Properties
| Property Name | Value |
|---|
| TranscriptId | 592612 |
| Track | FilteredModels2 |
| ProteinId | 592526 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:433280..434852 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5442 ID=mRNA_5442|Name=jgi.p|Nanoce1779_2|592526|organism=Nannochloropsis oceanica|type=mRNA|length=1573bp
ACAGGGGTGCGATTTGTCCGAACCCTAAACCATCTACGACCCGTCCATCG
CAACTCTCCGCAAGCAAGCATGCCACGACAACGGCAAGCCCTCCTGCTGA
CAGTGCTTTTATATGTGCTTGTCTGGGTAGGGGCCGGTGTCTTGGAGTCT
GCGGCTGGAGCATCATCAGCGCAGGAGGAGCAGCACCAGGATCCGCCGCC
AGCTCCCTTACAGCAGGAGCAGCCGCCGCCGCCGCAAGAGCCAGTACAAG
CACCATTCGGAGAGGAAGTACAAACGTCCCCACATAGAAATGACCAAGTA
GCACCACCAACTAACACAGTATCCCTCGCTACTCCTGCCGATGACTTAAA
CCCCCCCCCTCCTGCAGAAGCGGCTATCCCCGCTGTCCCCGCCGCTCCCG
ATGTAGTGGTGTCCCCCGTTTCTCCCACCGAAATCCCGCTTACTCCTCGG
CAGCCGGTCGAAACCAATGATACCATGGTGCTGAAAGCAGCCGCACTCTT
AATGGTGGACGTGAACCCGGTGGAAGGAAAGGCGATTGGTTGGCGTGTTG
TGCATGCCGACAAGCAAAGCTTTGCAGCAGGCATCACTTACTATTTGCAG
ATTGAGCTACGGACTAAATCCCGCTGTGAGATACACGAGAAGAAGGTTTT
TGTCGAGGCTAAGACGGGGAATCTTATTCCAGGAGGATTGGGAGACCTGT
TGCCTTGCGATCCGTCCTTACCGCCCGCCGATTATTTGACTAAAAAAGGG
TTGAGGGGAGGGTGATGGTGGGAAGCAGTAGTGGAGAGAAAAAGGAAAAG
AAAAATGGGATTGAAAGAATTCGGCGAGTGAATAAAATTGGGGGACTCTT
GATATTTTAATCTTGTCGGACGAGATATAAAAGGGAAATAACATTGCAAG
GAGGTGTCGATGGAAGGGGGAGGCGGGCGCTATGGATGTAGGTCCGAACT
CCAGTATGACAAAGAAGCAGGAAGGAAAGGAGGAGGGTGCCACAAATATG
CATGAGAATGTTGTAGCGGGCTCTAGACTGGAGATGAATCGACAGGTAAA
AATGAGGCATCCGTGCATGGGGCATAAGCAATATACGAGTGTCCGTCGAG
GGCCGGTACGAGTGAATGATGTTAGCAGAGAAAAGGCCACTCAAAGCAGA
GAGCTGTGAACGTATGACGAGACGTCCGTGAGAAGAAAGTTGTATCGGAG
ATGCTCGAGAGAATCAAAATATATTTCACTGGCAGCTCGAGCGGAGACGC
GTTGCGTGTGTGTGTATGCGTGTGACGGAGAGTAACTAAGAAAAAAATCG
AGCGGTTGCATGAACGATCATGACATTAAATAAGGACAAAGCAAGAAGAT
ACATATATGTGTGAGCAAGGGCGCACATCACGCACACACAGACGGAATAG
TCTGTGTGTCAGAGCACAGATATAGTTCCGGTCCAAAAGCGCGAGGAAAT
CCGCACAGATTGAAGGGTAATTGAGCGATAAAAAGAACCTTTGCAATAAA
GGGGGAAAGTCACTGCAATGGAATGATATAAAAAAGATGGCAATGAAGTT
AAGATGATGCATTTTGACATTTT back to topprotein sequence of jgi.p|Nanoce1779_2|592526 >mRNA_5442-protein ID=mRNA_5442-protein|Name=jgi.p|Nanoce1779_2|592526|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MPRQRQALLLTVLLYVLVWVGAGVLESAAGASSAQEEQHQDPPPAPLQQE
QPPPPQEPVQAPFGEEVQTSPHRNDQVAPPTNTVSLATPADDLNPPPPAE
AAIPAVPAAPDVVVSPVSPTEIPLTPRQPVETNDTMVLKAAALLMVDVNP
VEGKAIGWRVVHADKQSFAAGITYYLQIELRTKSRCEIHEKKVFVEAKTG
NLIPGGLGDLLPCDPSLPPADYLTKKGLRGG* back to topmRNA from alignment at scaffold_13:433280..434852- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5442 ID=mRNA_5442|Name=jgi.p|Nanoce1779_2|592526|organism=Nannochloropsis oceanica|type=mRNA|length=1573bp|location=Sequence derived from alignment at scaffold_13:433280..434852- (Nannochloropsis oceanica)
ACAGGGGTGCGATTTGTCCGAACCCTAAACCATCTACGACCCGTCCATCG
CAACTCTCCGCAAGCAAGCATGCCACGACAACGGCAAGCCCTCCTGCTGA
CAGTGCTTTTATATGTGCTTGTCTGGGTAGGGGCCGGTGTCTTGGAGTCT
GCGGCTGGAGCATCATCAGCGCAGGAGGAGCAGCACCAGGATCCGCCGCC
AGCTCCCTTACAGCAGGAGCAGCCGCCGCCGCCGCAAGAGCCAGTACAAG
CACCATTCGGAGAGGAAGTACAAACGTCCCCACATAGAAATGACCAAGTA
GCACCACCAACTAACACAGTATCCCTCGCTACTCCTGCCGATGACTTAAA
CCCCCCCCCTCCTGCAGAAGCGGCTATCCCCGCTGTCCCCGCCGCTCCCG
ATGTAGTGGTGTCCCCCGTTTCTCCCACCGAAATCCCGCTTACTCCTCGG
CAGCCGGTCGAAACCAATGATACCATGGTGCTGAAAGCAGCCGCACTCTT
AATGGTGGACGTGAACCCGGTGGAAGGAAAGGCGATTGGTTGGCGTGTTG
TGCATGCCGACAAGCAAAGCTTTGCAGCAGGCATCACTTACTATTTGCAG
ATTGAGCTACGGACTAAATCCCGCTGTGAGATACACGAGAAGAAGGTTTT
TGTCGAGGCTAAGACGGGGAATCTTATTCCAGGAGGATTGGGAGACCTGT
TGCCTTGCGATCCGTCCTTACCGCCCGCCGATTATTTGACTAAAAAAGGG
TTGAGGGGAGGGTGATGGTGGGAAGCAGTAGTGGAGAGAAAAAGGAAAAG
AAAAATGGGATTGAAAGAATTCGGCGAGTGAATAAAATTGGGGGACTCTT
GATATTTTAATCTTGTCGGACGAGATATAAAAGGGAAATAACATTGCAAG
GAGGTGTCGATGGAAGGGGGAGGCGGGCGCTATGGATGTAGGTCCGAACT
CCAGTATGACAAAGAAGCAGGAAGGAAAGGAGGAGGGTGCCACAAATATG
CATGAGAATGTTGTAGCGGGCTCTAGACTGGAGATGAATCGACAGGTAAA
AATGAGGCATCCGTGCATGGGGCATAAGCAATATACGAGTGTCCGTCGAG
GGCCGGTACGAGTGAATGATGTTAGCAGAGAAAAGGCCACTCAAAGCAGA
GAGCTGTGAACGTATGACGAGACGTCCGTGAGAAGAAAGTTGTATCGGAG
ATGCTCGAGAGAATCAAAATATATTTCACTGGCAGCTCGAGCGGAGACGC
GTTGCGTGTGTGTGTATGCGTGTGACGGAGAGTAACTAAGAAAAAAATCG
AGCGGTTGCATGAACGATCATGACATTAAATAAGGACAAAGCAAGAAGAT
ACATATATGTGTGAGCAAGGGCGCACATCACGCACACACAGACGGAATAG
TCTGTGTGTCAGAGCACAGATATAGTTCCGGTCCAAAAGCGCGAGGAAAT
CCGCACAGATTGAAGGGTAATTGAGCGATAAAAAGAACCTTTGCAATAAA
GGGGGAAAGTCACTGCAATGGAATGATATAAAAAAGATGGCAATGAAGTT
AAGATGATGCATTTTGACATTTT back to topCoding sequence (CDS) from alignment at scaffold_13:433280..434852- >mRNA_5442 ID=mRNA_5442|Name=jgi.p|Nanoce1779_2|592526|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_13:433280..434852- (Nannochloropsis oceanica)
ATGCCACGACAACGGCAAGCCCTCCTGCTGACAGTGCTTTTATATGTGCT
TGTCTGGGTAGGGGCCGGTGTCTTGGAGTCTGCGGCTGGAGCATCATCAG
CGCAGGAGGAGCAGCACCAGGATCCGCCGCCAGCTCCCTTACAGCAGGAG
CAGCCGCCGCCGCCGCAAGAGCCAGTACAAGCACCATTCGGAGAGGAAGT
ACAAACGTCCCCACATAGAAATGACCAAGTAGCACCACCAACTAACACAG
TATCCCTCGCTACTCCTGCCGATGACTTAAACCCCCCCCCTCCTGCAGAA
GCGGCTATCCCCGCTGTCCCCGCCGCTCCCGATGTAGTGGTGTCCCCCGT
TTCTCCCACCGAAATCCCGCTTACTCCTCGGCAGCCGGTCGAAACCAATG
ATACCATGGTGCTGAAAGCAGCCGCACTCTTAATGGTGGACGTGAACCCG
GTGGAAGGAAAGGCGATTGGTTGGCGTGTTGTGCATGCCGACAAGCAAAG
CTTTGCAGCAGGCATCACTTACTATTTGCAGATTGAGCTACGGACTAAAT
CCCGCTGTGAGATACACGAGAAGAAGGTTTTTGTCGAGGCTAAGACGGGG
AATCTTATTCCAGGAGGATTGGGAGACCTGTTGCCTTGCGATCCGTCCTT
ACCGCCCGCCGATTATTTGACTAAAAAAGGGTTGAGGGGAGGGTGA back to top
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