jgi.p|Nanoce1779_2|566639, mRNA_5440 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566639
Unique NamemRNA_5440
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1059
Alignment locationscaffold_13:426682..427740 -

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Properties
Property NameValue
TranscriptId566725
TrackFilteredModels2
ProteinId566639
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:426682..427740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566639gene_5440Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5440CDS_5440Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566639mRNA_5440-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5440 ID=mRNA_5440|Name=jgi.p|Nanoce1779_2|566639|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp
ATGCGAGTGATGAATAGTTGGCCCTACTACTACTCCAAAGTCGTTCCTCC
CACCCCTGTCCTTCCGTCCTCCTGGAAACTCGCCTGCATACTCCGGGACC
GCGCCGAAGGTCGCAATGTCCTAATGGGCTGTCGCTTCTGCGGTGAACTG
GATGTCTTCACGGAGCACATGCGTGAGCAAGAATCCTCCTGTCCCACTCA
ACTACGGACATGGGTCGTGCCCTGTCTGTGCCCGGCCCTTGTTCACCTTC
GATGCCTGGAAGCCCACGTGGCCTCTGCACGATTGCAACCGTCTTTGAGC
CAGGCACATTCTTCCCCATCTTTTTCATCCATTCCCACTGGTTACGGTCT
GTCTCCACCGGCACGGCGAAAATGGATCTCCTACGACACTGCTCTCTTGC
CTGCCGCCGCGAGCGAATCGGAAGGAGAGAAGGAGTCGTTGGGACGGTGC
CAAGGGTGCGACTCTTTGTACCTACCTGGCTTTCGGTTACCCGCCGTAGG
GGAGCTTGTTTCAGTGACATGGCAGGATGAACTCGCCTGGAAGAGAGCGG
GGGATTGCATTTTGATGTGGTTGATGGGTGTGGCAATCGTGGCATTGTCT
GAGGCGTTATATCAGGGGAACGGGGAGCTGCTGGCTTGGCCAGAGGAGGG
GGGTCAGGTGCTCTTCTGGTGGCTTCTGCAGTATGTGATTTCGTTGAACA
TTTTCCTGTCGCCTAGATTTGCAAGGGTGGTGGACCTGCTGTGGCTTGGG
CCGGTTTTCCGGTTTTATGCCAAGTTGTACTTGTATTTCTTGATGGCCAC
GTTTGGGATGCTTTGTTTTTTTACGCCTCTTCCTAAAAGGGTGTTGGGGG
TTTGCATTATGGAGGGTTTGGGGATGCCTGCATGGTTGATGCTAGTTGGG
GGATGGGGGAATTTTGCCGTGCTCGCCACGATAACCTCAATTGTGATTTT
CTTGTTTTGGAAGACAAATTATCGCATACCGACGATTGCGGATCTGAGGG
AGACTGAGCCGGGGGGGTCGGAATTCTTGCATCCCATGTTGTCGATTGGC
GGGGCATGA
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protein sequence of jgi.p|Nanoce1779_2|566639

>mRNA_5440-protein ID=mRNA_5440-protein|Name=jgi.p|Nanoce1779_2|566639|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MRVMNSWPYYYSKVVPPTPVLPSSWKLACILRDRAEGRNVLMGCRFCGEL
DVFTEHMREQESSCPTQLRTWVVPCLCPALVHLRCLEAHVASARLQPSLS
QAHSSPSFSSIPTGYGLSPPARRKWISYDTALLPAAASESEGEKESLGRC
QGCDSLYLPGFRLPAVGELVSVTWQDELAWKRAGDCILMWLMGVAIVALS
EALYQGNGELLAWPEEGGQVLFWWLLQYVISLNIFLSPRFARVVDLLWLG
PVFRFYAKLYLYFLMATFGMLCFFTPLPKRVLGVCIMEGLGMPAWLMLVG
GWGNFAVLATITSIVIFLFWKTNYRIPTIADLRETEPGGSEFLHPMLSIG
GA*
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mRNA from alignment at scaffold_13:426682..427740-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5440 ID=mRNA_5440|Name=jgi.p|Nanoce1779_2|566639|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp|location=Sequence derived from alignment at scaffold_13:426682..427740- (Nannochloropsis oceanica)
ATGCGAGTGATGAATAGTTGGCCCTACTACTACTCCAAAGTCGTTCCTCC
CACCCCTGTCCTTCCGTCCTCCTGGAAACTCGCCTGCATACTCCGGGACC
GCGCCGAAGGTCGCAATGTCCTAATGGGCTGTCGCTTCTGCGGTGAACTG
GATGTCTTCACGGAGCACATGCGTGAGCAAGAATCCTCCTGTCCCACTCA
ACTACGGACATGGGTCGTGCCCTGTCTGTGCCCGGCCCTTGTTCACCTTC
GATGCCTGGAAGCCCACGTGGCCTCTGCACGATTGCAACCGTCTTTGAGC
CAGGCACATTCTTCCCCATCTTTTTCATCCATTCCCACTGGTTACGGTCT
GTCTCCACCGGCACGGCGAAAATGGATCTCCTACGACACTGCTCTCTTGC
CTGCCGCCGCGAGCGAATCGGAAGGAGAGAAGGAGTCGTTGGGACGGTGC
CAAGGGTGCGACTCTTTGTACCTACCTGGCTTTCGGTTACCCGCCGTAGG
GGAGCTTGTTTCAGTGACATGGCAGGATGAACTCGCCTGGAAGAGAGCGG
GGGATTGCATTTTGATGTGGTTGATGGGTGTGGCAATCGTGGCATTGTCT
GAGGCGTTATATCAGGGGAACGGGGAGCTGCTGGCTTGGCCAGAGGAGGG
GGGTCAGGTGCTCTTCTGGTGGCTTCTGCAGTATGTGATTTCGTTGAACA
TTTTCCTGTCGCCTAGATTTGCAAGGGTGGTGGACCTGCTGTGGCTTGGG
CCGGTTTTCCGGTTTTATGCCAAGTTGTACTTGTATTTCTTGATGGCCAC
GTTTGGGATGCTTTGTTTTTTTACGCCTCTTCCTAAAAGGGTGTTGGGGG
TTTGCATTATGGAGGGTTTGGGGATGCCTGCATGGTTGATGCTAGTTGGG
GGATGGGGGAATTTTGCCGTGCTCGCCACGATAACCTCAATTGTGATTTT
CTTGTTTTGGAAGACAAATTATCGCATACCGACGATTGCGGATCTGAGGG
AGACTGAGCCGGGGGGGTCGGAATTCTTGCATCCCATGTTGTCGATTGGC
GGGGCATGA
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Coding sequence (CDS) from alignment at scaffold_13:426682..427740-

>mRNA_5440 ID=mRNA_5440|Name=jgi.p|Nanoce1779_2|566639|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at scaffold_13:426682..427740- (Nannochloropsis oceanica)
ATGCGAGTGATGAATAGTTGGCCCTACTACTACTCCAAAGTCGTTCCTCC
CACCCCTGTCCTTCCGTCCTCCTGGAAACTCGCCTGCATACTCCGGGACC
GCGCCGAAGGTCGCAATGTCCTAATGGGCTGTCGCTTCTGCGGTGAACTG
GATGTCTTCACGGAGCACATGCGTGAGCAAGAATCCTCCTGTCCCACTCA
ACTACGGACATGGGTCGTGCCCTGTCTGTGCCCGGCCCTTGTTCACCTTC
GATGCCTGGAAGCCCACGTGGCCTCTGCACGATTGCAACCGTCTTTGAGC
CAGGCACATTCTTCCCCATCTTTTTCATCCATTCCCACTGGTTACGGTCT
GTCTCCACCGGCACGGCGAAAATGGATCTCCTACGACACTGCTCTCTTGC
CTGCCGCCGCGAGCGAATCGGAAGGAGAGAAGGAGTCGTTGGGACGGTGC
CAAGGGTGCGACTCTTTGTACCTACCTGGCTTTCGGTTACCCGCCGTAGG
GGAGCTTGTTTCAGTGACATGGCAGGATGAACTCGCCTGGAAGAGAGCGG
GGGATTGCATTTTGATGTGGTTGATGGGTGTGGCAATCGTGGCATTGTCT
GAGGCGTTATATCAGGGGAACGGGGAGCTGCTGGCTTGGCCAGAGGAGGG
GGGTCAGGTGCTCTTCTGGTGGCTTCTGCAGTATGTGATTTCGTTGAACA
TTTTCCTGTCGCCTAGATTTGCAAGGGTGGTGGACCTGCTGTGGCTTGGG
CCGGTTTTCCGGTTTTATGCCAAGTTGTACTTGTATTTCTTGATGGCCAC
GTTTGGGATGCTTTGTTTTTTTACGCCTCTTCCTAAAAGGGTGTTGGGGG
TTTGCATTATGGAGGGTTTGGGGATGCCTGCATGGTTGATGCTAGTTGGG
GGATGGGGGAATTTTGCCGTGCTCGCCACGATAACCTCAATTGTGATTTT
CTTGTTTTGGAAGACAAATTATCGCATACCGACGATTGCGGATCTGAGGG
AGACTGAGCCGGGGGGGTCGGAATTCTTGCATCCCATGTTGTCGATTGGC
GGGGCATGA
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Synonyms
Publications