jgi.p|Nanoce1779_2|556551, mRNA_5455 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|556551
Unique Name	mRNA_5455
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1912
Alignment location	scaffold_13:462999..465473 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	556637
Track	FilteredModels2
ProteinId	556551

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:462999..465473 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|556551	gene_5455	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|556551	mRNA_5455-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5455	CDS_5455	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:462999..465473+
coding sequence from alignment at scaffold_13:462999..465473+

mRNA sequence

>mRNA_5455 ID=mRNA_5455|Name=jgi.p|Nanoce1779_2|556551|organism=Nannochloropsis oceanica|type=mRNA|length=1912bp
AGAGGGCGTTTCCTGCTTCTTTGGTAGCCTCCGCCACCGAAGCAAAAAAG
AGAACCCAGCGTGGCTAATTTTTCTACCCACCACACCCAGCACCCGCTCT
CCGCCCTACCCACCAAAGTCAGCCATGAAGCGTGTCGCCTCCATCAACAC
CATCAACCGCTTGACCAAAGTCCACGAAGGAGAACATGACACGGTGGATT
ATCGCGTGCATTCCCTCGACCATAACGAGGAGCGCATCTCCCTCTGGCAT
GAGCTGCCCCTCTTTGCCGTTGACGACGATGCCCGACCCACAGGCGCACT
CAACTTCATTTGCGAGATCCCCAAGTTCACTCGCCGCAAGTTCGAAATCT
GCACCACCGAAGCCGGGAATCCTATAAAGCAAGACGAAAAGAACGGCAAG
CCTCGCGTGTTTTCGAAGGGCGACATTTTCTTTAACTATGGTTGCTTCCC
CCGGACCTGGGAAGACCCCAAACATGTGCCCGAGGACGTAGGGGTGGGGG
GGGATAATGACCCTCTCGACGTTTGTGAGATTGGCCTGCGACAGATCCCA
ACGGGGGCTGTGCGGCAGGTGAAGGTGCTGGGTGTGTTGTGCCTGATCGA
TGATGGCGAGGCAGACTGGAAGGTGATCGCGATTGACGAGGAGGACCGAT
GGGCGGGGGAACTGAATGATGTCCAGGATGTGGAGAGGCTGCTGCCGGGG
ACGTTGCACGCGATAAGGGAGTGGTTCAGGACGTACAAGATTCCAGACGG
GAAGCCGGAGAACAGGTTTGCGCTGGGGGAGAGGTTTATGGGCGTTAAAT
ATACCATGCGGGTGATCCGGGAGACGCACGAGGCCTGGAAACGCCTGATC
AAGTCAAGTGGAGGGATGGGGGGCGTTGGGGAGGGGAGTAACGGGTCGTT
GGCGCGAAATTTGTCGGTACCGAGTTTGGAGAAGTTGAATATGGATAGCG
ATCAGCAGGCAGTGTTTGCGTTGCTGGGGGAGGAGGAAGGGGGGGGGGGA
AATGAGGGGGGAGGGCAGGGGGCGAGGCGGGCAGGAGAGGATGCAACGGC
GGTGGTGGGGGGCTTAAATGGCGTGGGAGGGGTGGATGGGCAGTCAGGGG
GGAGGGAAGGGTCAAGGACCGTGACGCCGGTTGCGGAGGGGGCGTTAGAG
TTTTAGGGCAGGTTGTGGGTGTAATCGAGGTCGAGAGCGACGGGGGGGTT
GAGAGAAGGGGATTCATCGATGCTGTTGCGATTGGTGGGCGGAAAGGGGG
GGAAGGCGGCTCAAGGTTTGCGCCGGGTTGCTGTGTTTGGGAGGAGGGAG
GGAGGAGAGAGGAGGGATGTCAGGATGTCAGAGAGGGAAAGAATAGGGTC
GAGTAGGTCTTATCTGACTGATACCACTGACCTCTATTTCTCTCCCCCTT
TTATTCTGTTCTTCGTCTTTGGCCATTTCGCTGTGTACGATCCAGAACGG
TGCACGGGAATAGAAAGACCACCAATGGAGGAGAGATGATTAGATCGAGG
TAAAGAATGAGAAAGAACGACGAGAAGAGGGGTTGAAAGGGACCGACAGG
AAGAGAAAGCCATGGAAGCAGGAAAGTCGCGTTATGAATGGGCCCTGCGC
GAGTTTCCTTCCCTTTTTCTCTCGTTCCCTCCCCTAAACCCTCTTCTCAT
CCCTTTCGCCGGTCCATGATCGTTCGTTCATTCATTCGTCCCAATGAAAT
GAATTGCAAGTAAACATTATGATTTTGGAAGAAGCATTTCGTCTGCAAGG
AGGTGGATCGCGGACAGGCAAGGGAGATACAAGGTGAGGTAAGGGGGGGG
AAGAAAGCTTGCATGTGTGTAAAGAACGGACGATGACGAAGCCGAGCAGA
CGGCCTATGCGAAAATAGAAAATATCGAATTTAATCAGGGAATAGGAGGG
AGATAATCCGTG

protein sequence of jgi.p|Nanoce1779_2|556551

>mRNA_5455-protein ID=mRNA_5455-protein|Name=jgi.p|Nanoce1779_2|556551|organism=Nannochloropsis oceanica|type=polypeptide|length=344bp
MKRVASINTINRLTKVHEGEHDTVDYRVHSLDHNEERISLWHELPLFAVD
DDARPTGALNFICEIPKFTRRKFEICTTEAGNPIKQDEKNGKPRVFSKGD
IFFNYGCFPRTWEDPKHVPEDVGVGGDNDPLDVCEIGLRQIPTGAVRQVK
VLGVLCLIDDGEADWKVIAIDEEDRWAGELNDVQDVERLLPGTLHAIREW
FRTYKIPDGKPENRFALGERFMGVKYTMRVIRETHEAWKRLIKSSGGMGG
VGEGSNGSLARNLSVPSLEKLNMDSDQQAVFALLGEEEGGGGNEGGGQGA
RRAGEDATAVVGGLNGVGGVDGQSGGREGSRTVTPVAEGALEF*

mRNA from alignment at scaffold_13:462999..465473+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5455 ID=mRNA_5455|Name=jgi.p|Nanoce1779_2|556551|organism=Nannochloropsis oceanica|type=mRNA|length=2475bp|location=Sequence derived from alignment at scaffold_13:462999..465473+ (Nannochloropsis oceanica)
AGAGGGCGTTTCCTGCTTCTTTGGTAGCCTCCGCCACCGAAGCAAAAAAG
AGAACCCAGCGTGGCTAATTTTTCTACCCACCACACCCAGCACCCGCTCT
CCGCCCTACCCACCAAAGTCAGCCATGAAGCGTGTCGCCTCCATCAACAC
CATCAACCGCTTGACCAAAGTCCACGTACGTAAAAATTGTATAGAAGACA
TCGTGAGACAACCGGGTGGGATGGTGAGGGAGGCGTAGAGAGGGTGGTGG
TGGCGTGGCGCTCGGGCACGATCGGAGGGCGCTGTGCATGCCGAGCGAAG
TGAGGGTGTGAGCAAATAAAAAATCAACACACTTTTTTCAATAGCTCTTA
ATCAACCTCTATGCGTAGTGCTAGAATACATGGATGAACGACAAACGCCA
AGAACGGCAGGCTCGGAACAATTATCCCTACGATTCCTGCTGTCTGACAA
AACGAACCTACGCCATTCTCAACCCCATACACCCGCAAATCCTCTGCTCC
CCACCGATTTACCCTACATATAGGAAGGAGAACATGACACGGTGGATTAT
CGCGTGCATTCCCTCGACCATAACGAGGAGCGCATCTCCCTCTGGCATGA
GCTGCCCCTCTTTGCCGTTGACGACGATGCCCGACCCACAGGCGCACTCA
ACTTCATTTGCGAGATGTACGTAGCTTCTTACATCTTTCGACTCGTCCGG
GGGTAGCCCTGTAGGGAACTGTGCCTTTTCCTCTCTGCTCTTTTATTTCC
TCGAGAGTATGTGCTCCTCATTCACCCATCCCTCTCCCTTTTCTTTCTTC
CCTTCCTCCCCTCCTTCCCTCCAGCCCCAAGTTCACTCGCCGCAAGTTCG
AAATCTGCACCACCGAAGCCGGGAATCCTATAAAGCAAGACGAAAAGAAC
GGCAAGCCTCGCGTGTTTTCGAAGGGCGACATTTTCTTTAACTATGGTTG
CTTCCCCCGGACCTGGGAAGACCCCAAACATGTGCCCGAGGACGTAGGGG
TGGGGGGGGATAATGACCCTCTCGACGTTTGTGAGATTGGCCTGCGACAG
ATCCCAACGGGGGCTGTGCGGCAGGTGAAGGTGCTGGGTGTGTTGTGCCT
GATCGATGATGGCGAGGCAGACTGGAAGGTGATCGCGATTGACGAGGAGG
ACCGATGGGCGGGGGAACTGAATGATGTCCAGGATGTGGAGAGGCTGCTG
CCGGGGACGTTGCACGCGATAAGGGAGTGGTTCAGGACGTACAAGATTCC
AGACGGGAAGCCGGAGAACAGGTTTGCGCTGGGGGAGAGGTTTATGGGCG
TTAAATATACCATGCGGGTGATCCGGGAGACGCACGAGGCCTGGAAACGC
CTGATCAAGTCAAGTGGAGGGATGGGGGGCGTTGGGGAGGGGAGTAACGG
GTCGTTGGCGCGAAATTTGTCGGTACCGAGTTTGGAGAAGTTGAATATGG
ATAGCGATCAGCAGGCAGTGTTTGCGTTGCTGGGTCCGGACGGGACACCG
CGGGTGCCAGGGGCAGTAGGGCCATTGACGTGTCTGGTAGGGGAGGAGGA
AGGGGGGGGGGGAAATGAGGGGGGAGGGCAGGGGGCGAGGCGGGCAGGAG
AGGATGCAACGGCGGTGGTGGGGGGCTTAAATGGCGTGGGAGGGGTGGAT
GGGCAGTCAGGGGGGAGGGAAGGGTCAAGGACCGTGACGCCGGTTGCGGA
GGGGGCGTTAGAGTTTTAGGGCAGGTTGTGGGTGTAATCGAGGTCGAGAG
CGACGGGGGGGTTGAGAGAAGGGGATTCATCGATGCTGTTGCGATTGGTG
GGCGGAAAGGGGGGGAAGGCGGCTCAAGGTTTGCGCCGGGTTGCTGTGTT
TGGGAGGAGGGAGGGAGGAGAGAGGAGGGATGTCAGGATGTCAGAGAGGG
AAAGAATAGGGTCGAGTAGGTCTTATCTGACTGATACCACTGACCTCTAT
TTCTCTCCCCCTTTTATTCTGTTCTTCGTCTTTGGCCATTTCGCTGTGTA
CGATCCAGAACGGTGCACGGGAATAGAAAGACCACCAATGGAGGAGAGAT
GATTAGATCGAGGTAAAGAATGAGAAAGAACGACGAGAAGAGGGGTTGAA
AGGGACCGACAGGAAGAGAAAGCCATGGAAGCAGGAAAGTCGCGTTATGA
ATGGGCCCTGCGCGAGTTTCCTTCCCTTTTTCTCTCGTTCCCTCCCCTAA
ACCCTCTTCTCATCCCTTTCGCCGGTCCATGATCGTTCGTTCATTCATTC
GTCCCAATGAAATGAATTGCAAGTAAACATTATGATTTTGGAAGAAGCAT
TTCGTCTGCAAGGAGGTGGATCGCGGACAGGCAAGGGAGATACAAGGTGA
GGTAAGGGGGGGGAAGAAAGCTTGCATGTGTGTAAAGAACGGACGATGAC
GAAGCCGAGCAGACGGCCTATGCGAAAATAGAAAATATCGAATTTAATCA
GGGAATAGGAGGGAGATAATCCGTG

Coding sequence (CDS) from alignment at scaffold_13:462999..465473+

>mRNA_5455 ID=mRNA_5455|Name=jgi.p|Nanoce1779_2|556551|organism=Nannochloropsis oceanica|type=CDS|length=4128bp|location=Sequence derived from alignment at scaffold_13:462999..465473+ (Nannochloropsis oceanica)
ATGAAGCGTGTCGCCTCCATCAACACCATCAACCGCTTGACCAAAGTCCA
CGAAGGAGAACATGACACGGTGGATTATCGCGTGCATTCCCTCGACCATA
ACGAGGAGCGCATCTCCCTCTGGCATGAGCTGCCCCTCTTTGCCGTTGAC
GACGATGCCCGACCCACAGGCGCACTCAACTTCATTTGCGAGATCCCCAA
GTTCACTCGCCGCAAGTTCGAAATCTGCACCACCGAAGCCGGGAATCCTA
TAAAGCAAGACGAAAAGAACGGCAAGCCTCGCGTGTTTTCGAAGGGCGAC
ATTTTCTTTAACTATGGTTGCTTCCCCCGGACCTGGGAAGACCCCAAACA
TGTGCCCGAGGACGTAGGGGTGGGGGGGGATAATGACCCTCTCGACGTTT
GTGAGATTGGCCTGCGACAGATCCCAACGGGGGCTGTGCGGCAGGTGAAG
GTGCTGGGTGTGTTGTGCCTGATCGATGATGGCGAGGCAGACTGGAAGGT
GATCGCGATTGACGAGGAGGACCGATGGGCGGGGGAACTGAATGATGTCC
AGGATGTGGAGAGGCTGCTGCCGGGGACGTTGCACGCGATAAGGGAGTGG
TTCAGGACGTACAAGATTCCAGACGGGAAGCCGGAGAACAGGTTTGCGCT
GGGGGAGAGGTTTATGGGCGTTAAATATACCATGCGGGTGATCCGGGAGA
CGCACGAGGCCTGGAAACGCCTGATCAAGTCAAGTGGAGGGATGGGGGGC
GTTGGGGAGGGGAGTAACGGGTCGTTGGCGCGAAATTTGTCGGTACCGAG
TTTGGAGAAGTTGAATATGGATAGCGATCAGCAGGCAGTGTTTGCGTTGC
TGGGGGAGGAGGAAGGGGGGGGGGGAAATGAGGGGGGAGGGCAGGGGGCG
AGGCGGGCAGGAGAGGATGCAACGGCGGTGGTGGGGGGCTTAAATGGCGT
GGGAGGGGTGGATGGGCAGTCAGGGGGGAGGGAAGGGTCAAGGACCGTGA
CGCCGGTTGCGGAGGGGGCGTTAGAGTTTTAGATGAAGCGTGTCGCCTCC
ATCAACACCATCAACCGCTTGACCAAAGTCCACGAAGGAGAACATGACAC
GGTGGATTATCGCGTGCATTCCCTCGACCATAACGAGGAGCGCATCTCCC
TCTGGCATGAGCTGCCCCTCTTTGCCGTTGACGACGATGCCCGACCCACA
GGCGCACTCAACTTCATTTGCGAGATCCCCAAGTTCACTCGCCGCAAGTT
CGAAATCTGCACCACCGAAGCCGGGAATCCTATAAAGCAAGACGAAAAGA
ACGGCAAGCCTCGCGTGTTTTCGAAGGGCGACATTTTCTTTAACTATGGT
TGCTTCCCCCGGACCTGGGAAGACCCCAAACATGTGCCCGAGGACGTAGG
GGTGGGGGGGGATAATGACCCTCTCGACGTTTGTGAGATTGGCCTGCGAC
AGATCCCAACGGGGGCTGTGCGGCAGGTGAAGGTGCTGGGTGTGTTGTGC
CTGATCGATGATGGCGAGGCAGACTGGAAGGTGATCGCGATTGACGAGGA
GGACCGATGGGCGGGGGAACTGAATGATGTCCAGGATGTGGAGAGGCTGC
TGCCGGGGACGTTGCACGCGATAAGGGAGTGGTTCAGGACGTACAAGATT
CCAGACGGGAAGCCGGAGAACAGGTTTGCGCTGGGGGAGAGGTTTATGGG
CGTTAAATATACCATGCGGGTGATCCGGGAGACGCACGAGGCCTGGAAAC
GCCTGATCAAGTCAAGTGGAGGGATGGGGGGCGTTGGGGAGGGGAGTAAC
GGGTCGTTGGCGCGAAATTTGTCGGTACCGAGTTTGGAGAAGTTGAATAT
GGATAGCGATCAGCAGGCAGTGTTTGCGTTGCTGGGGGAGGAGGAAGGGG
GGGGGGGAAATGAGGGGGGAGGGCAGGGGGCGAGGCGGGCAGGAGAGGAT
GCAACGGCGGTGGTGGGGGGCTTAAATGGCGTGGGAGGGGTGGATGGGCA
GTCAGGGGGGAGGGAAGGGTCAAGGACCGTGACGCCGGTTGCGGAGGGGG
CGTTAGAGTTTTAGATGAAGCGTGTCGCCTCCATCAACACCATCAACCGC
TTGACCAAAGTCCACGAAGGAGAACATGACACGGTGGATTATCGCGTGCA
TTCCCTCGACCATAACGAGGAGCGCATCTCCCTCTGGCATGAGCTGCCCC
TCTTTGCCGTTGACGACGATGCCCGACCCACAGGCGCACTCAACTTCATT
TGCGAGATCCCCAAGTTCACTCGCCGCAAGTTCGAAATCTGCACCACCGA
AGCCGGGAATCCTATAAAGCAAGACGAAAAGAACGGCAAGCCTCGCGTGT
TTTCGAAGGGCGACATTTTCTTTAACTATGGTTGCTTCCCCCGGACCTGG
GAAGACCCCAAACATGTGCCCGAGGACGTAGGGGTGGGGGGGGATAATGA
CCCTCTCGACGTTTGTGAGATTGGCCTGCGACAGATCCCAACGGGGGCTG
TGCGGCAGGTGAAGGTGCTGGGTGTGTTGTGCCTGATCGATGATGGCGAG
GCAGACTGGAAGGTGATCGCGATTGACGAGGAGGACCGATGGGCGGGGGA
ACTGAATGATGTCCAGGATGTGGAGAGGCTGCTGCCGGGGACGTTGCACG
CGATAAGGGAGTGGTTCAGGACGTACAAGATTCCAGACGGGAAGCCGGAG
AACAGGTTTGCGCTGGGGGAGAGGTTTATGGGCGTTAAATATACCATGCG
GGTGATCCGGGAGACGCACGAGGCCTGGAAACGCCTGATCAAGTCAAGTG
GAGGGATGGGGGGCGTTGGGGAGGGGAGTAACGGGTCGTTGGCGCGAAAT
TTGTCGGTACCGAGTTTGGAGAAGTTGAATATGGATAGCGATCAGCAGGC
AGTGTTTGCGTTGCTGGGGGAGGAGGAAGGGGGGGGGGGAAATGAGGGGG
GAGGGCAGGGGGCGAGGCGGGCAGGAGAGGATGCAACGGCGGTGGTGGGG
GGCTTAAATGGCGTGGGAGGGGTGGATGGGCAGTCAGGGGGGAGGGAAGG
GTCAAGGACCGTGACGCCGGTTGCGGAGGGGGCGTTAGAGTTTTAGATGA
AGCGTGTCGCCTCCATCAACACCATCAACCGCTTGACCAAAGTCCACGAA
GGAGAACATGACACGGTGGATTATCGCGTGCATTCCCTCGACCATAACGA
GGAGCGCATCTCCCTCTGGCATGAGCTGCCCCTCTTTGCCGTTGACGACG
ATGCCCGACCCACAGGCGCACTCAACTTCATTTGCGAGATCCCCAAGTTC
ACTCGCCGCAAGTTCGAAATCTGCACCACCGAAGCCGGGAATCCTATAAA
GCAAGACGAAAAGAACGGCAAGCCTCGCGTGTTTTCGAAGGGCGACATTT
TCTTTAACTATGGTTGCTTCCCCCGGACCTGGGAAGACCCCAAACATGTG
CCCGAGGACGTAGGGGTGGGGGGGGATAATGACCCTCTCGACGTTTGTGA
GATTGGCCTGCGACAGATCCCAACGGGGGCTGTGCGGCAGGTGAAGGTGC
TGGGTGTGTTGTGCCTGATCGATGATGGCGAGGCAGACTGGAAGGTGATC
GCGATTGACGAGGAGGACCGATGGGCGGGGGAACTGAATGATGTCCAGGA
TGTGGAGAGGCTGCTGCCGGGGACGTTGCACGCGATAAGGGAGTGGTTCA
GGACGTACAAGATTCCAGACGGGAAGCCGGAGAACAGGTTTGCGCTGGGG
GAGAGGTTTATGGGCGTTAAATATACCATGCGGGTGATCCGGGAGACGCA
CGAGGCCTGGAAACGCCTGATCAAGTCAAGTGGAGGGATGGGGGGCGTTG
GGGAGGGGAGTAACGGGTCGTTGGCGCGAAATTTGTCGGTACCGAGTTTG
GAGAAGTTGAATATGGATAGCGATCAGCAGGCAGTGTTTGCGTTGCTGGG
GGAGGAGGAAGGGGGGGGGGGAAATGAGGGGGGAGGGCAGGGGGCGAGGC
GGGCAGGAGAGGATGCAACGGCGGTGGTGGGGGGCTTAAATGGCGTGGGA
GGGGTGGATGGGCAGTCAGGGGGGAGGGAAGGGTCAAGGACCGTGACGCC
GGTTGCGGAGGGGGCGTTAGAGTTTTAG

Synonyms

Publications