jgi.p|Nanoce1779_2|592537, mRNA_5446 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592537
Unique NamemRNA_5446
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1912
Alignment locationscaffold_13:443059..444970 -

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Properties
Property NameValue
TranscriptId592623
TrackFilteredModels2
ProteinId592537
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:443059..444970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592537gene_5446Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592537mRNA_5446-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5446CDS_5446Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5446 ID=mRNA_5446|Name=jgi.p|Nanoce1779_2|592537|organism=Nannochloropsis oceanica|type=mRNA|length=1912bp
AGGGACATCCGACGCGATGGCACGTTCCCAACGAAAATCCCGGGCCGCCT
TATTCCTCCTCGCTCATACTTCTGCCCTCCTGCTCCTCCGGCAACGAGCT
TTAAGCTTCAGCGTCCCCTCCCCCATCTCTAGCGTCGAGCGATTCAAGCG
TCTACAGAACCAGTTCGACCTGCGCGGGACGGCGTTGGTCAGCAATGGCA
AGGGCAAGATGGTGACACTCTCCCCCACCGAGGCATTCTTTTTAGGCCAG
GCATTTGCGACTTGGGTCGTTCGCCAGCAGCAAGCGCCCGCGCCCATGAC
GATTGCTGTAGGCCGAGATAGTCGGTTGACAGGACCGGCGCTTTCATACA
GCTTACTAGAGGGAGTGGAGGCCGTATGTGGCTCAGATGCAGTTCTGGAC
CTGGGCTTGTGCTCTACTCCTGCGACCTTCCATGCGTGTCTCGACCCGCC
CCCGGGACTTGCCGTTGCAGGCTCCATTATGGTCACAGCTTCCCATCTAC
CCATGGACCGGAATGGCATGAAAATGTTTTCTCGTGTGGTCAAAGGAGGC
TTGGGTGAGAAAGAGGTGTCAGAAGTCGTCGCGCTTGCGAGCCAGCTGTA
CGAGGAGCAGCACGGGGTGTACCCTGGTCTTGACCTTCCCACCACTCGCC
CCCATCCTCAATGGAAACAAGCCCATAACTTTCTCCCAAACATTTACGGC
GAGCATCTTGCACAACTCATTCGGAATAGCGCTGCAAATGGCCAGAAATG
GGAGAGGCCCTTGGAGGGGATGAGGATTTTAGTCAACCCAGGGAATGGGG
CGGGGGGCTTCTTTCTTCGCGTTCTCGAAGCATGCGGAGCTGATACCACG
GGGAGCTTCAATGTCGAACCTGACGGTCACTTTCCCAATCAGAACCCTAA
TCCCGAGGACCCTGCCACAATGAAAGCGACCATGGAAGCAGTAGCAGCAG
CTAAGGCGGATTTGGCCGTGATTCTTGACCCGGACTGCGATCGAGTGGGG
TTGGTGGGCGGGGGAGGTAAGAAAGCCCCGGCGGGGTTTCAGCCGCTGGC
TTTGAATCGAAATCGCTTGATTGCGATGGCGGCGGCGGTGGTGTTGCGGG
ATCATCCGGGTAGTACAATTGTGACAGATTCAGTGACAAGCGACGGGTTG
TCGAGATTCATTTCAAGGAGGGGGGGGAAGCATTTGAGGTATAAAAAAGG
TTACCGCCTGGTGATTGAAAAGGCGCAGAGCTTGCCTGATTGTTGGTTGG
CCATGGAATGTAGTGGGCATGCGGCCTTTCGAGAGAATGGATTTTTGGAC
GATGGAGCGTTTTTGGCCATCAAATTGATTGGAGAGATGGCCTGTCCGGT
GTCTGTTTTGACAGGTGGGGGGAAAATGGGTATTGCCATGCCGACGGACG
CGGCGAAAGGCAAGGATTTGAGCGCGTTAATTGCGGATTTGGACGAACCG
GTAGAGTATGCGGAGATACGACTAGAGGTGCGGGAGGGGTGTGACAAAGG
AGTGGCGACTGAGCACGTATTAAAGGCGTTCGAGTGGGTGGTGAGTATCA
ACTCGGTTTGGAAAATGGAGAAGGAGAATTACGAGGGTTTGCGGGCCAAA
GTTCAGGAAGTTAGAGGGGAAAAGACAGGTTGGTTGCATTTCAGACCGTC
CTTGCACGATCCAGTGGTGGCTTTGACGTGTGAGAGCGAGTTGGACGGGG
GGATTGCGGCGATGTTGGGCACTTTGATTGATGGGGGTATGTTGGATGCG
ACGAATGATATGGTGGATTGGTCAAGCTGTACGGAATATTTGCGTGGGAG
GCGAGGACCGCGGAGCTTGTAAAAAATAAGCTGTGTATGGGGTGGTAGGG
GTTGTGTGGTGTGTGGGAGTGTGGGGTGGGGAGGTTAGAAAATGTATCGC
ATGACTTGGCAG
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protein sequence of jgi.p|Nanoce1779_2|592537

>mRNA_5446-protein ID=mRNA_5446-protein|Name=jgi.p|Nanoce1779_2|592537|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MARSQRKSRAALFLLAHTSALLLLRQRALSFSVPSPISSVERFKRLQNQF
DLRGTALVSNGKGKMVTLSPTEAFFLGQAFATWVVRQQQAPAPMTIAVGR
DSRLTGPALSYSLLEGVEAVCGSDAVLDLGLCSTPATFHACLDPPPGLAV
AGSIMVTASHLPMDRNGMKMFSRVVKGGLGEKEVSEVVALASQLYEEQHG
VYPGLDLPTTRPHPQWKQAHNFLPNIYGEHLAQLIRNSAANGQKWERPLE
GMRILVNPGNGAGGFFLRVLEACGADTTGSFNVEPDGHFPNQNPNPEDPA
TMKATMEAVAAAKADLAVILDPDCDRVGLVGGGGKKAPAGFQPLALNRNR
LIAMAAAVVLRDHPGSTIVTDSVTSDGLSRFISRRGGKHLRYKKGYRLVI
EKAQSLPDCWLAMECSGHAAFRENGFLDDGAFLAIKLIGEMACPVSVLTG
GGKMGIAMPTDAAKGKDLSALIADLDEPVEYAEIRLEVREGCDKGVATEH
VLKAFEWVVSINSVWKMEKENYEGLRAKVQEVRGEKTGWLHFRPSLHDPV
VALTCESELDGGIAAMLGTLIDGGMLDATNDMVDWSSCTEYLRGRRGPRS
L*
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mRNA from alignment at scaffold_13:443059..444970-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5446 ID=mRNA_5446|Name=jgi.p|Nanoce1779_2|592537|organism=Nannochloropsis oceanica|type=mRNA|length=1912bp|location=Sequence derived from alignment at scaffold_13:443059..444970- (Nannochloropsis oceanica)
AGGGACATCCGACGCGATGGCACGTTCCCAACGAAAATCCCGGGCCGCCT
TATTCCTCCTCGCTCATACTTCTGCCCTCCTGCTCCTCCGGCAACGAGCT
TTAAGCTTCAGCGTCCCCTCCCCCATCTCTAGCGTCGAGCGATTCAAGCG
TCTACAGAACCAGTTCGACCTGCGCGGGACGGCGTTGGTCAGCAATGGCA
AGGGCAAGATGGTGACACTCTCCCCCACCGAGGCATTCTTTTTAGGCCAG
GCATTTGCGACTTGGGTCGTTCGCCAGCAGCAAGCGCCCGCGCCCATGAC
GATTGCTGTAGGCCGAGATAGTCGGTTGACAGGACCGGCGCTTTCATACA
GCTTACTAGAGGGAGTGGAGGCCGTATGTGGCTCAGATGCAGTTCTGGAC
CTGGGCTTGTGCTCTACTCCTGCGACCTTCCATGCGTGTCTCGACCCGCC
CCCGGGACTTGCCGTTGCAGGCTCCATTATGGTCACAGCTTCCCATCTAC
CCATGGACCGGAATGGCATGAAAATGTTTTCTCGTGTGGTCAAAGGAGGC
TTGGGTGAGAAAGAGGTGTCAGAAGTCGTCGCGCTTGCGAGCCAGCTGTA
CGAGGAGCAGCACGGGGTGTACCCTGGTCTTGACCTTCCCACCACTCGCC
CCCATCCTCAATGGAAACAAGCCCATAACTTTCTCCCAAACATTTACGGC
GAGCATCTTGCACAACTCATTCGGAATAGCGCTGCAAATGGCCAGAAATG
GGAGAGGCCCTTGGAGGGGATGAGGATTTTAGTCAACCCAGGGAATGGGG
CGGGGGGCTTCTTTCTTCGCGTTCTCGAAGCATGCGGAGCTGATACCACG
GGGAGCTTCAATGTCGAACCTGACGGTCACTTTCCCAATCAGAACCCTAA
TCCCGAGGACCCTGCCACAATGAAAGCGACCATGGAAGCAGTAGCAGCAG
CTAAGGCGGATTTGGCCGTGATTCTTGACCCGGACTGCGATCGAGTGGGG
TTGGTGGGCGGGGGAGGTAAGAAAGCCCCGGCGGGGTTTCAGCCGCTGGC
TTTGAATCGAAATCGCTTGATTGCGATGGCGGCGGCGGTGGTGTTGCGGG
ATCATCCGGGTAGTACAATTGTGACAGATTCAGTGACAAGCGACGGGTTG
TCGAGATTCATTTCAAGGAGGGGGGGGAAGCATTTGAGGTATAAAAAAGG
TTACCGCCTGGTGATTGAAAAGGCGCAGAGCTTGCCTGATTGTTGGTTGG
CCATGGAATGTAGTGGGCATGCGGCCTTTCGAGAGAATGGATTTTTGGAC
GATGGAGCGTTTTTGGCCATCAAATTGATTGGAGAGATGGCCTGTCCGGT
GTCTGTTTTGACAGGTGGGGGGAAAATGGGTATTGCCATGCCGACGGACG
CGGCGAAAGGCAAGGATTTGAGCGCGTTAATTGCGGATTTGGACGAACCG
GTAGAGTATGCGGAGATACGACTAGAGGTGCGGGAGGGGTGTGACAAAGG
AGTGGCGACTGAGCACGTATTAAAGGCGTTCGAGTGGGTGGTGAGTATCA
ACTCGGTTTGGAAAATGGAGAAGGAGAATTACGAGGGTTTGCGGGCCAAA
GTTCAGGAAGTTAGAGGGGAAAAGACAGGTTGGTTGCATTTCAGACCGTC
CTTGCACGATCCAGTGGTGGCTTTGACGTGTGAGAGCGAGTTGGACGGGG
GGATTGCGGCGATGTTGGGCACTTTGATTGATGGGGGTATGTTGGATGCG
ACGAATGATATGGTGGATTGGTCAAGCTGTACGGAATATTTGCGTGGGAG
GCGAGGACCGCGGAGCTTGTAAAAAATAAGCTGTGTATGGGGTGGTAGGG
GTTGTGTGGTGTGTGGGAGTGTGGGGTGGGGAGGTTAGAAAATGTATCGC
ATGACTTGGCAG
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Coding sequence (CDS) from alignment at scaffold_13:443059..444970-

>mRNA_5446 ID=mRNA_5446|Name=jgi.p|Nanoce1779_2|592537|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at scaffold_13:443059..444970- (Nannochloropsis oceanica)
ATGGCACGTTCCCAACGAAAATCCCGGGCCGCCTTATTCCTCCTCGCTCA
TACTTCTGCCCTCCTGCTCCTCCGGCAACGAGCTTTAAGCTTCAGCGTCC
CCTCCCCCATCTCTAGCGTCGAGCGATTCAAGCGTCTACAGAACCAGTTC
GACCTGCGCGGGACGGCGTTGGTCAGCAATGGCAAGGGCAAGATGGTGAC
ACTCTCCCCCACCGAGGCATTCTTTTTAGGCCAGGCATTTGCGACTTGGG
TCGTTCGCCAGCAGCAAGCGCCCGCGCCCATGACGATTGCTGTAGGCCGA
GATAGTCGGTTGACAGGACCGGCGCTTTCATACAGCTTACTAGAGGGAGT
GGAGGCCGTATGTGGCTCAGATGCAGTTCTGGACCTGGGCTTGTGCTCTA
CTCCTGCGACCTTCCATGCGTGTCTCGACCCGCCCCCGGGACTTGCCGTT
GCAGGCTCCATTATGGTCACAGCTTCCCATCTACCCATGGACCGGAATGG
CATGAAAATGTTTTCTCGTGTGGTCAAAGGAGGCTTGGGTGAGAAAGAGG
TGTCAGAAGTCGTCGCGCTTGCGAGCCAGCTGTACGAGGAGCAGCACGGG
GTGTACCCTGGTCTTGACCTTCCCACCACTCGCCCCCATCCTCAATGGAA
ACAAGCCCATAACTTTCTCCCAAACATTTACGGCGAGCATCTTGCACAAC
TCATTCGGAATAGCGCTGCAAATGGCCAGAAATGGGAGAGGCCCTTGGAG
GGGATGAGGATTTTAGTCAACCCAGGGAATGGGGCGGGGGGCTTCTTTCT
TCGCGTTCTCGAAGCATGCGGAGCTGATACCACGGGGAGCTTCAATGTCG
AACCTGACGGTCACTTTCCCAATCAGAACCCTAATCCCGAGGACCCTGCC
ACAATGAAAGCGACCATGGAAGCAGTAGCAGCAGCTAAGGCGGATTTGGC
CGTGATTCTTGACCCGGACTGCGATCGAGTGGGGTTGGTGGGCGGGGGAG
GTAAGAAAGCCCCGGCGGGGTTTCAGCCGCTGGCTTTGAATCGAAATCGC
TTGATTGCGATGGCGGCGGCGGTGGTGTTGCGGGATCATCCGGGTAGTAC
AATTGTGACAGATTCAGTGACAAGCGACGGGTTGTCGAGATTCATTTCAA
GGAGGGGGGGGAAGCATTTGAGGTATAAAAAAGGTTACCGCCTGGTGATT
GAAAAGGCGCAGAGCTTGCCTGATTGTTGGTTGGCCATGGAATGTAGTGG
GCATGCGGCCTTTCGAGAGAATGGATTTTTGGACGATGGAGCGTTTTTGG
CCATCAAATTGATTGGAGAGATGGCCTGTCCGGTGTCTGTTTTGACAGGT
GGGGGGAAAATGGGTATTGCCATGCCGACGGACGCGGCGAAAGGCAAGGA
TTTGAGCGCGTTAATTGCGGATTTGGACGAACCGGTAGAGTATGCGGAGA
TACGACTAGAGGTGCGGGAGGGGTGTGACAAAGGAGTGGCGACTGAGCAC
GTATTAAAGGCGTTCGAGTGGGTGGTGAGTATCAACTCGGTTTGGAAAAT
GGAGAAGGAGAATTACGAGGGTTTGCGGGCCAAAGTTCAGGAAGTTAGAG
GGGAAAAGACAGGTTGGTTGCATTTCAGACCGTCCTTGCACGATCCAGTG
GTGGCTTTGACGTGTGAGAGCGAGTTGGACGGGGGGATTGCGGCGATGTT
GGGCACTTTGATTGATGGGGGTATGTTGGATGCGACGAATGATATGGTGG
ATTGGTCAAGCTGTACGGAATATTTGCGTGGGAGGCGAGGACCGCGGAGC
TTGTAA
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Synonyms
Publications