jgi.p|Nanoce1779_2|592558, mRNA_5452 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592558
Unique NamemRNA_5452
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length953
Alignment locationscaffold_13:456883..457835 -

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Properties
Property NameValue
TranscriptId592644
TrackFilteredModels2
ProteinId592558
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:456883..457835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592558gene_5452Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592558mRNA_5452-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5452CDS_5452Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5452 ID=mRNA_5452|Name=jgi.p|Nanoce1779_2|592558|organism=Nannochloropsis oceanica|type=mRNA|length=953bp
GGGGATGAGAGAACGGTTTGCGAGGTTGATGCAGATGAACCAGCTGTTGA
ACTTGGATGTACCGACGGATATTGTGGATGTGTTTGGGGGTCCTTTGAGC
AAATTGACGTCAGAGGAAGCCTTGAACGTGATGAAATTAAGGGTGGATTG
GGAAGAGACGGAGATAGGGAAGGCGCAGCAGCATTTGTTAACGGCCTCGT
CGGGGGCGGGCGGAACGGGGGATGGCGGGTTCTTGTAGGGGAAGATAGCA
AAAGTTGAGAATGTCGATGTGGGAAAAGGACATTAATCAAGAATTGGATG
ATGGGATTTCATTATTTGATGATATTGCTACTTGTTTTTATTCACTTACT
ATTATGTGGTTCGCGGACTTTTTTGGGGGCGCTATCAACCCAAAATCCAC
GGAGATGCCCTATAACTGTGCACAGCGAGACCTGGTGCTGTGGCACGGCA
AAAGGTGTGTCTTGGAAGGGAACGATGGAGATAGAGGGAAGAAGAACACA
ACGCAAGGGCACGGGGAAGAGAGAAGAAAAACGCAACTCAAATCGTCCTG
AAAGGCCGCAGGTCTTCAACCTTCTTCGCGTCTTCGTTTTCACCACACAA
CAGTTTCTCGACAAAGCACGGCGCATCATCTACATCTACGCACCAACGCG
ACAGGTGGTCTAGAGAGCCAAACCTGTCGTCAACCCTCCCACCCTCCACC
AAAGGGGGGGACCGCCCTATCCATATGGTCACTGCGCACACAGCCTCGAT
ATGGGCAGGATTGCGCGTTGTGGGCTTCCCCCGATCGTTCAGGTCCCCAG
GCCGGCTGACGCATCGGCCCTCACACGATTCTTATCTCATATGCCGTCAG
TCGTTGGAGTCGACTCGACGCCATATCCTTGACCATAACTTGAATGAAAC
AATTAAGGAGATCGGCTCGCTTCTGGCTAAAATTTAATGTGACGGTTCCA
ACC
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protein sequence of jgi.p|Nanoce1779_2|592558

>mRNA_5452-protein ID=mRNA_5452-protein|Name=jgi.p|Nanoce1779_2|592558|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MMGFHYLMILLLVFIHLLLCGSRTFLGALSTQNPRRCPITVHSETWCCGT
AKGVSWKGTMEIEGRRTQRKGTGKREEKRNSNRPERPQVFNLLRVFVFTT
QQFLDKARRIIYIYAPTRQVV*
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mRNA from alignment at scaffold_13:456883..457835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5452 ID=mRNA_5452|Name=jgi.p|Nanoce1779_2|592558|organism=Nannochloropsis oceanica|type=mRNA|length=953bp|location=Sequence derived from alignment at scaffold_13:456883..457835- (Nannochloropsis oceanica)
GGGGATGAGAGAACGGTTTGCGAGGTTGATGCAGATGAACCAGCTGTTGA
ACTTGGATGTACCGACGGATATTGTGGATGTGTTTGGGGGTCCTTTGAGC
AAATTGACGTCAGAGGAAGCCTTGAACGTGATGAAATTAAGGGTGGATTG
GGAAGAGACGGAGATAGGGAAGGCGCAGCAGCATTTGTTAACGGCCTCGT
CGGGGGCGGGCGGAACGGGGGATGGCGGGTTCTTGTAGGGGAAGATAGCA
AAAGTTGAGAATGTCGATGTGGGAAAAGGACATTAATCAAGAATTGGATG
ATGGGATTTCATTATTTGATGATATTGCTACTTGTTTTTATTCACTTACT
ATTATGTGGTTCGCGGACTTTTTTGGGGGCGCTATCAACCCAAAATCCAC
GGAGATGCCCTATAACTGTGCACAGCGAGACCTGGTGCTGTGGCACGGCA
AAAGGTGTGTCTTGGAAGGGAACGATGGAGATAGAGGGAAGAAGAACACA
ACGCAAGGGCACGGGGAAGAGAGAAGAAAAACGCAACTCAAATCGTCCTG
AAAGGCCGCAGGTCTTCAACCTTCTTCGCGTCTTCGTTTTCACCACACAA
CAGTTTCTCGACAAAGCACGGCGCATCATCTACATCTACGCACCAACGCG
ACAGGTGGTCTAGAGAGCCAAACCTGTCGTCAACCCTCCCACCCTCCACC
AAAGGGGGGGACCGCCCTATCCATATGGTCACTGCGCACACAGCCTCGAT
ATGGGCAGGATTGCGCGTTGTGGGCTTCCCCCGATCGTTCAGGTCCCCAG
GCCGGCTGACGCATCGGCCCTCACACGATTCTTATCTCATATGCCGTCAG
TCGTTGGAGTCGACTCGACGCCATATCCTTGACCATAACTTGAATGAAAC
AATTAAGGAGATCGGCTCGCTTCTGGCTAAAATTTAATGTGACGGTTCCA
ACC
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Coding sequence (CDS) from alignment at scaffold_13:456883..457835-

>mRNA_5452 ID=mRNA_5452|Name=jgi.p|Nanoce1779_2|592558|organism=Nannochloropsis oceanica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_13:456883..457835- (Nannochloropsis oceanica)
ATGATGGGATTTCATTATTTGATGATATTGCTACTTGTTTTTATTCACTT
ACTATTATGTGGTTCGCGGACTTTTTTGGGGGCGCTATCAACCCAAAATC
CACGGAGATGCCCTATAACTGTGCACAGCGAGACCTGGTGCTGTGGCACG
GCAAAAGGTGTGTCTTGGAAGGGAACGATGGAGATAGAGGGAAGAAGAAC
ACAACGCAAGGGCACGGGGAAGAGAGAAGAAAAACGCAACTCAAATCGTC
CTGAAAGGCCGCAGGTCTTCAACCTTCTTCGCGTCTTCGTTTTCACCACA
CAACAGTTTCTCGACAAAGCACGGCGCATCATCTACATCTACGCACCAAC
GCGACAGGTGGTCTAG
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Synonyms
Publications