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Properties
| Property Name | Value |
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| TranscriptId | 592628 |
| Track | FilteredModels2 |
| ProteinId | 592542 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:449866..452748 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5449 ID=mRNA_5449|Name=jgi.p|Nanoce1779_2|592542|organism=Nannochloropsis oceanica|type=mRNA|length=2184bp
AGATATACAACAGGCAGCACATAGATAGACAGAGGCTGGGGTCACTCGAA
AGAGGCGTCTGCACCACACCCCCCCACCCTTGCCACACCCGTGTCGCGGT
CGTCCTGATCATCACCACCACAACCACTACCCACCCCCTCCGTGAAGCAT
GCTGGACGATGGCATTAACGCCACCACCTGCACCTCCTCCTTCTACTGCC
CCCCCTCCACCCTTATTCCGGTGACCCGCGAGCTGGCTGGCAACACCTAC
ACATTTTTGCAGTTCTGGCAGCTATTCCCCTGGACCAAGCCATTCTACAC
CCCTTTCGAGAAGAATTTCGACGTCCGGCCATGGTTTATGTTCGTACATG
GGAACTGGTGGGTGCCCGTGGTAGCCATCGCGCTGTATGGCGTGATGATA
GTCACCTTGCCGAAATACACCGCCAAAAAGCCAGTCAAGTGTGACGTGGC
TCTGGCGTACTGGAATTTCTTCCTGGCCGTTTTTTCCACCCTGGGCGCCA
TCCGGATCGTCCCCCACCTGTTGTGGTTCTCGGCCACCCACACATTCAAG
GACACGGTGTGCACTCCGCCGCAGATGATGAATGGGGACGGAGCCTCGGG
CTTGTGGTGCTTGTTGTTTACGCTCTCCAAAGTAATTGAGTTGCTGGACA
CGCTCTTTGTCTGTCTGAAGGGACGGACGCCCATCTTCTTGCATTGGTAC
CACCACGTGACGGTCCTGAGCTTTACATGGACCGCCTACGCTGCCCGGCA
CCCGGGGGTGTATTTTATCGCCATGAACTACACCGTGCACGCCGTCATGT
ACTCCTACTTCTTCCTCATGGCCATCGATGCGAAACCCAAATGGCTCAAT
CCCATGTACATAACCTTCCTACAGATCTCCCAAATGGTGGCCGGGGTCGT
CATCACCCTCTGCGGCTTCCACTACATCGCCCGCGACCCGTCCACCTGCG
GCGTCGTCCCTCATGTCCTCTACTTCCAAGGCCTTATTTATGGTTCCTAC
CTTTATCTCTTCCTCGAGTTCCTCATCAAGCGCTTTTTTTCCTCCTCTAA
AAAGGGCTCGTCCTCCCTTGTGTCCTCCCTCCCTCCCTCCCGCTCGGCCG
TGGCCTCGAACGGCGCGATGGCCAAGGGGATCGGGAATGGGGGGCAGGAG
TTGGCCGCTGGAGAAAGAGATACAGCAGTAGCAGCACCGGCAGCAGCAGG
AGGAAAAGGGGAGGGATACAAACGTGACTCACACTCGAAGAAGCCGCAGT
AGCCGACAGATTAGATCAAGGGAGGGAAGGAGAGGAGGTGGGAGAAGGAC
AGTGGCCTGGCCAGCAGCGAATGGGGCTACCAGCATGGCAGCGTGGCAAG
ACACAAGAGATTGAGTAAGAGATAGGTAGAGATAGATGGGGAGATAGAGA
GAGAGATTTAAACAGAGAGAGGGAGCGATAGGATAGAGAGAGCGACGGAC
AGACTGAGAGAGCAGAGAGAGAACAGATTGAGAACAGAATGGGAGAGACA
GAATGAGAGAGACAGAATGAGAGAGACAGAGACTAAAGCAAGAGAGTGGA
GTGCAAACAATGAAGACCGAATGACACTGCGAAGTGAAAATACATAGGAT
GTTTGAGGTCAGTAAAAGGACACTGTTGTATTCGATTAAACCAAACGGGG
AGAAAGCCGGCACAAACTCACAAATGGAAGCAAGAAGTAACATAAATCGA
ATGAGAAGGACTGCAGTCGTGTACAAGTCTCGACGACAGAGAGAGCAAAA
GAGAGGAAAAGCTGCGTATGGTCACCTATGTGTAACTTATGCTTCTTTTG
ATATTTTATCGATGGGAACCTGTCACTCTTTCTTCAGCGTCGACTTGGAA
GGTCGTTTCCCCAGGCCCGCCTTCTCGTCTCCCTTCCTCAACATCTTTCT
CGCCTCTTCCTCCAAGGATAGGAATCGTTCTGTCGCCGACAACATGGCCG
GGTATCGGTCCCCCAGCAGGCGTTTCTCGACCTCTTCTAGTTCGAATCGA
TGCCGGACCACCTCCAGTCCCTCTTTGGCCGCCATGAACATTTTCGCGCA
ATCAAACCCCATCGGTGCCGGGGGCCCTCCTCCTACAGGCACGCCTCCCA
TCTGTTGTCCGTACACCCGTGCTTCCTCTTGCAAGGATTCCTCGTCAAAG
GTAAAGAGACGTTGCAAATCCTTCACGCCGAACG back to topprotein sequence of jgi.p|Nanoce1779_2|592542 >mRNA_5449-protein ID=mRNA_5449-protein|Name=jgi.p|Nanoce1779_2|592542|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MLDDGINATTCTSSFYCPPSTLIPVTRELAGNTYTFLQFWQLFPWTKPFY
TPFEKNFDVRPWFMFVHGNWWVPVVAIALYGVMIVTLPKYTAKKPVKCDV
ALAYWNFFLAVFSTLGAIRIVPHLLWFSATHTFKDTVCTPPQMMNGDGAS
GLWCLLFTLSKVIELLDTLFVCLKGRTPIFLHWYHHVTVLSFTWTAYAAR
HPGVYFIAMNYTVHAVMYSYFFLMAIDAKPKWLNPMYITFLQISQMVAGV
VITLCGFHYIARDPSTCGVVPHVLYFQGLIYGSYLYLFLEFLIKRFFSSS back to topmRNA from alignment at scaffold_13:449866..452748- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5449 ID=mRNA_5449|Name=jgi.p|Nanoce1779_2|592542|organism=Nannochloropsis oceanica|type=mRNA|length=2883bp|location=Sequence derived from alignment at scaffold_13:449866..452748- (Nannochloropsis oceanica)
AGATATACAACAGGCAGCACATAGATAGACAGAGGCTGGGGTCACTCGAA
AGAGGCGTCTGCACCACACCCCCCCACCCTTGCCACACCCGTGTCGCGGT
CGTCCTGATCATCACCACCACAACCACTACCCACCCCCTCCGTGAAGCAT
GCTGGACGATGGCATTAACGCCACCACCTGCACCTCCTCCTTCTACTGCC
CCCCCTCCACCCTTATTCCGGTGACCCGCGAGCTGGCTGGCAACACCTAC
ACATTTTTGCAGGTGCGCAAGAAGAGAGCAAAGGAAAGAGGATGGTCATG
ACACAGACCGGAAGATCAGATATCCAGGGTTTTGGGGATTAAAGGGAAGG
ATGGAGGGATAAACAATTACATTCAGGAAATTTGAATTTCTTTTCGCTCC
ATCCCTCTCTTGTTAGTTCTGGCAGCTATTCCCCTGGACCAAGCCATTCT
ACACCCCTTTCGAGAAGAATTTCGACGTCCGGCCATGGTTTATGTTCGTA
CATGGGAACTGGTGGGTGCCCGTGGTAGCCATCGCGCTGTATGGCGTGAT
GATAGTCACCTTGCCGAAATACACCGCCAAAAAGCCAGTCAAGGTAGGTA
GGTTGGGAGAGAGGGAGGAAGAGGAGGTGGGAGGGAGAGAAGGAAGGGTG
GATAGGATTCAAACAAAACATTTGGAGGACGAACGAAGGGCTCATCGAAG
ACTCTCGCCCGCTCTCCATCATCCACGCACACGCCCCCCTCCCCGCAGTG
TGACGTGGCTCTGGCGTACTGGAATTTCTTCCTGGCCGTTTTTTCCACCC
TGGGCGCCATCCGGATCGTCCCCCACCTGTTGTGGTTCTCGGCCACCCAC
ACATTCAAGGACACGGTGTGCACTCCGCCGCAGATGATGAATGGGGACGG
AGCCTCGGGCTTGTGGTGCTTGTTGTTTACGCTCTCCAAAGTAATTGAGT
TGCTGGACACGCTCTTTGTCTGTCTGAAGGGACGGACGCCCATCTTCTTG
CATTGGTAAGCGTGGAAGGCATGGAAGGAAGGACGAAGGGAGGGATGGAG
GGATGGAGGAAGGGGACAGGGGGAGCTTACCTTTTCAAAGGAAAATTTAT
CCACTATCTCCCTCCTTCCTCCCTCCCTCCCTCAGGTACCACCACGTGAC
GGTCCTGAGCTTTACATGGACCGCCTACGCTGCCCGGCACCCGGGGGTGT
ATTTTATCGCCATGAACTACACCGTGCACGCCGTCATGTACTCCTACTTC
TTCCTCATGGCCATCGATGCGAAACCCAAATGGCTCAAGTATGTACCTTC
TGGGGAAGGGAGAGAGAGAGAAAGGGGGGGGGAAAGGGAGGGAGGGAGGG
AGGGAGGGGCGGAAGGAAAGGAAGGAAATTTGATGCCTTACATCTGCTTC
TCATTTGCTTTCTTCCCTCCCTCCCTCCCTACCTCAGTCCCATGTACATA
ACCTTCCTACAGATCTCCCAAATGGTGGCCGGGGTCGTCATCACCCTCTG
CGGCTTCCACTACATCGCCCGCGACCCGTCCACCTGCGGCGTCGTCCCTC
ATGTCCTCTACTTCCAAGGCCTTATTTATGGTTCCTACCTTTATCTCTTC
CTCGAGTTCCTCATCAAGCGCTTTTTTTCCTCCTCTAAAAAGGGCTCGTC
CTCCCTTGTGTCCTCCCTCCCTCCCTCCCGCTCGGCCGTGGCCTCGAACG
GCGCGATGGCCAAGGGGATCGGGAATGGGGGGCAGGAGTTGGCCGCTGGA
GAAAGAGATACAGCAGTAGCAGCACCGGCAGCAGCAGGAGGAAAAGGGGA
GGGATACAAACGTGACTCACACTCGAAGAAGCCGCAGTAGCCGACAGATT
AGATCAAGGGAGGGAAGGAGAGGAGGTGGGAGAAGGACAGTGGCCTGGCC
AGCAGCGAATGGGGCTACCAGCATGGCAGCGTGGCAAGACACAAGAGATT
GAGTAAGAGATAGGTAGAGATAGATGGGGAGATAGAGAGAGAGATTTAAA
CAGAGAGAGGGAGCGATAGGATAGAGAGAGCGACGGACAGACTGAGAGAG
CAGAGAGAGAACAGATTGAGAACAGAATGGGAGAGACAGAATGAGAGAGA
CAGAATGAGAGAGACAGAGACTAAAGCAAGAGAGTGGAGTGCAAACAATG
AAGACCGAATGACACTGCGAAGTGAAAATACATAGGATGTTTGAGGTCAG
TAAAAGGACACTGTTGTATTCGATTAAACCAAACGGGGAGAAAGCCGGCA
CAAACTCACAAATGGAAGCAAGAAGTAACATAAATCGAATGAGAAGGACT
GCAGTCGTGTACAAGTCTCGACGACAGAGAGAGCAAAAGAGAGGAAAAGC
TGCGTATGGTCACCTATGTGTAACTTATGCTTCTTTTGATATTTTATCGA
TGGGAACCTGTCACTCTTTCTTCAGCGTCGACTTGGAAGGTCGTTTCCCC
AGGCCCGCCTTCTCGTCTCCCTTCCTCAACATCTTTCTCGCCTCTTCCTC
CAAGGATAGGAATCGTTCTGTGTGTTTCATACATGAGGAATGAATATGAG
AAAATGCACGACGACAAGCCAGAGCTTCGAAGTCAGCTTTCCCCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCACATACCTGTCGCCGACAACATGGCCGG
GTATCGGTCCCCCAGCAGGCGTTTCTCGACCTCTTCTAGTTCGAATCGAT
GCCGGACCACCTCCAGTCCCTCTTTGGCCGCCATGAACATTTTCGCGCAA
TCAAACCCCATCGGTGCCGGGGGCCCTCCTCCTACAGGCACGCCTCCCAT
CTGTTGTCCGTACACCCGTGCTTCCTCTTGCAAGGATTCCTCGTCAAAGG
TAAAGAGACGTTGCAAATCCTTCACGCCGAACG back to topCoding sequence (CDS) from alignment at scaffold_13:449866..452748- >mRNA_5449 ID=mRNA_5449|Name=jgi.p|Nanoce1779_2|592542|organism=Nannochloropsis oceanica|type=CDS|length=4510bp|location=Sequence derived from alignment at scaffold_13:449866..452748- (Nannochloropsis oceanica)
TCCCATGTACATAACCTTCCTACAGATCTCCCAAATGGTGGCCGGGGTCG
TCATCACCCTCTGCGGCTTCCACTACATCGCCCGCGACCCGTCCACCTGC
GGCGTCGTCCCTCATGTCCTCTACTTCCAAGGCCTTATTTATGGTTCCTA
CCTTTATCTCTTCCTCGAGTTCCTCATCAAGCGCTTTTTTTCCTCCTCTA
AGTACCACCACGTGACGGTCCTGAGCTTTACATGGACCGCCTACGCTGCC
CGGCACCCGGGGGTGTATTTTATCGCCATGAACTACACCGTGCACGCCGT
CATGTACTCCTACTTCTTCCTCATGGCCATCGATGCGAAACCCAAATGGC
TCAATGTGACGTGGCTCTGGCGTACTGGAATTTCTTCCTGGCCGTTTTTT
CCACCCTGGGCGCCATCCGGATCGTCCCCCACCTGTTGTGGTTCTCGGCC
ACCCACACATTCAAGGACACGGTGTGCACTCCGCCGCAGATGATGAATGG
GGACGGAGCCTCGGGCTTGTGGTGCTTGTTGTTTACGCTCTCCAAAGTAA
TTGAGTTGCTGGACACGCTCTTTGTCTGTCTGAAGGGACGGACGCCCATC
TTCTTGCATTGTTCTGGCAGCTATTCCCCTGGACCAAGCCATTCTACACC
CCTTTCGAGAAGAATTTCGACGTCCGGCCATGGTTTATGTTCGTACATGG
GAACTGGTGGGTGCCCGTGGTAGCCATCGCGCTGTATGGCGTGATGATAG
TCACCTTGCCGAAATACACCGCCAAAAAGCCAGTCAAGATGCTGGACGAT
GGCATTAACGCCACCACCTGCACCTCCTCCTTCTACTGCCCCCCCTCCAC
CCTTATTCCGGTGACCCGCGAGCTGGCTGGCAACACCTACACATTTTTGC
AGTCCCATGTACATAACCTTCCTACAGATCTCCCAAATGGTGGCCGGGGT
CGTCATCACCCTCTGCGGCTTCCACTACATCGCCCGCGACCCGTCCACCT
GCGGCGTCGTCCCTCATGTCCTCTACTTCCAAGGCCTTATTTATGGTTCC
TACCTTTATCTCTTCCTCGAGTTCCTCATCAAGCGCTTTTTTTCCTCCTC
TAAGTACCACCACGTGACGGTCCTGAGCTTTACATGGACCGCCTACGCTG
CCCGGCACCCGGGGGTGTATTTTATCGCCATGAACTACACCGTGCACGCC
GTCATGTACTCCTACTTCTTCCTCATGGCCATCGATGCGAAACCCAAATG
GCTCAATGTGACGTGGCTCTGGCGTACTGGAATTTCTTCCTGGCCGTTTT
TTCCACCCTGGGCGCCATCCGGATCGTCCCCCACCTGTTGTGGTTCTCGG
CCACCCACACATTCAAGGACACGGTGTGCACTCCGCCGCAGATGATGAAT
GGGGACGGAGCCTCGGGCTTGTGGTGCTTGTTGTTTACGCTCTCCAAAGT
AATTGAGTTGCTGGACACGCTCTTTGTCTGTCTGAAGGGACGGACGCCCA
TCTTCTTGCATTGTTCTGGCAGCTATTCCCCTGGACCAAGCCATTCTACA
CCCCTTTCGAGAAGAATTTCGACGTCCGGCCATGGTTTATGTTCGTACAT
GGGAACTGGTGGGTGCCCGTGGTAGCCATCGCGCTGTATGGCGTGATGAT
AGTCACCTTGCCGAAATACACCGCCAAAAAGCCAGTCAAGATGCTGGACG
ATGGCATTAACGCCACCACCTGCACCTCCTCCTTCTACTGCCCCCCCTCC
ACCCTTATTCCGGTGACCCGCGAGCTGGCTGGCAACACCTACACATTTTT
GCAGTCCCATGTACATAACCTTCCTACAGATCTCCCAAATGGTGGCCGGG
GTCGTCATCACCCTCTGCGGCTTCCACTACATCGCCCGCGACCCGTCCAC
CTGCGGCGTCGTCCCTCATGTCCTCTACTTCCAAGGCCTTATTTATGGTT
CCTACCTTTATCTCTTCCTCGAGTTCCTCATCAAGCGCTTTTTTTCCTCC
TCTAAGTACCACCACGTGACGGTCCTGAGCTTTACATGGACCGCCTACGC
TGCCCGGCACCCGGGGGTGTATTTTATCGCCATGAACTACACCGTGCACG
CCGTCATGTACTCCTACTTCTTCCTCATGGCCATCGATGCGAAACCCAAA
TGGCTCAATGTGACGTGGCTCTGGCGTACTGGAATTTCTTCCTGGCCGTT
TTTTCCACCCTGGGCGCCATCCGGATCGTCCCCCACCTGTTGTGGTTCTC
GGCCACCCACACATTCAAGGACACGGTGTGCACTCCGCCGCAGATGATGA
ATGGGGACGGAGCCTCGGGCTTGTGGTGCTTGTTGTTTACGCTCTCCAAA
GTAATTGAGTTGCTGGACACGCTCTTTGTCTGTCTGAAGGGACGGACGCC
CATCTTCTTGCATTGTTCTGGCAGCTATTCCCCTGGACCAAGCCATTCTA
CACCCCTTTCGAGAAGAATTTCGACGTCCGGCCATGGTTTATGTTCGTAC
ATGGGAACTGGTGGGTGCCCGTGGTAGCCATCGCGCTGTATGGCGTGATG
ATAGTCACCTTGCCGAAATACACCGCCAAAAAGCCAGTCAAGATGCTGGA
CGATGGCATTAACGCCACCACCTGCACCTCCTCCTTCTACTGCCCCCCCT
CCACCCTTATTCCGGTGACCCGCGAGCTGGCTGGCAACACCTACACATTT
TTGCAGTCCCATGTACATAACCTTCCTACAGATCTCCCAAATGGTGGCCG
GGGTCGTCATCACCCTCTGCGGCTTCCACTACATCGCCCGCGACCCGTCC
ACCTGCGGCGTCGTCCCTCATGTCCTCTACTTCCAAGGCCTTATTTATGG
TTCCTACCTTTATCTCTTCCTCGAGTTCCTCATCAAGCGCTTTTTTTCCT
CCTCTAAGTACCACCACGTGACGGTCCTGAGCTTTACATGGACCGCCTAC
GCTGCCCGGCACCCGGGGGTGTATTTTATCGCCATGAACTACACCGTGCA
CGCCGTCATGTACTCCTACTTCTTCCTCATGGCCATCGATGCGAAACCCA
AATGGCTCAATGTGACGTGGCTCTGGCGTACTGGAATTTCTTCCTGGCCG
TTTTTTCCACCCTGGGCGCCATCCGGATCGTCCCCCACCTGTTGTGGTTC
TCGGCCACCCACACATTCAAGGACACGGTGTGCACTCCGCCGCAGATGAT
GAATGGGGACGGAGCCTCGGGCTTGTGGTGCTTGTTGTTTACGCTCTCCA
AAGTAATTGAGTTGCTGGACACGCTCTTTGTCTGTCTGAAGGGACGGACG
CCCATCTTCTTGCATTGTTCTGGCAGCTATTCCCCTGGACCAAGCCATTC
TACACCCCTTTCGAGAAGAATTTCGACGTCCGGCCATGGTTTATGTTCGT
ACATGGGAACTGGTGGGTGCCCGTGGTAGCCATCGCGCTGTATGGCGTGA
TGATAGTCACCTTGCCGAAATACACCGCCAAAAAGCCAGTCAAGATGCTG
GACGATGGCATTAACGCCACCACCTGCACCTCCTCCTTCTACTGCCCCCC
CTCCACCCTTATTCCGGTGACCCGCGAGCTGGCTGGCAACACCTACACAT
TTTTGCAGTCCCATGTACATAACCTTCCTACAGATCTCCCAAATGGTGGC
CGGGGTCGTCATCACCCTCTGCGGCTTCCACTACATCGCCCGCGACCCGT
CCACCTGCGGCGTCGTCCCTCATGTCCTCTACTTCCAAGGCCTTATTTAT
GGTTCCTACCTTTATCTCTTCCTCGAGTTCCTCATCAAGCGCTTTTTTTC
CTCCTCTAAGTACCACCACGTGACGGTCCTGAGCTTTACATGGACCGCCT
ACGCTGCCCGGCACCCGGGGGTGTATTTTATCGCCATGAACTACACCGTG
CACGCCGTCATGTACTCCTACTTCTTCCTCATGGCCATCGATGCGAAACC
CAAATGGCTCAATGTGACGTGGCTCTGGCGTACTGGAATTTCTTCCTGGC
CGTTTTTTCCACCCTGGGCGCCATCCGGATCGTCCCCCACCTGTTGTGGT
TCTCGGCCACCCACACATTCAAGGACACGGTGTGCACTCCGCCGCAGATG
ATGAATGGGGACGGAGCCTCGGGCTTGTGGTGCTTGTTGTTTACGCTCTC
CAAAGTAATTGAGTTGCTGGACACGCTCTTTGTCTGTCTGAAGGGACGGA
CGCCCATCTTCTTGCATTGTTCTGGCAGCTATTCCCCTGGACCAAGCCAT
TCTACACCCCTTTCGAGAAGAATTTCGACGTCCGGCCATGGTTTATGTTC
GTACATGGGAACTGGTGGGTGCCCGTGGTAGCCATCGCGCTGTATGGCGT
GATGATAGTCACCTTGCCGAAATACACCGCCAAAAAGCCAGTCAAGATGC
TGGACGATGGCATTAACGCCACCACCTGCACCTCCTCCTTCTACTGCCCC
CCCTCCACCCTTATTCCGGTGACCCGCGAGCTGGCTGGCAACACCTACAC
ATTTTTGCAG back to top
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