jgi.p|Nanoce1779_2|592586, mRNA_5459 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592586
Unique NamemRNA_5459
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length937
Alignment locationscaffold_13:470512..471737 +

Link to JBrowse

Properties
Property NameValue
TranscriptId592672
TrackFilteredModels2
ProteinId592586
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:470512..471737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592586gene_5459Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592586mRNA_5459-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5459CDS_5459Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5459 ID=mRNA_5459|Name=jgi.p|Nanoce1779_2|592586|organism=Nannochloropsis oceanica|type=mRNA|length=937bp
ACAGGTACACATACACAAGACCTCATAAGTTATGTGGCGCCAGCGGCTTC
TTTATTCGGTCCGCTTGTCCTCGCCCTCGTCCCTGCCTCCTCCCGCCTCC
CCGACTTGTCGCCCGCTCTCCTCCTCAGCCGCCCCGTCAGACTCCTTTTC
CTCCATCGCCACGCCTTTGTACAAGTACCTGACCCCAGCCAGCCTGCTGC
AATCCGTCCCCGAGCCAGTAGAACGGGCTTTAAACATTGACAACGCCGAC
GCACCCGAACGCAAGCAAGCCGAGAAGCAGCTGGGAATTGAGAAGTTTGG
CGTCCGACCAGGCGACACAGGCTCCACGTCTGTGCAGGTGGCTTGTTTGA
CGATCCGCATCCAGCACATCAAAGACCATTGCGCAACAAACAGGCAAGAT
AAAGCGGCCCGTCGTGGGTACACGTCTTTGCTGACGAGGCGGCGTAACTT
GATGCAGTACTTGCGGCGGAAGGACTTCGGGGCTTATCAGCATGTGATCA
AGGAGTTGAATTTGACGGGGTTTACGTAACGAAGGAATGATGTATTTTGA
TGTCGCTGGAATTCCGCTATTACTATTACTATTGCCGCCGCTGCTCTCCG
GTGCCGGCGGCTTGACAATCCTTCTAGTGCTATGCACCGTATCCACATTT
CCCAAAAACTCCACCGTCCATTCGTACACGGGAAAGACAATACAATTTAC
CGGCAGTGCCCTCAGAAGCGCCACCGACATACCCCTGAAAAATACTGCCG
GCCCCGTTGTCTCGAGGAGCCTCGTCGCTGTCTTGAGCATGCCCACCCGA
GGCCCTGGCCCTTGTTGTGTCTGCATGGTGGTTTTTATGACGTCGATCGG
GTAGACCACGGCCCACGACAGGCACCCGGCCAATCCCCCCGCCGCACATG
AACTCAACCACAACGATCGCCCATTGCTCTCCAACAC
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protein sequence of jgi.p|Nanoce1779_2|592586

>mRNA_5459-protein ID=mRNA_5459-protein|Name=jgi.p|Nanoce1779_2|592586|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MWRQRLLYSVRLSSPSSLPPPASPTCRPLSSSAAPSDSFSSIATPLYKYL
TPASLLQSVPEPVERALNIDNADAPERKQAEKQLGIEKFGVRPGDTGSTS
VQVACLTIRIQHIKDHCATNRQDKAARRGYTSLLTRRRNLMQYLRRKDFG
AYQHVIKELNLTGFT*
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mRNA from alignment at scaffold_13:470512..471737+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5459 ID=mRNA_5459|Name=jgi.p|Nanoce1779_2|592586|organism=Nannochloropsis oceanica|type=mRNA|length=1226bp|location=Sequence derived from alignment at scaffold_13:470512..471737+ (Nannochloropsis oceanica)
ACAGGTACACATACACAAGACCTCATAAGTTATGTGGCGCCAGCGGCTTC
TTTATTCGGTCCGCTTGTCCTCGCCCTCGTCCCTGCCTCCTCCCGCCTCC
CCGACTTGTCGCCCGCTCTCCTCCTCAGCCGCCCCGTCAGACTCCTTTTC
CTCCATCGCCACGCCTTTGTACAAGTACCTGACCCCAGCCAGCCTGCTGC
AATCCGTCCCCGAGCCAGTAGAACGGGCTTTAAACATTGACAACGCCGAC
GCACCCGAACGCAAGCAAGCCGAGAAGCAGCTGGGAATTGAGAAGTTTGG
CGTCCGACCAGGCGACACAGGCTCCACGTCTGTGCAGGTGGCTTGTTTGA
CGATCCGCATCCAGCACATCAAAGACCATTGCGCAACAAACAGGCAAGAT
AAAGCGGCCCGTCGTGGGTACACGTCTTTGCTGACGAGGCGGCGTAACTT
GATGCAGTACTTGCGGCGGAAGGACTTCGGGGCTTATCAGCATGTGATCA
AGGAGTTGAATTTGACGGGGTTTACGTAACGAAGGAATGATGTATTTTGA
TGTGAGTCAGTATTTGAGCGTGCTCTTCATTTAGTACTTATATTTCTAGC
TTTTGTGTGAGCTTTCAAATATATTTCGGGGGGAGGAGAGAGGAGTGGCC
GCCTGACCCTCACCGCCTCACGCGATGTCACACGTTCATCTATATAACAT
AAGCTTAATATTTGTGTACAGAATCACCCTTTCTCTGGCTACGCATCACT
CGCGGTTGCTACTTCAGCTGCTGCTGCTCCTGCTGTGTCGGCTCACACTA
TGGTACAATCTTTTTCTCCTTGGCTTCCCTCCCCCTTCAGGTCGCTGGAA
TTCCGCTATTACTATTACTATTGCCGCCGCTGCTCTCCGGTGCCGGCGGC
TTGACAATCCTTCTAGTGCTATGCACCGTATCCACATTTCCCAAAAACTC
CACCGTCCATTCGTACACGGGAAAGACAATACAATTTACCGGCAGTGCCC
TCAGAAGCGCCACCGACATACCCCTGAAAAATACTGCCGGCCCCGTTGTC
TCGAGGAGCCTCGTCGCTGTCTTGAGCATGCCCACCCGAGGCCCTGGCCC
TTGTTGTGTCTGCATGGTGGTTTTTATGACGTCGATCGGGTAGACCACGG
CCCACGACAGGCACCCGGCCAATCCCCCCGCCGCACATGAACTCAACCAC
AACGATCGCCCATTGCTCTCCAACAC
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Coding sequence (CDS) from alignment at scaffold_13:470512..471737+

>mRNA_5459 ID=mRNA_5459|Name=jgi.p|Nanoce1779_2|592586|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_13:470512..471737+ (Nannochloropsis oceanica)
ATGTGGCGCCAGCGGCTTCTTTATTCGGTCCGCTTGTCCTCGCCCTCGTC
CCTGCCTCCTCCCGCCTCCCCGACTTGTCGCCCGCTCTCCTCCTCAGCCG
CCCCGTCAGACTCCTTTTCCTCCATCGCCACGCCTTTGTACAAGTACCTG
ACCCCAGCCAGCCTGCTGCAATCCGTCCCCGAGCCAGTAGAACGGGCTTT
AAACATTGACAACGCCGACGCACCCGAACGCAAGCAAGCCGAGAAGCAGC
TGGGAATTGAGAAGTTTGGCGTCCGACCAGGCGACACAGGCTCCACGTCT
GTGCAGGTGGCTTGTTTGACGATCCGCATCCAGCACATCAAAGACCATTG
CGCAACAAACAGGCAAGATAAAGCGGCCCGTCGTGGGTACACGTCTTTGC
TGACGAGGCGGCGTAACTTGATGCAGTACTTGCGGCGGAAGGACTTCGGG
GCTTATCAGCATGTGATCAAGGAGTTGAATTTGACGGGGTTTACGTAA
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Synonyms
Publications