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Properties
| Property Name | Value |
|---|
| TranscriptId | 577739 |
| Track | FilteredModels2 |
| ProteinId | 577653 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:1320634..1321798 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_546 ID=mRNA_546|Name=jgi.p|Nanoce1779_2|577653|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp
ACAGAGGCATGTTGTGGCTGCGGCCAGCCTTGTTCGTGGCCTTGCTGTGC
CTGGTCGTGGTGGATAGCTTCGTGGTACCTTGCCAGCGTCCGGGATTAGG
CCCAACCATGTCGTCGGCGCAGGGACCGGCGTCATCACCCGTGACACGCG
GCGATCTGCTCAAAGCGGGCGGTACCTTTTTCGCCTTCTCCTTCGTTTCC
CCGAACCCCACCTGGGCACGCGGCCTGCCTACGGGACCCAGCAAGTCCGA
GCTCCTGGAGAAAACCAGAAACAAGGACACCGAGGACCCCGTAGAGAAGA
AAGCACGCCTAGCCGCCCTCAGAAAAGAACGCCTGGAACGCCAACGTCAA
CTGGATGCCGAGGAAGAGGCCCGCAAGAACGACCCCAATCGCAAAGAAGT
TGATATTGACGCCAATCTCCGTGCCTCCTACTACTATCCCACTGCCCAAA
AGCGCTACCTCCCCCGCGTCAAGGCCGCTGCGGATGCCCTACCCGCCGCC
AAGGCTAGTCTCCAAGCTGGGCAATGGGACAAAGTCGAAGCTTACGCCAA
CACGGAGGCGGACAATGCCGCCTTGCCCCTCAAGCTGTACGCATCCTCCC
TCACTGGCCAAGGTCTATCTCTGGACGTGTCCTACGTAAAAGTTCTCAAT
ACGCAGGCGGAGGTGTATGGAAAGGAGCTAGAAACATTCAAAAAAGCAGT
CAAAGCCAAGGATGCCGGCAAGGCCCTGTCTACCTTAGACAGAATGGAAG
CTGCGCTTGCTCTGTACCGGAAGACGGCACGGATTGACAAGGCGGATGGG
GGTGTGGGCGAGTTCCCGACAGACAGTAAGTTGGGTGCTAGCTTTGCGAA
CAACAACCCGAGTTTATACAAAAAGCGAGGGAAGGAGTAATTGACAGATT
AGTGGCCACGGAAGGTTTTATAGAGCGCAAGTCCTCAGAAAGCAGGAGGC
ACACGTGTGATTATAGTAGGGATTCAAAAAGAGGGTTGGCACCCTCGAGA
AAACAAAAATACAATGACTAAAGAGATCAACAAGGAAAGGACTTCATGAC back to topprotein sequence of jgi.p|Nanoce1779_2|577653 >mRNA_546-protein ID=mRNA_546-protein|Name=jgi.p|Nanoce1779_2|577653|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MLWLRPALFVALLCLVVVDSFVVPCQRPGLGPTMSSAQGPASSPVTRGDL
LKAGGTFFAFSFVSPNPTWARGLPTGPSKSELLEKTRNKDTEDPVEKKAR
LAALRKERLERQRQLDAEEEARKNDPNRKEVDIDANLRASYYYPTAQKRY
LPRVKAAADALPAAKASLQAGQWDKVEAYANTEADNAALPLKLYASSLTG
QGLSLDVSYVKVLNTQAEVYGKELETFKKAVKAKDAGKALSTLDRMEAAL
ALYRKTARIDKADGGVGEFPTDSKLGASFANNNPSLYKKRGKE* back to topmRNA from alignment at scaffold_3:1320634..1321798- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_546 ID=mRNA_546|Name=jgi.p|Nanoce1779_2|577653|organism=Nannochloropsis oceanica|type=mRNA|length=1165bp|location=Sequence derived from alignment at scaffold_3:1320634..1321798- (Nannochloropsis oceanica)
ACAGAGGCATGTTGTGGCTGCGGCCAGCCTTGTTCGTGGCCTTGCTGTGC
CTGGTCGTGGTGGATAGCTTCGTGGTACCTTGCCAGCGTCCGGGATTAGG
TAAGAGGCAGATAGAAAGAAAGCGGGCCTCTCATCACGGCAAACCTGCGC
TTGTCCCAACCATGCCCACTCATATCGACTGTGTCCCTTTTAATCCTTCA
TCCCAAATACACAGGCCCAACCATGTCGTCGGCGCAGGGACCGGCGTCAT
CACCCGTGACACGCGGCGATCTGCTCAAAGCGGGCGGTACCTTTTTCGCC
TTCTCCTTCGTTTCCCCGAACCCCACCTGGGCACGCGGCCTGCCTACGGG
ACCCAGCAAGTCCGAGCTCCTGGAGAAAACCAGAAACAAGGACACCGAGG
ACCCCGTAGAGAAGAAAGCACGCCTAGCCGCCCTCAGAAAAGAACGCCTG
GAACGCCAACGTCAACTGGATGCCGAGGAAGAGGCCCGCAAGAACGACCC
CAATCGCAAAGAAGTTGATATTGACGCCAATCTCCGTGCCTCCTACTACT
ATCCCACTGCCCAAAAGCGCTACCTCCCCCGCGTCAAGGCCGCTGCGGAT
GCCCTACCCGCCGCCAAGGCTAGTCTCCAAGCTGGGCAATGGGACAAAGT
CGAAGCTTACGCCAACACGGAGGCGGACAATGCCGCCTTGCCCCTCAAGC
TGTACGCATCCTCCCTCACTGGCCAAGGTCTATCTCTGGACGTGTCCTAC
GTAAAAGTTCTCAATACGCAGGCGGAGGTGTATGGAAAGGAGCTAGAAAC
ATTCAAAAAAGCAGTCAAAGCCAAGGATGCCGGCAAGGCCCTGTCTACCT
TAGACAGAATGGAAGCTGCGCTTGCTCTGTACCGGAAGACGGCACGGATT
GACAAGGCGGATGGGGGTGTGGGCGAGTTCCCGACAGACAGTAAGTTGGG
TGCTAGCTTTGCGAACAACAACCCGAGTTTATACAAAAAGCGAGGGAAGG
AGTAATTGACAGATTAGTGGCCACGGAAGGTTTTATAGAGCGCAAGTCCT
CAGAAAGCAGGAGGCACACGTGTGATTATAGTAGGGATTCAAAAAGAGGG
TTGGCACCCTCGAGAAAACAAAAATACAATGACTAAAGAGATCAACAAGG
AAAGGACTTCATGAC back to topCoding sequence (CDS) from alignment at scaffold_3:1320634..1321798- >mRNA_546 ID=mRNA_546|Name=jgi.p|Nanoce1779_2|577653|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_3:1320634..1321798- (Nannochloropsis oceanica)
GCCCAACCATGTCGTCGGCGCAGGGACCGGCGTCATCACCCGTGACACGC
GGCGATCTGCTCAAAGCGGGCGGTACCTTTTTCGCCTTCTCCTTCGTTTC
CCCGAACCCCACCTGGGCACGCGGCCTGCCTACGGGACCCAGCAAGTCCG
AGCTCCTGGAGAAAACCAGAAACAAGGACACCGAGGACCCCGTAGAGAAG
AAAGCACGCCTAGCCGCCCTCAGAAAAGAACGCCTGGAACGCCAACGTCA
ACTGGATGCCGAGGAAGAGGCCCGCAAGAACGACCCCAATCGCAAAGAAG
TTGATATTGACGCCAATCTCCGTGCCTCCTACTACTATCCCACTGCCCAA
AAGCGCTACCTCCCCCGCGTCAAGGCCGCTGCGGATGCCCTACCCGCCGC
CAAGGCTAGTCTCCAAGCTGGGCAATGGGACAAAGTCGAAGCTTACGCCA
ACACGGAGGCGGACAATGCCGCCTTGCCCCTCAAGCTGTACGCATCCTCC
CTCACTGGCCAAGGTCTATCTCTGGACGTGTCCTACGTAAAAGTTCTCAA
TACGCAGGCGGAGGTGTATGGAAAGGAGCTAGAAACATTCAAAAAAGCAG
TCAAAGCCAAGGATGCCGGCAAGGCCCTGTCTACCTTAGACAGAATGGAA
GCTGCGCTTGCTCTGTACCGGAAGACGGCACGGATTGACAAGGCGGATGG
GGGTGTGGGCGAGTTCCCGACAGACAGTAAGTTGGGTGCTAGCTTTGCGA
ACAACAACCCGAGTTTATACAAAAAGCGAGGGAAGGAGTAAATGTTGTGG
CTGCGGCCAGCCTTGTTCGTGGCCTTGCTGTGCCTGGTCGTGGTGGATAG
CTTCGTGGTACCTTGCCAGCGTCCGGGATTAGGCCCAACCATGTCGTCGG
CGCAGGGACCGGCGTCATCACCCGTGACACGCGGCGATCTGCTCAAAGCG
GGCGGTACCTTTTTCGCCTTCTCCTTCGTTTCCCCGAACCCCACCTGGGC
ACGCGGCCTGCCTACGGGACCCAGCAAGTCCGAGCTCCTGGAGAAAACCA
GAAACAAGGACACCGAGGACCCCGTAGAGAAGAAAGCACGCCTAGCCGCC
CTCAGAAAAGAACGCCTGGAACGCCAACGTCAACTGGATGCCGAGGAAGA
GGCCCGCAAGAACGACCCCAATCGCAAAGAAGTTGATATTGACGCCAATC
TCCGTGCCTCCTACTACTATCCCACTGCCCAAAAGCGCTACCTCCCCCGC
GTCAAGGCCGCTGCGGATGCCCTACCCGCCGCCAAGGCTAGTCTCCAAGC
TGGGCAATGGGACAAAGTCGAAGCTTACGCCAACACGGAGGCGGACAATG
CCGCCTTGCCCCTCAAGCTGTACGCATCCTCCCTCACTGGCCAAGGTCTA
TCTCTGGACGTGTCCTACGTAAAAGTTCTCAATACGCAGGCGGAGGTGTA
TGGAAAGGAGCTAGAAACATTCAAAAAAGCAGTCAAAGCCAAGGATGCCG
GCAAGGCCCTGTCTACCTTAGACAGAATGGAAGCTGCGCTTGCTCTGTAC
CGGAAGACGGCACGGATTGACAAGGCGGATGGGGGTGTGGGCGAGTTCCC
GACAGACAGTAAGTTGGGTGCTAGCTTTGCGAACAACAACCCGAGTTTAT
ACAAAAAGCGAGGGAAGGAGTAAATGTTGTGGCTGCGGCCAGCCTTGTTC
GTGGCCTTGCTGTGCCTGGTCGTGGTGGATAGCTTCGTGGTACCTTGCCA
GCGTCCGGGATTAG back to top
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