGGACTGTTTTCGGCAGCTGCT
TGCCAACGAAGGCCCTTTGGCACTGTTCAAAGGCATGTCCTCGCCTGTTC
TCTCCGCTTCCCTCGTGAACGCCATCGTTTTCTCCTCCTACAACGAAACC
ATGACCCTCATGAAAAGAGAAGCGGCGGACTCCAGCAGCATCAGCAGCAA
ACCCACCTACGACCAAGTCTTTGTCGCTGGCTCCGTGGCCGGCGGGCTGC
AGTCCTCAGTTCTCACCCCCACAGAGCTGGTCAAATGCCGCTTGCAGATA
CAGATGACTTCTCCCCGATCTCAGGGCTTGGTGCAATGTATTCGGGACGT
CTTTAAGGAAAGGGGTTTCCGGGGTTTTTTCGCGGGATTAGGCCCTACTT
TGCTGCGGGATTTGCCGGCGTTCGGCTGTTATTTCTCACTGTATGAAATC
ACAAAGGACGTGTTGGAGAGCAATGGGCGATCGTTGTGGTTGAGTTCATG
TGCGGCGGGGGGATTGGCCGGGTGCCTGTCGTGGGCCGTGGTCTACCCGA
TCGACGTCATAAAAACCACCATGCAGACACAACAAGGGCCAGGGCCTCGG
GTGGGCATGCTCAAGACAGCGACGAGGCTCCTCGAGACAACGGGGCCGGC
AGTATTTTTCAGGGGTATGTCGGTGGCGCTTCTGAGGGCACTGCCGGTAA
ATTGTATTGTCTTTCCCGTGTACGAATGGACGGTGGAGTTTTTGGGAAAT
GTGGATACGGTGCATAGCACTAGAAGGATTGTCAAGCCGCCGGCACCGGA
GAGCAGCGGCGGCAATAGTAATAGTAATAGCGGAATTCCAGCGACCTGA

Synonyms

Publications