Properties
| Property Name | Value |
|---|
| TranscriptId | 592594 |
| Track | FilteredModels2 |
| ProteinId | 592508 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:421123..423591 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5436 ID=mRNA_5436|Name=jgi.p|Nanoce1779_2|592508|organism=Nannochloropsis oceanica|type=mRNA|length=1909bp
ACAGCCTGCTCAAGATGCTGCACCAGGGCCTTCGGCGTGCGGCACATGCC
GCCCTTATGAACCAGTCTGCCAGGCCTGTCATGGTCGCGCGTAATTACAC
GTCCACGGCATTCCTTAGCCGACCCTTTTCTAGCCAGGGGGCGAACTTAC
AAAAGGTCTTCCAAAAGGGCAAAAAGGGAAACAATCCCAACACCACTACT
ACGACTAACGGCGGCACCCTCTCCGTGAACGAGGCCAGCCTGGACGACCT
GGAGACAACAACGCCCTCTGCGTCCACAACCACGGGCGGGGACATCAAGG
TGGACGCTACGAGCGAATCTGCCTTCGCCTCCTCTCCCAATGCGTCCTCC
CTCTTCTCCTCCCCCTCTTCCACCACCACTGCGTCCGAATCCCCTTACCT
GGCCGGGTTAACCCCCGGCACCCCAGCCGCAGCATTCATGCGGCCTCAAC
CGGCTGCTCCGACGATGCAGCACACGCACTTGCAGACGCATCTTTGCACG
GAGTTTGCCCCTAAAATTTGTGTGATTGGCGTGGGCGGCGCAGGGGGCAA
TGCGGTAAACAATATGATCATGCGCGGGTTGTCTGGGGTGGAGTTTCTGG
TCTGCAACACTGATGCGCAGCATCTGGCGACGACTTTAACAGATAATCGA
TTGCAAATCGGACGTGACATCACGCAAGGGTTGGGGTGTGGCGCGAACCC
GGATGTGGGGAAGGTGGCGGGCGAGGAGAGCAAGCAGGAGTTGCTCGAAA
GGATAGGCGACTCCCATATGGTTTTCATAACTGCTGGAATGGGGGGAGGG
ACGGGGACAGGAGCAGCGCCAATCATTGCGAAGACGTGCCATGAGGCAGG
GATTTTAACGGTGGCCGTTGTTACCAGACCGTTTCGCTTTGAAGGCACCC
ATCGAATGCGGCTTGCGGAGGAGGGTTTGAGGCGACTGCAGGACTCGGTG
GACACCTTGTTGGTGATTCCGAACCAGAATTTGTTCAAGATGGTCGACCC
CTCCACTACTCTTCTGGATGCTTTCCGCCTGGCGGACGACGTGTTGCTCG
CGGGGGTGAAAAGTGTGACAGACCTGATGACCATGCCGGGGTTGATTAAT
CTCGACTTTGCCGACGTCCAAAGCGTTATGTCCGGGATGGGAAACGCCAT
CATGGGCACAGGCCAAGCTTCTGGGGAGGACAGAGCCTTGCGCGCGGCGG
AAGATGCGTTGCAGAACCCGCTGTTGGGCCAGGTGTCGATTAAGTCGGCG
AAAGGCATGTTGGTTAATATTACGGGGGGGCCCGACATGACCTTGTTCGA
GGTTGATAAGGCGGCGCAGCGTGTGACGGAGGAAGTGGAGGACGAGCATG
CAAACATAATTTTTGGGAGTTCGTATGAAGCGAGTTTGGCTGGGACGGGA
GAGAATGGGGAGGGGGGATCTGTTCGCGTTTCGATCGTGGCGACGGGCAT
TGAGGACATGGAAAGCGTCAAGGAGACGACAACCGCCTTGGGGAGAGGGT
TAAAGTAAGCAGCAAAAAAGATGTTACAATGAAAGTTGAAGATGGCGAAG
AGAGAAGTTGTGTATTATGAAGGGGTCGGATGGAGGGATTAAAAGGAAGG
AGGCAGGGAAGAGGCAGCATTGATTTTCTGGGGGTGCTGGGTATGGGGGA
ATGGCGACTAAATTAAATACGGCCGGCCTTTTTTTCACTCCGACTCGAAA
ACCCAACTAGGCTTAAGGCGCAAAGAGAGAAAGAAAGAAGGAAAAGAAGA
AAGATAGACGTACACAGAGACCAACCAACGTAACTGTGTGTATGTACGTG
CAGTGCTTGGCCCATATTGAGATGCAGGTAGGCAACGCGCTTAGCGGGAA
GGTCGCGTCTTGAGCCACCCTTCTTCTCCTCGTGGCCCCCCCCCCCCCCT
TCCCCCCCC back to topprotein sequence of jgi.p|Nanoce1779_2|592508 >mRNA_5436-protein ID=mRNA_5436-protein|Name=jgi.p|Nanoce1779_2|592508|organism=Nannochloropsis oceanica|type=polypeptide|length=498bp
MLHQGLRRAAHAALMNQSARPVMVARNYTSTAFLSRPFSSQGANLQKVFQ
KGKKGNNPNTTTTTNGGTLSVNEASLDDLETTTPSASTTTGGDIKVDATS
ESAFASSPNASSLFSSPSSTTTASESPYLAGLTPGTPAAAFMRPQPAAPT
MQHTHLQTHLCTEFAPKICVIGVGGAGGNAVNNMIMRGLSGVEFLVCNTD
AQHLATTLTDNRLQIGRDITQGLGCGANPDVGKVAGEESKQELLERIGDS
HMVFITAGMGGGTGTGAAPIIAKTCHEAGILTVAVVTRPFRFEGTHRMRL
AEEGLRRLQDSVDTLLVIPNQNLFKMVDPSTTLLDAFRLADDVLLAGVKS
VTDLMTMPGLINLDFADVQSVMSGMGNAIMGTGQASGEDRALRAAEDALQ
NPLLGQVSIKSAKGMLVNITGGPDMTLFEVDKAAQRVTEEVEDEHANIIF
GSSYEASLAGTGENGEGGSVRVSIVATGIEDMESVKETTTALGRGLK* back to topmRNA from alignment at scaffold_13:421123..423591+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5436 ID=mRNA_5436|Name=jgi.p|Nanoce1779_2|592508|organism=Nannochloropsis oceanica|type=mRNA|length=2469bp|location=Sequence derived from alignment at scaffold_13:421123..423591+ (Nannochloropsis oceanica)
ACAGCCTGCTCAAGATGCTGCACCAGGGCCTTCGGCGTGCGGCACATGCC
GCCCTTATGAACCAGTCTGCCAGGCCTGTCATGGTCGCGCGTAATTACAC
GTCCACGGCATTCCTTAGCCGACCCTTTTCTAGCCAGGGGGCGAACTTAC
AAAAGGTATTTGAATAGGGAAGGGATGGAGGGAAGAATGTCTTGTCTGAG
GACAGATTGTGAGACAAAGCATCAAATCCTTTCTTTTTCTTGACGAAAGG
TATGCTTGATGATGGCTCTCCTGGATCCAGCGGCTATGAAGTGAGAAACG
GAGGGAGGAACGGAAGGAAGGAAAGGATGAGACTGGAGGGCATGTAATAA
GTGTGTTGCACACTGATGGTGTGACCTTGCAAAAATCTGGAATTCGGGTG
CCTTTACTTCCCACTTCTCAAATTTCTCCTTCCTTCCCTTTCCAGGTCTT
CCAAAAGGGCAAAAAGGGAAACAATCCCAACACCACTACTACGACTAACG
GCGGCACCCTCTCCGTGAACGAGGCCAGCCTGGACGACCTGGAGACAACA
ACGCCCTCTGCGTCCACAACCACGGGCGGGGACATCAAGGTGGACGCTAC
GAGCGAATCTGCCTTCGCCTCCTCTCCCAATGCGTCCTCCCTCTTCTCCT
CCCCCTCTTCCACCACCACTGCGTCCGAATCCCCTTACCTGGCCGGGTTA
ACCCCCGGCACCCCAGCCGCAGCATTCATGCGGCCTCAACCGGCTGCTCC
GACGATGCAGCACACGCACTTGCAGACGCATCTTTGCACGGAGTTTGCCC
CTAAAATTTGTGTGATTGGCGTGGGCGGCGCAGGGGGCAATGCGGTAAAC
AATATGATCATGCGCGGGTTGTCTGGGGTGGAGTTTCTGGTCTGCAACAC
TGATGCGCAGCATCTGGCGACGACTTTAACAGATAATCGATTGCAAATCG
GACGTGACATCACGCAAGGGTTGGGGTGTGGCGCGAACCCGGATGTGGGG
AAGGTGGCGGGCGAGGAGAGCAAGCAGGAGTTGCTCGAAAGGATAGGCGA
CTCCCATATGGTTTTCATAACTGCTGGAATGGGGGGAGGGACGGGGACAG
GAGCAGCGCCAATCATTGCGAAGACGTGCCATGAGGCAGGGATTTTAACG
GTGGCCGTTGTTACCAGACCGTTTCGCTTTGAAGGCACCCATCGAATGCG
GCTTGCGGAGGAGGGTTTGAGGCGACTGCAGGACTCGGTGGACACCTTGT
TGGTGATTCCGAACCAGAATTTGTTCAAGATGGTCGACCCCTCCACTACT
CTTCTGGATGCTTTCCGCCTGGCGGACGACGTGTTGCTCGCGGGGGTGAA
AAGTGTGACAGGTAGGCCCTCCCTTCTTCGCTCCCTTATTCACTCTCTCC
CTCTCCCCCCATACCTTCGTCCTTAGATAATATTTAGACAGTTTTCATTG
ATCAACTGTTGCTTTCCATCTTTATCGACTCCCTAGACCTGATGACCATG
CCGGGGTTGATTAATCTCGACTTTGCCGACGTCCAAAGCGTTATGTCCGG
GATGGGAAACGCCATCATGGGCACAGGCCAAGCTTCTGGGGAGGACAGAG
CCTTGCGCGCGGCGGAAGATGCGTTGCAGAACCCGCTGTTGGGCCAGGTG
TCGATTAAGTCGGCGAAAGGCATGTTGGTTAATATTACGGGGGGGCCCGA
CATGACCTTGTTCGAGGTTGATAAGGCGGCGCAGCGTGTGACGGAGGAAG
TGGAGGACGAGCATGCAAACATAATTTTTGGGAGTTCGTATGAAGCGAGT
TTGGCTGGGACGGGAGAGAATGGGGAGGGGGGATCTGTTCGCGTTTCGAT
CGTGGCGACGGGCATTGAGGACATGGAAAGCGTCAAGGAGACGACAACCG
CCTTGGGGAGAGGGTTAAAGTAAGCAGCAAAAAAGATGTTACAATGAAAG
TTGAAGATGGCGAAGAGAGAAGTTGTGTATTATGAAGGGGTCGGATGGAG
GGATTAAAAGGAAGGAGGCAGGGAAGAGGCAGCATTGATTTTCTGGGGGT
GCTGGGTATGGGGGAATGGCGACTAAATTAAATACGGCCGGCCTTTTTTT
CACTCCGACTCGAAAACCCAACTAGGCTTAAGGCGCAAAGAGAGAAAGAA
AGAAGGAAAAGAAGAAAGATAGACGTACACAGAGACCAACCAACGTAACT
GTGTGTATGTACGTGCAGTGCTTGGCCCATATTGAGATGCAGGTAAGCCT
GGGGTGCTTGGCGGGTGGCGCGAAGGGGCGCAGCCAGAAGGATTCTATCC
TCTGTGTCTGTGCGCCCACGACCACATACGATTTTGCACAGAGCCCATTC
ACGCCCATCGCAACAACTATGAACGTGTATTCCACAGGTAGGCAACGCGC
TTAGCGGGAAGGTCGCGTCTTGAGCCACCCTTCTTCTCCTCGTGGCCCCC
CCCCCCCCCTTCCCCCCCC back to topCoding sequence (CDS) from alignment at scaffold_13:421123..423591+ >mRNA_5436 ID=mRNA_5436|Name=jgi.p|Nanoce1779_2|592508|organism=Nannochloropsis oceanica|type=CDS|length=4482bp|location=Sequence derived from alignment at scaffold_13:421123..423591+ (Nannochloropsis oceanica)
ATGCTGCACCAGGGCCTTCGGCGTGCGGCACATGCCGCCCTTATGAACCA
GTCTGCCAGGCCTGTCATGGTCGCGCGTAATTACACGTCCACGGCATTCC
TTAGCCGACCCTTTTCTAGCCAGGGGGCGAACTTACAAAAGGTCTTCCAA
AAGGGCAAAAAGGGAAACAATCCCAACACCACTACTACGACTAACGGCGG
CACCCTCTCCGTGAACGAGGCCAGCCTGGACGACCTGGAGACAACAACGC
CCTCTGCGTCCACAACCACGGGCGGGGACATCAAGGTGGACGCTACGAGC
GAATCTGCCTTCGCCTCCTCTCCCAATGCGTCCTCCCTCTTCTCCTCCCC
CTCTTCCACCACCACTGCGTCCGAATCCCCTTACCTGGCCGGGTTAACCC
CCGGCACCCCAGCCGCAGCATTCATGCGGCCTCAACCGGCTGCTCCGACG
ATGCAGCACACGCACTTGCAGACGCATCTTTGCACGGAGTTTGCCCCTAA
AATTTGTGTGATTGGCGTGGGCGGCGCAGGGGGCAATGCGGTAAACAATA
TGATCATGCGCGGGTTGTCTGGGGTGGAGTTTCTGGTCTGCAACACTGAT
GCGCAGCATCTGGCGACGACTTTAACAGATAATCGATTGCAAATCGGACG
TGACATCACGCAAGGGTTGGGGTGTGGCGCGAACCCGGATGTGGGGAAGG
TGGCGGGCGAGGAGAGCAAGCAGGAGTTGCTCGAAAGGATAGGCGACTCC
CATATGGTTTTCATAACTGCTGGAATGGGGGGAGGGACGGGGACAGGAGC
AGCGCCAATCATTGCGAAGACGTGCCATGAGGCAGGGATTTTAACGGTGG
CCGTTGTTACCAGACCGTTTCGCTTTGAAGGCACCCATCGAATGCGGCTT
GCGGAGGAGGGTTTGAGGCGACTGCAGGACTCGGTGGACACCTTGTTGGT
GATTCCGAACCAGAATTTGTTCAAGATGGTCGACCCCTCCACTACTCTTC
TGGATGCTTTCCGCCTGGCGGACGACGTGTTGCTCGCGGGGGTGAAAAGT
GTGACAGACCTGATGACCATGCCGGGGTTGATTAATCTCGACTTTGCCGA
CGTCCAAAGCGTTATGTCCGGGATGGGAAACGCCATCATGGGCACAGGCC
AAGCTTCTGGGGAGGACAGAGCCTTGCGCGCGGCGGAAGATGCGTTGCAG
AACCCGCTGTTGGGCCAGGTGTCGATTAAGTCGGCGAAAGGCATGTTGGT
TAATATTACGGGGGGGCCCGACATGACCTTGTTCGAGGTTGATAAGGCGG
CGCAGCGTGTGACGGAGGAAGTGGAGGACGAGCATGCAAACATAATTTTT
GGGAGTTCGTATGAAGCGAGTTTGGCTGGGACGGGAGAGAATGGGGAGGG
GGGATCTGTTCGCGTTTCGATCGTGGCGACGGGCATTGAGGACATGGAAA
GCGTCAAGGAGACGACAACCGCCTTGGGGAGAGGGTTAAAGTAAATGCTG
CACCAGGGCCTTCGGCGTGCGGCACATGCCGCCCTTATGAACCAGTCTGC
CAGGCCTGTCATGGTCGCGCGTAATTACACGTCCACGGCATTCCTTAGCC
GACCCTTTTCTAGCCAGGGGGCGAACTTACAAAAGGTCTTCCAAAAGGGC
AAAAAGGGAAACAATCCCAACACCACTACTACGACTAACGGCGGCACCCT
CTCCGTGAACGAGGCCAGCCTGGACGACCTGGAGACAACAACGCCCTCTG
CGTCCACAACCACGGGCGGGGACATCAAGGTGGACGCTACGAGCGAATCT
GCCTTCGCCTCCTCTCCCAATGCGTCCTCCCTCTTCTCCTCCCCCTCTTC
CACCACCACTGCGTCCGAATCCCCTTACCTGGCCGGGTTAACCCCCGGCA
CCCCAGCCGCAGCATTCATGCGGCCTCAACCGGCTGCTCCGACGATGCAG
CACACGCACTTGCAGACGCATCTTTGCACGGAGTTTGCCCCTAAAATTTG
TGTGATTGGCGTGGGCGGCGCAGGGGGCAATGCGGTAAACAATATGATCA
TGCGCGGGTTGTCTGGGGTGGAGTTTCTGGTCTGCAACACTGATGCGCAG
CATCTGGCGACGACTTTAACAGATAATCGATTGCAAATCGGACGTGACAT
CACGCAAGGGTTGGGGTGTGGCGCGAACCCGGATGTGGGGAAGGTGGCGG
GCGAGGAGAGCAAGCAGGAGTTGCTCGAAAGGATAGGCGACTCCCATATG
GTTTTCATAACTGCTGGAATGGGGGGAGGGACGGGGACAGGAGCAGCGCC
AATCATTGCGAAGACGTGCCATGAGGCAGGGATTTTAACGGTGGCCGTTG
TTACCAGACCGTTTCGCTTTGAAGGCACCCATCGAATGCGGCTTGCGGAG
GAGGGTTTGAGGCGACTGCAGGACTCGGTGGACACCTTGTTGGTGATTCC
GAACCAGAATTTGTTCAAGATGGTCGACCCCTCCACTACTCTTCTGGATG
CTTTCCGCCTGGCGGACGACGTGTTGCTCGCGGGGGTGAAAAGTGTGACA
GACCTGATGACCATGCCGGGGTTGATTAATCTCGACTTTGCCGACGTCCA
AAGCGTTATGTCCGGGATGGGAAACGCCATCATGGGCACAGGCCAAGCTT
CTGGGGAGGACAGAGCCTTGCGCGCGGCGGAAGATGCGTTGCAGAACCCG
CTGTTGGGCCAGGTGTCGATTAAGTCGGCGAAAGGCATGTTGGTTAATAT
TACGGGGGGGCCCGACATGACCTTGTTCGAGGTTGATAAGGCGGCGCAGC
GTGTGACGGAGGAAGTGGAGGACGAGCATGCAAACATAATTTTTGGGAGT
TCGTATGAAGCGAGTTTGGCTGGGACGGGAGAGAATGGGGAGGGGGGATC
TGTTCGCGTTTCGATCGTGGCGACGGGCATTGAGGACATGGAAAGCGTCA
AGGAGACGACAACCGCCTTGGGGAGAGGGTTAAAGTAAATGCTGCACCAG
GGCCTTCGGCGTGCGGCACATGCCGCCCTTATGAACCAGTCTGCCAGGCC
TGTCATGGTCGCGCGTAATTACACGTCCACGGCATTCCTTAGCCGACCCT
TTTCTAGCCAGGGGGCGAACTTACAAAAGGTCTTCCAAAAGGGCAAAAAG
GGAAACAATCCCAACACCACTACTACGACTAACGGCGGCACCCTCTCCGT
GAACGAGGCCAGCCTGGACGACCTGGAGACAACAACGCCCTCTGCGTCCA
CAACCACGGGCGGGGACATCAAGGTGGACGCTACGAGCGAATCTGCCTTC
GCCTCCTCTCCCAATGCGTCCTCCCTCTTCTCCTCCCCCTCTTCCACCAC
CACTGCGTCCGAATCCCCTTACCTGGCCGGGTTAACCCCCGGCACCCCAG
CCGCAGCATTCATGCGGCCTCAACCGGCTGCTCCGACGATGCAGCACACG
CACTTGCAGACGCATCTTTGCACGGAGTTTGCCCCTAAAATTTGTGTGAT
TGGCGTGGGCGGCGCAGGGGGCAATGCGGTAAACAATATGATCATGCGCG
GGTTGTCTGGGGTGGAGTTTCTGGTCTGCAACACTGATGCGCAGCATCTG
GCGACGACTTTAACAGATAATCGATTGCAAATCGGACGTGACATCACGCA
AGGGTTGGGGTGTGGCGCGAACCCGGATGTGGGGAAGGTGGCGGGCGAGG
AGAGCAAGCAGGAGTTGCTCGAAAGGATAGGCGACTCCCATATGGTTTTC
ATAACTGCTGGAATGGGGGGAGGGACGGGGACAGGAGCAGCGCCAATCAT
TGCGAAGACGTGCCATGAGGCAGGGATTTTAACGGTGGCCGTTGTTACCA
GACCGTTTCGCTTTGAAGGCACCCATCGAATGCGGCTTGCGGAGGAGGGT
TTGAGGCGACTGCAGGACTCGGTGGACACCTTGTTGGTGATTCCGAACCA
GAATTTGTTCAAGATGGTCGACCCCTCCACTACTCTTCTGGATGCTTTCC
GCCTGGCGGACGACGTGTTGCTCGCGGGGGTGAAAAGTGTGACAGACCTG
ATGACCATGCCGGGGTTGATTAATCTCGACTTTGCCGACGTCCAAAGCGT
TATGTCCGGGATGGGAAACGCCATCATGGGCACAGGCCAAGCTTCTGGGG
AGGACAGAGCCTTGCGCGCGGCGGAAGATGCGTTGCAGAACCCGCTGTTG
GGCCAGGTGTCGATTAAGTCGGCGAAAGGCATGTTGGTTAATATTACGGG
GGGGCCCGACATGACCTTGTTCGAGGTTGATAAGGCGGCGCAGCGTGTGA
CGGAGGAAGTGGAGGACGAGCATGCAAACATAATTTTTGGGAGTTCGTAT
GAAGCGAGTTTGGCTGGGACGGGAGAGAATGGGGAGGGGGGATCTGTTCG
CGTTTCGATCGTGGCGACGGGCATTGAGGACATGGAAAGCGTCAAGGAGA
CGACAACCGCCTTGGGGAGAGGGTTAAAGTAA back to top
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