jgi.p|Nanoce1779_2|592514, mRNA_5439 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592514
Unique NamemRNA_5439
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length576
Alignment locationscaffold_13:425997..426572 +

Link to JBrowse

Properties
Property NameValue
TranscriptId592600
TrackFilteredModels2
ProteinId592514
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:425997..426572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592514gene_5439Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592514mRNA_5439-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5439CDS_5439Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5439 ID=mRNA_5439|Name=jgi.p|Nanoce1779_2|592514|organism=Nannochloropsis oceanica|type=mRNA|length=576bp
ACAGACAGGCGACATGGCGTTACAGCAGCTAGCGGTGCAGTTGCGGCGGC
AGAGTGGGGCGTGGGCCCGTGATATGCGTGTCATTGTCCCGGCCACCCTC
TCGCTCTTGCGGCCGCCAGTCGTCATATCAGAAAACTTGCGGGTGCCAAC
TCAACAAACAACGTACAACTTGGGTTTGGCGTGGGAAGGGATGCCTCCCA
TCGAGAAGGAGCAAGAGGATGAGATGCAGCTAGAAGAGCGGAGAGAGGAG
GAGGCGGGGTCGGAGGGGTTCTGGGATGGCTTGCTTCGCATGGCGGTGCC
CAAGAAGAAGGTCTCCCACCGACGAAGGCGCCGCAAGCTGGTGCATTATG
ACTGTGAGAATATTGTCCACGCCTACCCGTGTCCCGCGTGTGGCAAGCCC
AAGCTCCGTCATCGATTGTGTGACGATTACGAAAAGTGCGCTGCTCAAAT
GCCGGCGAAGTACCAGAGACCCGGCGAAGCCTCGGCGGCTGCGGCCGCAG
GAGGAGAGGAGAATCATGCGTAGAGTATGGCATCAAAGCAAGAAAAGCAA
CGTGCAGATATTTTACCGAGTTGAGA
back to top

protein sequence of jgi.p|Nanoce1779_2|592514

>mRNA_5439-protein ID=mRNA_5439-protein|Name=jgi.p|Nanoce1779_2|592514|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MALQQLAVQLRRQSGAWARDMRVIVPATLSLLRPPVVISENLRVPTQQTT
YNLGLAWEGMPPIEKEQEDEMQLEERREEEAGSEGFWDGLLRMAVPKKKV
SHRRRRRKLVHYDCENIVHAYPCPACGKPKLRHRLCDDYEKCAAQMPAKY
QRPGEASAAAAAGGEENHA*
back to top

mRNA from alignment at scaffold_13:425997..426572+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5439 ID=mRNA_5439|Name=jgi.p|Nanoce1779_2|592514|organism=Nannochloropsis oceanica|type=mRNA|length=576bp|location=Sequence derived from alignment at scaffold_13:425997..426572+ (Nannochloropsis oceanica)
ACAGACAGGCGACATGGCGTTACAGCAGCTAGCGGTGCAGTTGCGGCGGC
AGAGTGGGGCGTGGGCCCGTGATATGCGTGTCATTGTCCCGGCCACCCTC
TCGCTCTTGCGGCCGCCAGTCGTCATATCAGAAAACTTGCGGGTGCCAAC
TCAACAAACAACGTACAACTTGGGTTTGGCGTGGGAAGGGATGCCTCCCA
TCGAGAAGGAGCAAGAGGATGAGATGCAGCTAGAAGAGCGGAGAGAGGAG
GAGGCGGGGTCGGAGGGGTTCTGGGATGGCTTGCTTCGCATGGCGGTGCC
CAAGAAGAAGGTCTCCCACCGACGAAGGCGCCGCAAGCTGGTGCATTATG
ACTGTGAGAATATTGTCCACGCCTACCCGTGTCCCGCGTGTGGCAAGCCC
AAGCTCCGTCATCGATTGTGTGACGATTACGAAAAGTGCGCTGCTCAAAT
GCCGGCGAAGTACCAGAGACCCGGCGAAGCCTCGGCGGCTGCGGCCGCAG
GAGGAGAGGAGAATCATGCGTAGAGTATGGCATCAAAGCAAGAAAAGCAA
CGTGCAGATATTTTACCGAGTTGAGA
back to top

Coding sequence (CDS) from alignment at scaffold_13:425997..426572+

>mRNA_5439 ID=mRNA_5439|Name=jgi.p|Nanoce1779_2|592514|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_13:425997..426572+ (Nannochloropsis oceanica)
ATGGCGTTACAGCAGCTAGCGGTGCAGTTGCGGCGGCAGAGTGGGGCGTG
GGCCCGTGATATGCGTGTCATTGTCCCGGCCACCCTCTCGCTCTTGCGGC
CGCCAGTCGTCATATCAGAAAACTTGCGGGTGCCAACTCAACAAACAACG
TACAACTTGGGTTTGGCGTGGGAAGGGATGCCTCCCATCGAGAAGGAGCA
AGAGGATGAGATGCAGCTAGAAGAGCGGAGAGAGGAGGAGGCGGGGTCGG
AGGGGTTCTGGGATGGCTTGCTTCGCATGGCGGTGCCCAAGAAGAAGGTC
TCCCACCGACGAAGGCGCCGCAAGCTGGTGCATTATGACTGTGAGAATAT
TGTCCACGCCTACCCGTGTCCCGCGTGTGGCAAGCCCAAGCTCCGTCATC
GATTGTGTGACGATTACGAAAAGTGCGCTGCTCAAATGCCGGCGAAGTAC
CAGAGACCCGGCGAAGCCTCGGCGGCTGCGGCCGCAGGAGGAGAGGAGAA
TCATGCGTAG
back to top
Synonyms
Publications