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Properties
| Property Name | Value |
|---|
| TranscriptId | 592640 |
| Track | FilteredModels2 |
| ProteinId | 592554 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:453725..456382 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5451 ID=mRNA_5451|Name=jgi.p|Nanoce1779_2|592554|organism=Nannochloropsis oceanica|type=mRNA|length=2382bp
ACAGCTCGTATAAAACATGGAGGTCCCCCTCCCGCCTCTCTGCACCAGCT
CGTGGTACTGCCCGCCCGAGACCCTGGTGGCCACGCACCGTGACTATTCA
TCGCGCGACATCCACTATTCGTTTCTTCAGGTACATTTGACTTAGCAGGG
AGGAGAGAGAGGATATGCGTGTGTTGAAGCGGGAGGTGTGCTACGTGGGT
CTCATGGGTGGGTGTGCCTCAATTGAGTAGGACAGTACTCAATCAATCAT
TCTCAGAGCATATCATCATACGTGACTTCTTCCTCTTTAAATGGGTCCAA
GGCAGAAGAAGAATCAGTTCCCTTTGACCTGCCTCACTTATCTACTTCTG
GTCCTTTCTCTTTTCCTCCTTCCGATCTCTACCCTCACTCACGCTATCCA
CCCACACGACTCCCACTTCCCTCCCACAGCTCTGGCAGCTCTTCCCCTTC
CTCGAGAAGTTTTATGCGCCTTTTGAGAAAAATTTCAACCCTATCCCTAT
ATTTGAGTTCATCTCAACCAATTGGTGGATCCCCTACACATCCCTGGTCT
TGTATATCTCCATGATTGTTTTCCTGCCTCGGATCATGAAAAATCGCCCG
GTGAAAGATTTGAGCAAGCCCTTGGCTTTTTGGAATTTCTTCCTAGCAGT
GTATAGCACCATCGGGGCCATTCGTGTCGTCCCTCACTTGTTGTGGTTTA
TATCCACGCATACTTTTAAGGAGACTGTCTGTACCGCCCCCTATAGGATC
AATGGCGACGGCGCCACTGGTCTGTGGGTCACGCTCTTCACGCTCTCCAA
GGTCGTGGAGTTGGTGGACACCCTCTTTATTTGCTTGAAAGGGAAGAAGC
CCATATTCTTGCATTGGTATCATCATGTTTCCGTCCTCTACTTCACGTGG
GCGGCCCACGAGGCTGCCCATGCTGGCATGTATTTCATCGGCATGAACTA
CACCGTGCACTCGGTTATGTATTCCTACTACTTCCTCATGGCCATCAAGG
CTAAGCCCAAGTGGCTCAACCCGATCTACATCACCTTCATGCAAATTGCG
CAAATGATCGTGGGCGTCATCATCACCGCCTTTGGATTTTACTACTCCTC
CAAGGATGCTACTTGTGCGGTTGACCCGTTCGTGCTGAAGATCTCGGGAG
TAATTTATGCGTCTTACCTTTACTTGTTCATGGAGTTTATGATTAAGCGC
TTTTTCGTTGGTGGCGGAGGGGTGGCCGGTGGGAAGAAGAAGGGAGGTGC
CTCTCCCCGAAAGGCCAAGGCGAAGAAAGCGCTCTAAGCTTCAGGATTTT
TGGGATCGGGGTTCCCTATTAAGGGGAGATGGGCGTAGGCGTACGTGTGG
ATATATGGTGTGAGGAGCAGTTGCGTGCATAATCGAGGAAGGAAAGTGAT
TGAGACCAGAGAGAGGAACGACGAGTGGCTTTTTAAAAAATACGTCAGGC
CAATAGGTAGCAACGACAGAATGTTTACATATGTGCAAAGCCCATGCATT
TTGTATTGGATCTCTAAACATCGAGAAGATGAGGATGGAGGAGATTTTTC
CACTCTACTGCTTTTGAAGGGGGGGAGGGGAGTTGAGTGTCCCTTGTCTT
CCTGTAGATGCATGCAACAGGCATGCATGTACACAAATAAGGAGAGTAGA
TATAGAGAGAGGGTTGGGGAGAAAGAGGAGATGTGGAGAATGGAATGGGG
AGAGAGGGATGGCGGAGACATGAAGAGAAAGAGATGTCAACAATTTAGTC
AACAACAGATAATGAGGACAAAAATAACAACGACGACAACAACAAGAATG
ACCGAATATGGGAATATCCGCAATGCCAAGAATGTAATATGAATTCTCCT
CTATGGAGAGAATGTGAAGGGAGGGAGAAGGTGTGTAGTGTTCCTGAGCC
CGATAAGTGTCAACATCTGATTTTTTCCGGAATTTACTACCGCACATGTC
AATTTAAGGCGATTCGTTTGACAGGATTAAGAACAAGATAGGCGTGAAGG
CACGTAGGAGCCAGAGTGATGAATCATAATGTTATCAGTTCGCATACTAT
CGTTTGTTCCCAGCTCTCACTGCGGGTCTTTTAGTTGTGCCTTGGCAACT
CCGCACTCATGGGTCAACAGAAAGTGCTCTTTCTTATATTTCCTTACCTT
TTCCTTCGGATGGTTTCAGACAGAAGCATTTTTGGCGCCGCCTTTCGCGT
GCTTCTGGCCCTTTGTTGTCTTAAAACTTTTTTCACGGCTTGTGTAAGGC
CATCCTAGGCAAATGTCTTCCCTGGGGCACCACGCACATATCGATCGTTA
TCTCCGTTGACGTGCTACCGCATCATTCATTGTGCATCCCCCCCCCAACG
GCACTTAAGTCACCCATAATCCGCAAATAACC back to topprotein sequence of jgi.p|Nanoce1779_2|592554 >mRNA_5451-protein ID=mRNA_5451-protein|Name=jgi.p|Nanoce1779_2|592554|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MIVFLPRIMKNRPVKDLSKPLAFWNFFLAVYSTIGAIRVVPHLLWFISTH
TFKETVCTAPYRINGDGATGLWVTLFTLSKVVELVDTLFICLKGKKPIFL
HWYHHVSVLYFTWAAHEAAHAGMYFIGMNYTVHSVMYSYYFLMAIKAKPK
WLNPIYITFMQIAQMIVGVIITAFGFYYSSKDATCAVDPFVLKISGVIYA
SYLYLFMEFMIKRFFVGGGGVAGGKKKGGASPRKAKAKKAL* back to topmRNA from alignment at scaffold_13:453725..456382- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5451 ID=mRNA_5451|Name=jgi.p|Nanoce1779_2|592554|organism=Nannochloropsis oceanica|type=mRNA|length=2658bp|location=Sequence derived from alignment at scaffold_13:453725..456382- (Nannochloropsis oceanica)
ACAGCTCGTATAAAACATGGAGGTCCCCCTCCCGCCTCTCTGCACCAGCT
CGTGGTACTGCCCGCCCGAGACCCTGGTGGCCACGCACCGTGACTATTCA
TCGCGCGACATCCACTATTCGTTTCTTCAGGTACATTTGACTTAGCAGGG
AGGAGAGAGAGGATATGCGTGTGTTGAAGCGGGAGGTGTGCTACGTGGGT
CTCATGGGTGGGTGTGCCTCAATTGAGTAGGACAGTACTCAATCAATCAT
TCTCAGAGCATATCATCATACGTGACTTCTTCCTCTTTAAATGGGTCCAA
GGCAGAAGAAGAATCAGTTCCCTTTGACCTGCCTCACTTATCTACTTCTG
GTCCTTTCTCTTTTCCTCCTTCCGATCTCTACCCTCACTCACGCTATCCA
CCCACACGACTCCCACTTCCCTCCCACAGCTCTGGCAGCTCTTCCCCTTC
CTCGAGAAGTTTTATGCGCCTTTTGAGAAAAATTTCAACCCTATCCCTAT
ATTTGAGTTCATCTCAACCAATTGGTGGATCCCCTACACATCCCTGGTCT
TGTATATCTCCATGATTGTTTTCCTGCCTCGGATCATGAAAAATCGCCCG
GTGAAAGATTTGAGCAAGCCCTTGGCTTTTTGGAATTTCTTCCTAGCAGT
GTATAGCACCATCGGGGCCATTCGTGTCGTCCCTCACTTGTTGTGGTTTA
TATCCACGCATACTTTTAAGGAGACTGTCTGTACCGCCCCCTATAGGATC
AATGGCGACGGCGCCACTGGTCTGTGGGTCACGCTCTTCACGCTCTCCAA
GGTCGTGGAGTTGGTGGACACCCTCTTTATTTGCTTGAAAGGGAAGAAGC
CCATATTCTTGCATTGGTACGTGCTTTAGGTGGGAAGGGGATACGAGGGA
CAGGAGCAAGGAATGTGAGAGAAGGCGTAAAAAGACGCACGTGCTCACAA
TTTTCTTCTCAATGCATATGCATACCTTTCTATTGTCAATAGGTATCATC
ATGTTTCCGTCCTCTACTTCACGTGGGCGGCCCACGAGGCTGCCCATGCT
GGCATGTATTTCATCGGCATGAACTACACCGTGCACTCGGTTATGTATTC
CTACTACTTCCTCATGGCCATCAAGGCTAAGCCCAAGTGGCTCAAGTAAG
TACCTCCCGCCCGTTACTTTTTTAATTCCATCTCCCCTCTTTCCTCCCTT
TTTTCTTCGCTAATCGGCAACGCGGACTTGAATCTCGCATCTTGTGCATC
CAATCCAGACACCAATTCCTCCCTTCCTCCCTCCCTCAATTCTAGCCCGA
TCTACATCACCTTCATGCAAATTGCGCAAATGATCGTGGGCGTCATCATC
ACCGCCTTTGGATTTTACTACTCCTCCAAGGATGCTACTTGTGCGGTTGA
CCCGTTCGTGCTGAAGATCTCGGGAGTAATTTATGCGTCTTACCTTTACT
TGTTCATGGAGTTTATGATTAAGCGCTTTTTCGTTGGTGGCGGAGGGGTG
GCCGGTGGGAAGAAGAAGGGAGGTGCCTCTCCCCGAAAGGCCAAGGCGAA
GAAAGCGCTCTAAGCTTCAGGATTTTTGGGATCGGGGTTCCCTATTAAGG
GGAGATGGGCGTAGGCGTACGTGTGGATATATGGTGTGAGGAGCAGTTGC
GTGCATAATCGAGGAAGGAAAGTGATTGAGACCAGAGAGAGGAACGACGA
GTGGCTTTTTAAAAAATACGTCAGGCCAATAGGTAGCAACGACAGAATGT
TTACATATGTGCAAAGCCCATGCATTTTGTATTGGATCTCTAAACATCGA
GAAGATGAGGATGGAGGAGATTTTTCCACTCTACTGCTTTTGAAGGGGGG
GAGGGGAGTTGAGTGTCCCTTGTCTTCCTGTAGATGCATGCAACAGGCAT
GCATGTACACAAATAAGGAGAGTAGATATAGAGAGAGGGTTGGGGAGAAA
GAGGAGATGTGGAGAATGGAATGGGGAGAGAGGGATGGCGGAGACATGAA
GAGAAAGAGATGTCAACAATTTAGTCAACAACAGATAATGAGGACAAAAA
TAACAACGACGACAACAACAAGAATGACCGAATATGGGAATATCCGCAAT
GCCAAGAATGTAATATGAATTCTCCTCTATGGAGAGAATGTGAAGGGAGG
GAGAAGGTGTGTAGTGTTCCTGAGCCCGATAAGTGTCAACATCTGATTTT
TTCCGGAATTTACTACCGCACATGTCAATTTAAGGCGATTCGTTTGACAG
GATTAAGAACAAGATAGGCGTGAAGGCACGTAGGAGCCAGAGTGATGAAT
CATAATGTTATCAGTTCGCATACTATCGTTTGTTCCCAGCTCTCACTGCG
GGTCTTTTAGTTGTGCCTTGGCAACTCCGCACTCATGGGTCAACAGAAAG
TGCTCTTTCTTATATTTCCTTACCTTTTCCTTCGGATGGTTTCAGACAGA
AGCATTTTTGGCGCCGCCTTTCGCGTGCTTCTGGCCCTTTGTTGTCTTAA
AACTTTTTTCACGGCTTGTGTAAGGCCATCCTAGGCAAATGTCTTCCCTG
GGGCACCACGCACATATCGATCGTTATCTCCGTTGACGTGCTACCGCATC
ATTCATTGTGCATCCCCCCCCCAACGGCACTTAAGTCACCCATAATCCGC
AAATAACC back to topCoding sequence (CDS) from alignment at scaffold_13:453725..456382- >mRNA_5451 ID=mRNA_5451|Name=jgi.p|Nanoce1779_2|592554|organism=Nannochloropsis oceanica|type=CDS|length=2178bp|location=Sequence derived from alignment at scaffold_13:453725..456382- (Nannochloropsis oceanica)
CCCGATCTACATCACCTTCATGCAAATTGCGCAAATGATCGTGGGCGTCA
TCATCACCGCCTTTGGATTTTACTACTCCTCCAAGGATGCTACTTGTGCG
GTTGACCCGTTCGTGCTGAAGATCTCGGGAGTAATTTATGCGTCTTACCT
TTACTTGTTCATGGAGTTTATGATTAAGCGCTTTTTCGTTGGTGGCGGAG
GGGTGGCCGGTGGGAAGAAGAAGGGAGGTGCCTCTCCCCGAAAGGCCAAG
GCGAAGAAAGCGCTCTAAGTATCATCATGTTTCCGTCCTCTACTTCACGT
GGGCGGCCCACGAGGCTGCCCATGCTGGCATGTATTTCATCGGCATGAAC
TACACCGTGCACTCGGTTATGTATTCCTACTACTTCCTCATGGCCATCAA
GGCTAAGCCCAAGTGGCTCAAATGATTGTTTTCCTGCCTCGGATCATGAA
AAATCGCCCGGTGAAAGATTTGAGCAAGCCCTTGGCTTTTTGGAATTTCT
TCCTAGCAGTGTATAGCACCATCGGGGCCATTCGTGTCGTCCCTCACTTG
TTGTGGTTTATATCCACGCATACTTTTAAGGAGACTGTCTGTACCGCCCC
CTATAGGATCAATGGCGACGGCGCCACTGGTCTGTGGGTCACGCTCTTCA
CGCTCTCCAAGGTCGTGGAGTTGGTGGACACCCTCTTTATTTGCTTGAAA
GGGAAGAAGCCCATATTCTTGCATTGCCCGATCTACATCACCTTCATGCA
AATTGCGCAAATGATCGTGGGCGTCATCATCACCGCCTTTGGATTTTACT
ACTCCTCCAAGGATGCTACTTGTGCGGTTGACCCGTTCGTGCTGAAGATC
TCGGGAGTAATTTATGCGTCTTACCTTTACTTGTTCATGGAGTTTATGAT
TAAGCGCTTTTTCGTTGGTGGCGGAGGGGTGGCCGGTGGGAAGAAGAAGG
GAGGTGCCTCTCCCCGAAAGGCCAAGGCGAAGAAAGCGCTCTAAGTATCA
TCATGTTTCCGTCCTCTACTTCACGTGGGCGGCCCACGAGGCTGCCCATG
CTGGCATGTATTTCATCGGCATGAACTACACCGTGCACTCGGTTATGTAT
TCCTACTACTTCCTCATGGCCATCAAGGCTAAGCCCAAGTGGCTCAAATG
ATTGTTTTCCTGCCTCGGATCATGAAAAATCGCCCGGTGAAAGATTTGAG
CAAGCCCTTGGCTTTTTGGAATTTCTTCCTAGCAGTGTATAGCACCATCG
GGGCCATTCGTGTCGTCCCTCACTTGTTGTGGTTTATATCCACGCATACT
TTTAAGGAGACTGTCTGTACCGCCCCCTATAGGATCAATGGCGACGGCGC
CACTGGTCTGTGGGTCACGCTCTTCACGCTCTCCAAGGTCGTGGAGTTGG
TGGACACCCTCTTTATTTGCTTGAAAGGGAAGAAGCCCATATTCTTGCAT
TGCCCGATCTACATCACCTTCATGCAAATTGCGCAAATGATCGTGGGCGT
CATCATCACCGCCTTTGGATTTTACTACTCCTCCAAGGATGCTACTTGTG
CGGTTGACCCGTTCGTGCTGAAGATCTCGGGAGTAATTTATGCGTCTTAC
CTTTACTTGTTCATGGAGTTTATGATTAAGCGCTTTTTCGTTGGTGGCGG
AGGGGTGGCCGGTGGGAAGAAGAAGGGAGGTGCCTCTCCCCGAAAGGCCA
AGGCGAAGAAAGCGCTCTAAGTATCATCATGTTTCCGTCCTCTACTTCAC
GTGGGCGGCCCACGAGGCTGCCCATGCTGGCATGTATTTCATCGGCATGA
ACTACACCGTGCACTCGGTTATGTATTCCTACTACTTCCTCATGGCCATC
AAGGCTAAGCCCAAGTGGCTCAAATGATTGTTTTCCTGCCTCGGATCATG
AAAAATCGCCCGGTGAAAGATTTGAGCAAGCCCTTGGCTTTTTGGAATTT
CTTCCTAGCAGTGTATAGCACCATCGGGGCCATTCGTGTCGTCCCTCACT
TGTTGTGGTTTATATCCACGCATACTTTTAAGGAGACTGTCTGTACCGCC
CCCTATAGGATCAATGGCGACGGCGCCACTGGTCTGTGGGTCACGCTCTT
CACGCTCTCCAAGGTCGTGGAGTTGGTGGACACCCTCTTTATTTGCTTGA
AAGGGAAGAAGCCCATATTCTTGCATTG back to top
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