jgi.p|Nanoce1779_2|551303, mRNA_544 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|551303
Unique Name	mRNA_544
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1393
Alignment location	scaffold_3:1315604..1317398 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	551389
Track	FilteredModels2
ProteinId	551303

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1315604..1317398 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|551303	gene_544	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|551303	mRNA_544-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_544	CDS_544	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1315604..1317398-
coding sequence from alignment at scaffold_3:1315604..1317398-

mRNA sequence

>mRNA_544 ID=mRNA_544|Name=jgi.p|Nanoce1779_2|551303|organism=Nannochloropsis oceanica|type=mRNA|length=1393bp
CAGGACCGCGCCCCCACGACGACCAATTCCTACGCGCGTGCCCCCACAGC
CCGCAGCCTATCGACGCCTTCGAATGCCCAAAGCTGCCTTGAGTTTCCTC
CTTTTTGCGACCGTAATGGTTAGCAGCCTCCTGATGGCCACCGTAGCAGG
CGTGGCGCGACGGCCGGCGGCCGGCTTTGCCAGCCTTGGCTCGTGCTTCA
GCCGTGCTGTCCCCACGATCGCATTTGCTTCCTTCAGTACGCTCAGCAGC
AATGGTAGAATAAGAGGAAACTGGTTAAGACCCTTTTCCGGCAGGTCTCG
CGGCTTTGCCACCATGAATTCAGGCAGCAGCAGCAGCTCGAGCGCCATAG
AGGGAGGAGAACGGAAGAAGCGTGTGCTGTCAGGCGTGCAGCCCACGGGT
TCTTTACACCTGGGCAATTATCTAGGGGCCATCCGCCAGTGGGTCAAGAA
CCAGGACGAGTACGAATCCCTCTTTTGCGTTGTGGACTTGCATGCCATCA
CGGCCCCACACGACCCCAAGCGCCTCCGGCAAGAGACCATCGAAGCCGCT
GCCCTGTACTTGGCCGCTGGAATCGATCCTTCCAAAAGCACTGTCTTTGT
ACAGTCCCACGTCCTGGCCCACACGGAACTCACCTGGCTTCTTAACTGCG
TGACGCCCATGAACTGGTTGGAGCGGATGATTCAATTCAAAGAGAAGGCG
GTCAAGCAAGGGGAAAACGTGGGGGTGGGTCTTTTCGACTACCCCGTATT
GATGGCTGCGGATATTTTGCTGTACCAGGCGGAGCTTGTGCCGGTGGGAG
AGGATCAGCGGCAGCATTTGGAGTTGACACGAGATATCGCTCGGCGCTTC
AACGACCAGTTTTGTAATAAGAAGGCCAAGAGGAGGAAGGTGTTTCGTGA
CCCTGAAGCACTCATCGTAAAGGAAGGCGCTCGCGTAATGTCCCTCCTAG
ATGGGACCAGCAAAATGAGCAAGTCGGCCGAAAACGACGGGAGTCGGATC
AACCTCCTCGATAGCCCCGAGACGATTCGGAATAAGATTAAGCGGTGTAA
GACCGATATGTCCGTGGGCTTAGAATGGGACAATCCCGCCCGGCCCGAAT
GCACCAATTTATTGAACATTTATCTGGCGGTGACCGAGAAGGAGGGGAAG
ACAAAGGAAAGTATATTAGAGGAGGTAGAGGGAATGAACTGGGGTGCGTT
TAAGCCCTTGTTGGCGGACGCAGTGGTGGCCCATTTGGAGCCGATCCAGA
GGCGGTATAGGGAAGTGATGGAGGATCCGGAGCACATCGAGGGAATATTG
ACGAGGGGGGCGGCAGATGCGGACGCCATTGCGAGCCAGACGCTCCAATG
GGCCAAGGATGCAATGGGATTTTATTCCCTTGGGCGGAAGTAG

protein sequence of jgi.p|Nanoce1779_2|551303

>mRNA_544-protein ID=mRNA_544-protein|Name=jgi.p|Nanoce1779_2|551303|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MPKAALSFLLFATVMVSSLLMATVAGVARRPAAGFASLGSCFSRAVPTIA
FASFSTLSSNGRIRGNWLRPFSGRSRGFATMNSGSSSSSSAIEGGERKKR
VLSGVQPTGSLHLGNYLGAIRQWVKNQDEYESLFCVVDLHAITAPHDPKR
LRQETIEAAALYLAAGIDPSKSTVFVQSHVLAHTELTWLLNCVTPMNWLE
RMIQFKEKAVKQGENVGVGLFDYPVLMAADILLYQAELVPVGEDQRQHLE
LTRDIARRFNDQFCNKKAKRRKVFRDPEALIVKEGARVMSLLDGTSKMSK
SAENDGSRINLLDSPETIRNKIKRCKTDMSVGLEWDNPARPECTNLLNIY
LAVTEKEGKTKESILEEVEGMNWGAFKPLLADAVVAHLEPIQRRYREVME
DPEHIEGILTRGAADADAIASQTLQWAKDAMGFYSLGRK*

mRNA from alignment at scaffold_3:1315604..1317398-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_544 ID=mRNA_544|Name=jgi.p|Nanoce1779_2|551303|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp|location=Sequence derived from alignment at scaffold_3:1315604..1317398- (Nannochloropsis oceanica)
CAGGACCGCGCCCCCACGACGACCAATTCCTACGCGCGTGCCCCCACAGC
CCGCAGCCTATCGACGCCTTCGAATGCCCAAAGCTGCCTTGAGTTTCCTC
CTTTTTGCGACCGTAATGGTTAGCAGCCTCCTGATGGCCACCGTAGCAGG
CGTGGCGCGACGGCCGGCGGCCGGCTTTGCCAGCCTTGGCTCGTGCTTCA
GCCGTGCTGTCCCCACGATCGCATTTGCTTCCTTCAGTACGCTCAGCAGC
AATGGTAGAATAAGAGGAAACTGGTTAAGACCCTTTTCCGGCAGGTCTCG
CGGCTTTGCCACCATGAATTCAGGCAGCAGCAGCAGCTCGAGCGCCATAG
AGGGAGGAGAACGGAAGAAGCGTGTGCTGTCAGGCGTGCAGCCCACGGGT
TCTTTACACCTGGGCAATTATCTAGGGGCCATCCGCCAGTGGGTCAAGAA
CCAGGACGAGTACGAATCCCTCTTTTGCGTTGTGGACTTGCATGCCATCA
CGGTACGTTTGGTGGTCAGGAGGTTAAGGTCGGTGAGCAAAAACGAAAAC
TGGATGGGTCAGTGTCTCAATCTCTTTCAGTACCAAATCTGAGTCTTTCC
TTCCCTCGCTTATTCCCTTCGTGCCCTAGGCCCCACACGACCCCAAGCGC
CTCCGGCAAGAGACCATCGAAGCCGCTGCCCTGTACTTGGCCGCTGGAAT
CGATCCTTCCAAAAGCACTGTCTTTGTACAGTCCCACGTCCTGGCCCACA
CGGAACTCACCTGGCTTCTTAACTGCGTGACGCCCATGAACTGGTTGGAG
CGGATGATTCAATTCAAAGAGAAGGCGGTCAAGCAAGGGGAAAACGTGGG
GGTGGGTCTTTTCGACTACCCCGTATTGATGGCTGCGGATATTTTGCTGT
ACCAGGCGGAGCTTGTGCCGGTGGGAGAGGATCAGCGGCAGCATTTGGAG
TTGACACGAGATATCGCTCGGCGCTTCAACGACCAGTTTTGTAATAAGAA
GGCCAAGAGGAGGAAGGTGAGGGCGTGTGACCATGACTGTATCCGTTAGT
GTTAGTGTGTGTGTGAGAGAGAGAGAGAGGGTGTGTGTGTGTGTAACCCT
TTGATTGGGAGTGGGGAGTTGTGGATGGAGTTTAGAATGCATGCCATTCC
TCCGATAATGTTTTGATACTATTAAGAAGGGAATGAATGTCCTGTCCTTT
GTCCACATATTTTCTCTTCCTCCCCTCTTCCTCCCCTCCTCCTTCCCTCC
CTCCTTCCATTCCTTCCTTTCGTCTCTTCTTCCCCCCATAGGTGTTTCGT
GACCCTGAAGCACTCATCGTAAAGGAAGGCGCTCGCGTAATGTCCCTCCT
AGATGGGACCAGCAAAATGAGCAAGTCGGCCGAAAACGACGGGAGTCGGA
TCAACCTCCTCGATAGCCCCGAGACGATTCGGAATAAGATTAAGCGGTGT
AAGACCGATATGTCCGTGGGCTTAGAATGGGACAATCCCGCCCGGCCCGA
ATGCACCAATTTATTGAACATTTATCTGGCGGTGACCGAGAAGGAGGGGA
AGACAAAGGAAAGTATATTAGAGGAGGTAGAGGGAATGAACTGGGGTGCG
TTTAAGCCCTTGTTGGCGGACGCAGTGGTGGCCCATTTGGAGCCGATCCA
GAGGCGGTATAGGGAAGTGATGGAGGATCCGGAGCACATCGAGGGAATAT
TGACGAGGGGGGCGGCAGATGCGGACGCCATTGCGAGCCAGACGCTCCAA
TGGGCCAAGGATGCAATGGGATTTTATTCCCTTGGGCGGAAGTAG

Coding sequence (CDS) from alignment at scaffold_3:1315604..1317398-

>mRNA_544 ID=mRNA_544|Name=jgi.p|Nanoce1779_2|551303|organism=Nannochloropsis oceanica|type=CDS|length=3960bp|location=Sequence derived from alignment at scaffold_3:1315604..1317398- (Nannochloropsis oceanica)
GTGTTTCGTGACCCTGAAGCACTCATCGTAAAGGAAGGCGCTCGCGTAAT
GTCCCTCCTAGATGGGACCAGCAAAATGAGCAAGTCGGCCGAAAACGACG
GGAGTCGGATCAACCTCCTCGATAGCCCCGAGACGATTCGGAATAAGATT
AAGCGGTGTAAGACCGATATGTCCGTGGGCTTAGAATGGGACAATCCCGC
CCGGCCCGAATGCACCAATTTATTGAACATTTATCTGGCGGTGACCGAGA
AGGAGGGGAAGACAAAGGAAAGTATATTAGAGGAGGTAGAGGGAATGAAC
TGGGGTGCGTTTAAGCCCTTGTTGGCGGACGCAGTGGTGGCCCATTTGGA
GCCGATCCAGAGGCGGTATAGGGAAGTGATGGAGGATCCGGAGCACATCG
AGGGAATATTGACGAGGGGGGCGGCAGATGCGGACGCCATTGCGAGCCAG
ACGCTCCAATGGGCCAAGGATGCAATGGGATTTTATTCCCTTGGGCGGAA
GTAGGCCCCACACGACCCCAAGCGCCTCCGGCAAGAGACCATCGAAGCCG
CTGCCCTGTACTTGGCCGCTGGAATCGATCCTTCCAAAAGCACTGTCTTT
GTACAGTCCCACGTCCTGGCCCACACGGAACTCACCTGGCTTCTTAACTG
CGTGACGCCCATGAACTGGTTGGAGCGGATGATTCAATTCAAAGAGAAGG
CGGTCAAGCAAGGGGAAAACGTGGGGGTGGGTCTTTTCGACTACCCCGTA
TTGATGGCTGCGGATATTTTGCTGTACCAGGCGGAGCTTGTGCCGGTGGG
AGAGGATCAGCGGCAGCATTTGGAGTTGACACGAGATATCGCTCGGCGCT
TCAACGACCAGTTTTGTAATAAGAAGGCCAAGAGGAGGAAGATGCCCAAA
GCTGCCTTGAGTTTCCTCCTTTTTGCGACCGTAATGGTTAGCAGCCTCCT
GATGGCCACCGTAGCAGGCGTGGCGCGACGGCCGGCGGCCGGCTTTGCCA
GCCTTGGCTCGTGCTTCAGCCGTGCTGTCCCCACGATCGCATTTGCTTCC
TTCAGTACGCTCAGCAGCAATGGTAGAATAAGAGGAAACTGGTTAAGACC
CTTTTCCGGCAGGTCTCGCGGCTTTGCCACCATGAATTCAGGCAGCAGCA
GCAGCTCGAGCGCCATAGAGGGAGGAGAACGGAAGAAGCGTGTGCTGTCA
GGCGTGCAGCCCACGGGTTCTTTACACCTGGGCAATTATCTAGGGGCCAT
CCGCCAGTGGGTCAAGAACCAGGACGAGTACGAATCCCTCTTTTGCGTTG
TGGACTTGCATGCCATCACGGTGTTTCGTGACCCTGAAGCACTCATCGTA
AAGGAAGGCGCTCGCGTAATGTCCCTCCTAGATGGGACCAGCAAAATGAG
CAAGTCGGCCGAAAACGACGGGAGTCGGATCAACCTCCTCGATAGCCCCG
AGACGATTCGGAATAAGATTAAGCGGTGTAAGACCGATATGTCCGTGGGC
TTAGAATGGGACAATCCCGCCCGGCCCGAATGCACCAATTTATTGAACAT
TTATCTGGCGGTGACCGAGAAGGAGGGGAAGACAAAGGAAAGTATATTAG
AGGAGGTAGAGGGAATGAACTGGGGTGCGTTTAAGCCCTTGTTGGCGGAC
GCAGTGGTGGCCCATTTGGAGCCGATCCAGAGGCGGTATAGGGAAGTGAT
GGAGGATCCGGAGCACATCGAGGGAATATTGACGAGGGGGGCGGCAGATG
CGGACGCCATTGCGAGCCAGACGCTCCAATGGGCCAAGGATGCAATGGGA
TTTTATTCCCTTGGGCGGAAGTAGGCCCCACACGACCCCAAGCGCCTCCG
GCAAGAGACCATCGAAGCCGCTGCCCTGTACTTGGCCGCTGGAATCGATC
CTTCCAAAAGCACTGTCTTTGTACAGTCCCACGTCCTGGCCCACACGGAA
CTCACCTGGCTTCTTAACTGCGTGACGCCCATGAACTGGTTGGAGCGGAT
GATTCAATTCAAAGAGAAGGCGGTCAAGCAAGGGGAAAACGTGGGGGTGG
GTCTTTTCGACTACCCCGTATTGATGGCTGCGGATATTTTGCTGTACCAG
GCGGAGCTTGTGCCGGTGGGAGAGGATCAGCGGCAGCATTTGGAGTTGAC
ACGAGATATCGCTCGGCGCTTCAACGACCAGTTTTGTAATAAGAAGGCCA
AGAGGAGGAAGATGCCCAAAGCTGCCTTGAGTTTCCTCCTTTTTGCGACC
GTAATGGTTAGCAGCCTCCTGATGGCCACCGTAGCAGGCGTGGCGCGACG
GCCGGCGGCCGGCTTTGCCAGCCTTGGCTCGTGCTTCAGCCGTGCTGTCC
CCACGATCGCATTTGCTTCCTTCAGTACGCTCAGCAGCAATGGTAGAATA
AGAGGAAACTGGTTAAGACCCTTTTCCGGCAGGTCTCGCGGCTTTGCCAC
CATGAATTCAGGCAGCAGCAGCAGCTCGAGCGCCATAGAGGGAGGAGAAC
GGAAGAAGCGTGTGCTGTCAGGCGTGCAGCCCACGGGTTCTTTACACCTG
GGCAATTATCTAGGGGCCATCCGCCAGTGGGTCAAGAACCAGGACGAGTA
CGAATCCCTCTTTTGCGTTGTGGACTTGCATGCCATCACGGTGTTTCGTG
ACCCTGAAGCACTCATCGTAAAGGAAGGCGCTCGCGTAATGTCCCTCCTA
GATGGGACCAGCAAAATGAGCAAGTCGGCCGAAAACGACGGGAGTCGGAT
CAACCTCCTCGATAGCCCCGAGACGATTCGGAATAAGATTAAGCGGTGTA
AGACCGATATGTCCGTGGGCTTAGAATGGGACAATCCCGCCCGGCCCGAA
TGCACCAATTTATTGAACATTTATCTGGCGGTGACCGAGAAGGAGGGGAA
GACAAAGGAAAGTATATTAGAGGAGGTAGAGGGAATGAACTGGGGTGCGT
TTAAGCCCTTGTTGGCGGACGCAGTGGTGGCCCATTTGGAGCCGATCCAG
AGGCGGTATAGGGAAGTGATGGAGGATCCGGAGCACATCGAGGGAATATT
GACGAGGGGGGCGGCAGATGCGGACGCCATTGCGAGCCAGACGCTCCAAT
GGGCCAAGGATGCAATGGGATTTTATTCCCTTGGGCGGAAGTAGGCCCCA
CACGACCCCAAGCGCCTCCGGCAAGAGACCATCGAAGCCGCTGCCCTGTA
CTTGGCCGCTGGAATCGATCCTTCCAAAAGCACTGTCTTTGTACAGTCCC
ACGTCCTGGCCCACACGGAACTCACCTGGCTTCTTAACTGCGTGACGCCC
ATGAACTGGTTGGAGCGGATGATTCAATTCAAAGAGAAGGCGGTCAAGCA
AGGGGAAAACGTGGGGGTGGGTCTTTTCGACTACCCCGTATTGATGGCTG
CGGATATTTTGCTGTACCAGGCGGAGCTTGTGCCGGTGGGAGAGGATCAG
CGGCAGCATTTGGAGTTGACACGAGATATCGCTCGGCGCTTCAACGACCA
GTTTTGTAATAAGAAGGCCAAGAGGAGGAAGATGCCCAAAGCTGCCTTGA
GTTTCCTCCTTTTTGCGACCGTAATGGTTAGCAGCCTCCTGATGGCCACC
GTAGCAGGCGTGGCGCGACGGCCGGCGGCCGGCTTTGCCAGCCTTGGCTC
GTGCTTCAGCCGTGCTGTCCCCACGATCGCATTTGCTTCCTTCAGTACGC
TCAGCAGCAATGGTAGAATAAGAGGAAACTGGTTAAGACCCTTTTCCGGC
AGGTCTCGCGGCTTTGCCACCATGAATTCAGGCAGCAGCAGCAGCTCGAG
CGCCATAGAGGGAGGAGAACGGAAGAAGCGTGTGCTGTCAGGCGTGCAGC
CCACGGGTTCTTTACACCTGGGCAATTATCTAGGGGCCATCCGCCAGTGG
GTCAAGAACCAGGACGAGTACGAATCCCTCTTTTGCGTTGTGGACTTGCA
TGCCATCACG

Synonyms

Publications