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Properties
| Property Name | Value |
|---|
| TranscriptId | 592592 |
| Track | FilteredModels2 |
| ProteinId | 592506 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:419304..420635 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5435 ID=mRNA_5435|Name=jgi.p|Nanoce1779_2|592506|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp
ACAGGCCATGTCAGCACCAGCACCAGCTCATCTATGATGCCCAAGCCCAA
GCCTTCCCCTGAGCCCCGTATCCTTCGGGGCCACGAGGCAAGCGTGCAAG
CAGTCTCCTTCCTGGGCAGCAGCGGTAGCAGCAATGATGGGGAGCCTCCC
CTCCTCGTGACGGGCGATGCCGACGGCCATGTAAAGCTCTGGGACCTTGG
CGCCTGTCGTCCGCGAATAAGCTGGATGCCGCAGCAGTATTCTGCCCCCT
CCTTGTGTATGGCGCCGCCGACCCTGTCATCGATGAAGGGTGTCTTGAGC
TTGCATGCGCTCGAACAAGGCCGGCAATTGTTGACGCAGCTTCGCGGGGG
AACCATTTCGTTGTGGGACATGGGCGAATATGGAGGGCAGCCCCGACCAG
TGCGTTCCTGGGCGACGGGTTCGTTTCATTTTTGTAAGGTCTCGGTGGGT
GGAAATGTCAGTGCTACAGCCAGTGCAACGCCACAGCAGCATCACCAGCA
GCGGTTATTGTTGGCGCCGACAGCCGAGTCGGAACAATTTCAATTGTGGG
ACATGCGGGATGGCACGCGTCCAGCGCATACATTTGCGCCTTCAGAGCCT
GAGAACAGGGGGCTGTGTATGTGTCTTCGCTTAGTGTTGCCCACCACTTC
TGTTGGGGAGGGAGATGGTGCTGGTGGTGGTGCTGCCGCTGGAGAGGGGT
TTGCGCTGGCGGTGTATGAAGATGGTTCTCTATGTGGATGGGATCTTAGA
CGTTGTTGTACCTCTTTTACGTCTTCTTCCTGCAGTAGCAGTAGTAGCCG
CAGTGGCAGTACTGCTGCGTTCTCTGTCAAGCTTACTGAGAAAGAAACGC
CCGTGGCTTTGGATATCGGGCCGTCGGGAAACCGAGGAATCTTAGGAGCA
GCAGGTTGTGAGCTCGTCCTTTTTGACCTGGAGCTGGCACAACACCGGTG
TACGAAAAATAAATCCCTCTCGCTGAAGCACCCAGGTGTAGGGGCAGTAG
TAGTGCGGAGTGATGAGAAGCTTTTCGCAACGGGAGGTTGGGACCATCGG
GTGCGTATTTTCCGGTGGCAAGATGGCGCACCTTTGGCAGTATTGAGAGG
ACATAGCGAAAGTGTGAACTCCTTGGCCTTTAGTTCGGATATGAGTACGC
TGGTCTCGGTGGGGAAGGACGCAAGGGTGGCGTCGTGGGAAGGCCTTTAC
CCGCCGACAATACCACCACCGTAGGAGGGATATCAGGCGTAGAGTTTTCG
TTGGGACGCAAATAAATAAAGGTCAAAATTTAGAACATTGTAGGAACATG
CACAGAATACTTAGAAAAATAATAAAATTACC back to topprotein sequence of jgi.p|Nanoce1779_2|592506 >mRNA_5435-protein ID=mRNA_5435-protein|Name=jgi.p|Nanoce1779_2|592506|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp
MMPKPKPSPEPRILRGHEASVQAVSFLGSSGSSNDGEPPLLVTGDADGHV
KLWDLGACRPRISWMPQQYSAPSLCMAPPTLSSMKGVLSLHALEQGRQLL
TQLRGGTISLWDMGEYGGQPRPVRSWATGSFHFCKVSVGGNVSATASATP
QQHHQQRLLLAPTAESEQFQLWDMRDGTRPAHTFAPSEPENRGLCMCLRL
VLPTTSVGEGDGAGGGAAAGEGFALAVYEDGSLCGWDLRRCCTSFTSSSC
SSSSSRSGSTAAFSVKLTEKETPVALDIGPSGNRGILGAAGCELVLFDLE
LAQHRCTKNKSLSLKHPGVGAVVVRSDEKLFATGGWDHRVRIFRWQDGAP
LAVLRGHSESVNSLAFSSDMSTLVSVGKDARVASWEGLYPPTIPPP* back to topmRNA from alignment at scaffold_13:419304..420635- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5435 ID=mRNA_5435|Name=jgi.p|Nanoce1779_2|592506|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp|location=Sequence derived from alignment at scaffold_13:419304..420635- (Nannochloropsis oceanica)
ACAGGCCATGTCAGCACCAGCACCAGCTCATCTATGATGCCCAAGCCCAA
GCCTTCCCCTGAGCCCCGTATCCTTCGGGGCCACGAGGCAAGCGTGCAAG
CAGTCTCCTTCCTGGGCAGCAGCGGTAGCAGCAATGATGGGGAGCCTCCC
CTCCTCGTGACGGGCGATGCCGACGGCCATGTAAAGCTCTGGGACCTTGG
CGCCTGTCGTCCGCGAATAAGCTGGATGCCGCAGCAGTATTCTGCCCCCT
CCTTGTGTATGGCGCCGCCGACCCTGTCATCGATGAAGGGTGTCTTGAGC
TTGCATGCGCTCGAACAAGGCCGGCAATTGTTGACGCAGCTTCGCGGGGG
AACCATTTCGTTGTGGGACATGGGCGAATATGGAGGGCAGCCCCGACCAG
TGCGTTCCTGGGCGACGGGTTCGTTTCATTTTTGTAAGGTCTCGGTGGGT
GGAAATGTCAGTGCTACAGCCAGTGCAACGCCACAGCAGCATCACCAGCA
GCGGTTATTGTTGGCGCCGACAGCCGAGTCGGAACAATTTCAATTGTGGG
ACATGCGGGATGGCACGCGTCCAGCGCATACATTTGCGCCTTCAGAGCCT
GAGAACAGGGGGCTGTGTATGTGTCTTCGCTTAGTGTTGCCCACCACTTC
TGTTGGGGAGGGAGATGGTGCTGGTGGTGGTGCTGCCGCTGGAGAGGGGT
TTGCGCTGGCGGTGTATGAAGATGGTTCTCTATGTGGATGGGATCTTAGA
CGTTGTTGTACCTCTTTTACGTCTTCTTCCTGCAGTAGCAGTAGTAGCCG
CAGTGGCAGTACTGCTGCGTTCTCTGTCAAGCTTACTGAGAAAGAAACGC
CCGTGGCTTTGGATATCGGGCCGTCGGGAAACCGAGGAATCTTAGGAGCA
GCAGGTTGTGAGCTCGTCCTTTTTGACCTGGAGCTGGCACAACACCGGTG
TACGAAAAATAAATCCCTCTCGCTGAAGCACCCAGGTGTAGGGGCAGTAG
TAGTGCGGAGTGATGAGAAGCTTTTCGCAACGGGAGGTTGGGACCATCGG
GTGCGTATTTTCCGGTGGCAAGATGGCGCACCTTTGGCAGTATTGAGAGG
ACATAGCGAAAGTGTGAACTCCTTGGCCTTTAGTTCGGATATGAGTACGC
TGGTCTCGGTGGGGAAGGACGCAAGGGTGGCGTCGTGGGAAGGCCTTTAC
CCGCCGACAATACCACCACCGTAGGAGGGATATCAGGCGTAGAGTTTTCG
TTGGGACGCAAATAAATAAAGGTCAAAATTTAGAACATTGTAGGAACATG
CACAGAATACTTAGAAAAATAATAAAATTACC back to topCoding sequence (CDS) from alignment at scaffold_13:419304..420635- >mRNA_5435 ID=mRNA_5435|Name=jgi.p|Nanoce1779_2|592506|organism=Nannochloropsis oceanica|type=CDS|length=1191bp|location=Sequence derived from alignment at scaffold_13:419304..420635- (Nannochloropsis oceanica)
ATGATGCCCAAGCCCAAGCCTTCCCCTGAGCCCCGTATCCTTCGGGGCCA
CGAGGCAAGCGTGCAAGCAGTCTCCTTCCTGGGCAGCAGCGGTAGCAGCA
ATGATGGGGAGCCTCCCCTCCTCGTGACGGGCGATGCCGACGGCCATGTA
AAGCTCTGGGACCTTGGCGCCTGTCGTCCGCGAATAAGCTGGATGCCGCA
GCAGTATTCTGCCCCCTCCTTGTGTATGGCGCCGCCGACCCTGTCATCGA
TGAAGGGTGTCTTGAGCTTGCATGCGCTCGAACAAGGCCGGCAATTGTTG
ACGCAGCTTCGCGGGGGAACCATTTCGTTGTGGGACATGGGCGAATATGG
AGGGCAGCCCCGACCAGTGCGTTCCTGGGCGACGGGTTCGTTTCATTTTT
GTAAGGTCTCGGTGGGTGGAAATGTCAGTGCTACAGCCAGTGCAACGCCA
CAGCAGCATCACCAGCAGCGGTTATTGTTGGCGCCGACAGCCGAGTCGGA
ACAATTTCAATTGTGGGACATGCGGGATGGCACGCGTCCAGCGCATACAT
TTGCGCCTTCAGAGCCTGAGAACAGGGGGCTGTGTATGTGTCTTCGCTTA
GTGTTGCCCACCACTTCTGTTGGGGAGGGAGATGGTGCTGGTGGTGGTGC
TGCCGCTGGAGAGGGGTTTGCGCTGGCGGTGTATGAAGATGGTTCTCTAT
GTGGATGGGATCTTAGACGTTGTTGTACCTCTTTTACGTCTTCTTCCTGC
AGTAGCAGTAGTAGCCGCAGTGGCAGTACTGCTGCGTTCTCTGTCAAGCT
TACTGAGAAAGAAACGCCCGTGGCTTTGGATATCGGGCCGTCGGGAAACC
GAGGAATCTTAGGAGCAGCAGGTTGTGAGCTCGTCCTTTTTGACCTGGAG
CTGGCACAACACCGGTGTACGAAAAATAAATCCCTCTCGCTGAAGCACCC
AGGTGTAGGGGCAGTAGTAGTGCGGAGTGATGAGAAGCTTTTCGCAACGG
GAGGTTGGGACCATCGGGTGCGTATTTTCCGGTGGCAAGATGGCGCACCT
TTGGCAGTATTGAGAGGACATAGCGAAAGTGTGAACTCCTTGGCCTTTAG
TTCGGATATGAGTACGCTGGTCTCGGTGGGGAAGGACGCAAGGGTGGCGT
CGTGGGAAGGCCTTTACCCGCCGACAATACCACCACCGTAG back to top
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