jgi.p|Nanoce1779_2|592550, mRNA_5450 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592550
Unique NamemRNA_5450
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1699
Alignment locationscaffold_13:451409..453724 -

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Properties
Property NameValue
TranscriptId592636
TrackFilteredModels2
ProteinId592550
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:451409..453724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592550gene_5450Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592550mRNA_5450-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5450CDS_5450Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5450 ID=mRNA_5450|Name=jgi.p|Nanoce1779_2|592550|organism=Nannochloropsis oceanica|type=mRNA|length=1699bp
TCCCAACCCAAACCCTCCCCGGCTGCAACGACAAAAAAGGACGGCACAAG
GTGTGCCGCACCCAAAGCATGTATCTATCCATGGGGATAATACTAAACAT
GGTTTGATGACCGCTTGTCATCACTATTGTGTCGTACCCGTACACCTCAG
AACGCGTATAATGTTGGACGATGGTGAGAATGATACATGTCCTCACGGCA
AATTTTTCCAGAAGCGAGACAATCACGCAAATCCATGATTCCAAGGTGTA
GAACACATTGCCTTAAAATCGTATCACGAAAGATATTGGCGAGACCAATT
TATGTAGATCCCAGGAGAACGTACTTATCCGCTCTCTCCAGCTTTTTGCC
GGGGGAGTGGGGTGGAGAAGGGTTGAAGTGGGAACGTGTATCCTTGTGGT
CTCATGATACATGCTTGATTTATATCCCATGCTTTGTCAGGACTGTCCAC
TGCCCTTATCAAGATGACTTTCACTCCATCAACGCACCTCTTTACGGCGG
CATCGTCGCTTACCTACTTCTATATTTCACAAATCCTCTCCTCCTACACT
CTCAGAACATAAACAGACAGCAGCGATCCTTGCTTCAGGTAGCGCGACCA
GAAGCATGCCCTAGGACACGTCCTCTGGCATCTTTAATTTCGGCTTAAAT
CGTTTCTGCTCCTTGTTCCGTGCACACACATCGAACTGGACAAGCGTACC
GTATAGTCTTGTGGGAAGATGGACGTGGAAGCAGCTTTCTTTCCCTTGAG
ATATGCTTAACTGCTTGCCTCGGAACATGGCCTGTGCCTTTACTCGTGAG
ATATACAACAGGCAGCACATAGATAGACAGAGGCTGGGGTCACTCGAAAG
AGGCGTCTGCACCACACCCCCCCACCCTTGCCACACCCGTGTCGCGGTCG
TCCTGATCATCACCACCACAACCACTACCCACCCCCTCCGTGAAGCATGC
TGGACGATGGCATTAACGCCACCACCTGCACCTCCTCCTTCTACTGCCCC
CCCTCCACCCTTATTCCGGTGACCCGCGAGCTGGCTGGCAACACCTACAC
ATTTTTGCAGTTCTGGCAGCTATTCCCCTGGACCAAGCCATTCTACACCC
CTTTCGAGAAGAATTTCGACGTCCGGCCATGGTTTATGTTCGTACATGGG
AACTGGTGGGTGCCCGTGGTAGCCATCGCGCTGTATGGCGTGATGATAGT
CACCTTGCCGAAATACACCGCCAAAAAGCCAGTCAAGTGTGACGTGGCTC
TGGCGTACTGGAATTTCTTCCTGGCCGTTTTTTCCACCCTGGGCGCCATC
CGGATCGTCCCCCACCTGTTGTGGTTCTCGGCCACCCACACATTCAAGGA
CACGGTGTGCACTCCGCCGCAGATGATGAATGGGGACGGAGCCTCGGGCT
TGTGGTGCTTGTTGTTTACGCTCTCCAAAGTAATTGAGTTGCTGGACACG
CTCTTTGTCTGTCTGAAGGGACGGACGCCCATCTTCTTGCATTGGTACCA
CCACGTGACGGTCCTGAGCTTTACATGGACCGCCTACGCTGCCCGGCACC
CGGGGGTGTATTTTATCGCCATGAACTACACCGTGCACGCCGTCATGTAC
TCCTACTTCTTCCTCATGGCCATCGATGCGAAACCCAAATGGCTCAAGTA
TGTACCTTCTGGGGAAGGGAGAGAGAGAGAAAGGGGGGGGGAAAGGGAG
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protein sequence of jgi.p|Nanoce1779_2|592550

>mRNA_5450-protein ID=mRNA_5450-protein|Name=jgi.p|Nanoce1779_2|592550|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MSSRQIFPEARQSRKSMIPRCRTHCLKIVSRKILARPIYVDPRRTYLSAL
SSFLPGEWGGEGLKWERVSLWSHDTCLIYIPCFVRTVHCPYQDDFHSINA
PLYGGIVAYLLLYFTNPLLLHSQNINRQQRSLLQVARPEACPRTRPLASL
ISA*
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mRNA from alignment at scaffold_13:451409..453724-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5450 ID=mRNA_5450|Name=jgi.p|Nanoce1779_2|592550|organism=Nannochloropsis oceanica|type=mRNA|length=2316bp|location=Sequence derived from alignment at scaffold_13:451409..453724- (Nannochloropsis oceanica)
TCCCAACCCAAACCCTCCCCGGCTGCAACGACAAAAAAGGACGGCACAAG
GTGTGCCGCACCCAAAGCATGTATCTATCCATGGGGATAATACTAAACAT
GGTTTGATGACCGCTTGTCATCACTATTGTGTCGTACCCGTACACCTCAG
AACGCGTATAATGTTGGACGATGGTGAGAATGATACATGTCCTCACGGCA
AATTTTTCCAGAAGCGAGACAATCACGCAAATCCATGATTCCAAGGTGTA
GAACACATTGCCTTAAAATCGTATCACGAAAGATATTGGCGAGACCAATT
TATGTAGATCCCAGGAGAACGTACTTATCCGCTCTCTCCAGCTTTTTGCC
GGGGGAGTGGGGTGGAGAAGGGTTGAAGTGGGAACGTGTATCCTTGTGGT
CTCATGATACATGCTTGATTTATATCCCATGCTTTGTCAGGACTGTCCAC
TGCCCTTATCAAGATGACTTTCACTCCATCAACGCACCTCTTTACGGCGG
CATCGTCGCTTACCTACTTCTATATTTCACAAATCCTCTCCTCCTACACT
CTCAGAACATAAACAGACAGCAGCGATCCTTGCTTCAGGTAGCGCGACCA
GAAGCATGCCCTAGGACACGTCCTCTGGCATCTTTAATTTCGGCTTAAAT
CGTTTCTGCTCCTTGTTCCGTGCACACACATCGAACTGGACAAGCGTACC
GTATAGTCTTGTGGGAAGATGGACGTGGAAGCAGCTTTCTTTCCCTTGAG
ATATGCTTAACTGCTTGCCTCGGAACATGGCCTGTGCCTTTACTCGTGAG
GTACTATGGTATCTGGCTTCTGAGGAAGGAGACAAAAGACGCGCATAGTG
ATGGCTAATCTTAGCTGCGCTCGCACATTTGTTCGCCGTCGTGAAAAGAG
TGCCACCCTCATCTTGCTTCCCAACCATCCCCTAACCGATTCCTCGACCC
CCCTCCGCTCCCGATATGCATCCCTTAGATATACAACAGGCAGCACATAG
ATAGACAGAGGCTGGGGTCACTCGAAAGAGGCGTCTGCACCACACCCCCC
CACCCTTGCCACACCCGTGTCGCGGTCGTCCTGATCATCACCACCACAAC
CACTACCCACCCCCTCCGTGAAGCATGCTGGACGATGGCATTAACGCCAC
CACCTGCACCTCCTCCTTCTACTGCCCCCCCTCCACCCTTATTCCGGTGA
CCCGCGAGCTGGCTGGCAACACCTACACATTTTTGCAGGTGCGCAAGAAG
AGAGCAAAGGAAAGAGGATGGTCATGACACAGACCGGAAGATCAGATATC
CAGGGTTTTGGGGATTAAAGGGAAGGATGGAGGGATAAACAATTACATTC
AGGAAATTTGAATTTCTTTTCGCTCCATCCCTCTCTTGTTAGTTCTGGCA
GCTATTCCCCTGGACCAAGCCATTCTACACCCCTTTCGAGAAGAATTTCG
ACGTCCGGCCATGGTTTATGTTCGTACATGGGAACTGGTGGGTGCCCGTG
GTAGCCATCGCGCTGTATGGCGTGATGATAGTCACCTTGCCGAAATACAC
CGCCAAAAAGCCAGTCAAGGTAGGTAGGTTGGGAGAGAGGGAGGAAGAGG
AGGTGGGAGGGAGAGAAGGAAGGGTGGATAGGATTCAAACAAAACATTTG
GAGGACGAACGAAGGGCTCATCGAAGACTCTCGCCCGCTCTCCATCATCC
ACGCACACGCCCCCCTCCCCGCAGTGTGACGTGGCTCTGGCGTACTGGAA
TTTCTTCCTGGCCGTTTTTTCCACCCTGGGCGCCATCCGGATCGTCCCCC
ACCTGTTGTGGTTCTCGGCCACCCACACATTCAAGGACACGGTGTGCACT
CCGCCGCAGATGATGAATGGGGACGGAGCCTCGGGCTTGTGGTGCTTGTT
GTTTACGCTCTCCAAAGTAATTGAGTTGCTGGACACGCTCTTTGTCTGTC
TGAAGGGACGGACGCCCATCTTCTTGCATTGGTAAGCGTGGAAGGCATGG
AAGGAAGGACGAAGGGAGGGATGGAGGGATGGAGGAAGGGGACAGGGGGA
GCTTACCTTTTCAAAGGAAAATTTATCCACTATCTCCCTCCTTCCTCCCT
CCCTCCCTCAGGTACCACCACGTGACGGTCCTGAGCTTTACATGGACCGC
CTACGCTGCCCGGCACCCGGGGGTGTATTTTATCGCCATGAACTACACCG
TGCACGCCGTCATGTACTCCTACTTCTTCCTCATGGCCATCGATGCGAAA
CCCAAATGGCTCAAGTATGTACCTTCTGGGGAAGGGAGAGAGAGAGAAAG
GGGGGGGGAAAGGGAG
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Coding sequence (CDS) from alignment at scaffold_13:451409..453724-

>mRNA_5450 ID=mRNA_5450|Name=jgi.p|Nanoce1779_2|592550|organism=Nannochloropsis oceanica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_13:451409..453724- (Nannochloropsis oceanica)
ATGTCCTCACGGCAAATTTTTCCAGAAGCGAGACAATCACGCAAATCCAT
GATTCCAAGGTGTAGAACACATTGCCTTAAAATCGTATCACGAAAGATAT
TGGCGAGACCAATTTATGTAGATCCCAGGAGAACGTACTTATCCGCTCTC
TCCAGCTTTTTGCCGGGGGAGTGGGGTGGAGAAGGGTTGAAGTGGGAACG
TGTATCCTTGTGGTCTCATGATACATGCTTGATTTATATCCCATGCTTTG
TCAGGACTGTCCACTGCCCTTATCAAGATGACTTTCACTCCATCAACGCA
CCTCTTTACGGCGGCATCGTCGCTTACCTACTTCTATATTTCACAAATCC
TCTCCTCCTACACTCTCAGAACATAAACAGACAGCAGCGATCCTTGCTTC
AGGTAGCGCGACCAGAAGCATGCCCTAGGACACGTCCTCTGGCATCTTTA
ATTTCGGCTTAA
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Synonyms
Publications