jgi.p|Nanoce1779_2|592504, mRNA_5434 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592504
Unique NamemRNA_5434
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1282
Alignment locationscaffold_13:417955..419236 +

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Properties
Property NameValue
TranscriptId592590
TrackFilteredModels2
ProteinId592504
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:417955..419236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592504gene_5434Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592504mRNA_5434-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5434CDS_5434Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5434 ID=mRNA_5434|Name=jgi.p|Nanoce1779_2|592504|organism=Nannochloropsis oceanica|type=mRNA|length=1282bp
AGTCCCATCCTTCCTCGAATCCCGTCATGAAGACTGCTGTCCTCTTCGTC
ACGGGCCTAATCGGCGCCCAGGCCTTCCTCGCCCCCAACGCCCCCTTGCC
CGCTACGACCAGGATGGAGGCCGCTAAGTCTGGCAAGGCCGGGGCTGCCA
AGGCCGCCAAGCCTCAGACTGCCAACAACTATCTGAAGGAGGTTGAGCCC
GGCGTCGGTCCTCTTGGGAAGTGGTACGTCCGCGAGGATCCGACCCTCTC
CACCGCCCTCCCTTGGGTGACCAAGCCGGAGATTGGGGACGGCTCCTTGG
TGGGTGACTTTGGCTTTGACCCCTTTGGTCTGTCGAAGATCTTCGATGTG
AACTGGCTGCGTAATGCTGAGCTCAAGCACGGGCGATTGGCCATGGTGGC
GACCCTCGGCATGGTGACTCCTGAGTTGGTCCAGGCCCCTTCCGGCTTCC
AAGGCTTCAAGTTCGCCCCCGAGTTCTCTGAGCTTAACGCCATCAAGGCC
TTGTCCGCCGTCCCCACCCTCGGCTTGTCCCAGATCCTCCTTGCCATCGC
CTTTATTGAGGTGGCCACCTTCGCCAAGGTTTACAACGAGCGATTCACCT
ATGAGGATAACCTGTCTCCATTGGAGCGCACCAAGGTCGTGCAAGGCCGA
TTCGGAGATTTGTCCGGTGCCGCCAAGACCCAGGCCAAGGCCGGTGTCAA
TGCCTTCGGTAATGCTGTTGACGTTGGTTTCCAGGACCCCGAGGCTTTCG
TCCCCGGTGACCTTGGTTTCGACCCGCTTGGATTCGCCGACAATGGTGTC
AACCCCGACTACGCTCTGGCTGAGATCAAGCACGCCCGTCTTGCCATGCT
CGGCGCGGCCGGCATGCTCATTCAGGAGTTTCTCCAGCCCAAGGGGATCC
TCACCCAGACTGCTGAGTGGGCCGCGGCGCAGTAAACTCTTTCCCGGAGG
GTTTACAGTTGCATCTTATCACCAGCACCACCATAGTCATCATCTCCACA
AACATAACACACCTCACTCACATGCTGCATTTCCCGGCTGCTGGGTACGT
CTGGTCCAGAGCTTTAAGCTGGTCCATGCATGCAGTGGTGGTCCTACATA
GGGTTAGTAGCTTAAAGAACAAAAAATCTCCCCCTCTTCCCTTTTTGCCC
ATCTTCCCCCCTCACCACATACGCAAGAAAGCAGAAGGAAAGGCTGGAAG
GAACAGAAGAAGGAAGAAAGGAAGTGATTTTATGGATTTTTCGGGAAAGG
GAGGGTACAGAAACAAGGACAAAATGAAAAAA
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protein sequence of jgi.p|Nanoce1779_2|592504

>mRNA_5434-protein ID=mRNA_5434-protein|Name=jgi.p|Nanoce1779_2|592504|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MKTAVLFVTGLIGAQAFLAPNAPLPATTRMEAAKSGKAGAAKAAKPQTAN
NYLKEVEPGVGPLGKWYVREDPTLSTALPWVTKPEIGDGSLVGDFGFDPF
GLSKIFDVNWLRNAELKHGRLAMVATLGMVTPELVQAPSGFQGFKFAPEF
SELNAIKALSAVPTLGLSQILLAIAFIEVATFAKVYNERFTYEDNLSPLE
RTKVVQGRFGDLSGAAKTQAKAGVNAFGNAVDVGFQDPEAFVPGDLGFDP
LGFADNGVNPDYALAEIKHARLAMLGAAGMLIQEFLQPKGILTQTAEWAA
AQ*
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mRNA from alignment at scaffold_13:417955..419236+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5434 ID=mRNA_5434|Name=jgi.p|Nanoce1779_2|592504|organism=Nannochloropsis oceanica|type=mRNA|length=1282bp|location=Sequence derived from alignment at scaffold_13:417955..419236+ (Nannochloropsis oceanica)
AGTCCCATCCTTCCTCGAATCCCGTCATGAAGACTGCTGTCCTCTTCGTC
ACGGGCCTAATCGGCGCCCAGGCCTTCCTCGCCCCCAACGCCCCCTTGCC
CGCTACGACCAGGATGGAGGCCGCTAAGTCTGGCAAGGCCGGGGCTGCCA
AGGCCGCCAAGCCTCAGACTGCCAACAACTATCTGAAGGAGGTTGAGCCC
GGCGTCGGTCCTCTTGGGAAGTGGTACGTCCGCGAGGATCCGACCCTCTC
CACCGCCCTCCCTTGGGTGACCAAGCCGGAGATTGGGGACGGCTCCTTGG
TGGGTGACTTTGGCTTTGACCCCTTTGGTCTGTCGAAGATCTTCGATGTG
AACTGGCTGCGTAATGCTGAGCTCAAGCACGGGCGATTGGCCATGGTGGC
GACCCTCGGCATGGTGACTCCTGAGTTGGTCCAGGCCCCTTCCGGCTTCC
AAGGCTTCAAGTTCGCCCCCGAGTTCTCTGAGCTTAACGCCATCAAGGCC
TTGTCCGCCGTCCCCACCCTCGGCTTGTCCCAGATCCTCCTTGCCATCGC
CTTTATTGAGGTGGCCACCTTCGCCAAGGTTTACAACGAGCGATTCACCT
ATGAGGATAACCTGTCTCCATTGGAGCGCACCAAGGTCGTGCAAGGCCGA
TTCGGAGATTTGTCCGGTGCCGCCAAGACCCAGGCCAAGGCCGGTGTCAA
TGCCTTCGGTAATGCTGTTGACGTTGGTTTCCAGGACCCCGAGGCTTTCG
TCCCCGGTGACCTTGGTTTCGACCCGCTTGGATTCGCCGACAATGGTGTC
AACCCCGACTACGCTCTGGCTGAGATCAAGCACGCCCGTCTTGCCATGCT
CGGCGCGGCCGGCATGCTCATTCAGGAGTTTCTCCAGCCCAAGGGGATCC
TCACCCAGACTGCTGAGTGGGCCGCGGCGCAGTAAACTCTTTCCCGGAGG
GTTTACAGTTGCATCTTATCACCAGCACCACCATAGTCATCATCTCCACA
AACATAACACACCTCACTCACATGCTGCATTTCCCGGCTGCTGGGTACGT
CTGGTCCAGAGCTTTAAGCTGGTCCATGCATGCAGTGGTGGTCCTACATA
GGGTTAGTAGCTTAAAGAACAAAAAATCTCCCCCTCTTCCCTTTTTGCCC
ATCTTCCCCCCTCACCACATACGCAAGAAAGCAGAAGGAAAGGCTGGAAG
GAACAGAAGAAGGAAGAAAGGAAGTGATTTTATGGATTTTTCGGGAAAGG
GAGGGTACAGAAACAAGGACAAAATGAAAAAA
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Coding sequence (CDS) from alignment at scaffold_13:417955..419236+

>mRNA_5434 ID=mRNA_5434|Name=jgi.p|Nanoce1779_2|592504|organism=Nannochloropsis oceanica|type=CDS|length=909bp|location=Sequence derived from alignment at scaffold_13:417955..419236+ (Nannochloropsis oceanica)
ATGAAGACTGCTGTCCTCTTCGTCACGGGCCTAATCGGCGCCCAGGCCTT
CCTCGCCCCCAACGCCCCCTTGCCCGCTACGACCAGGATGGAGGCCGCTA
AGTCTGGCAAGGCCGGGGCTGCCAAGGCCGCCAAGCCTCAGACTGCCAAC
AACTATCTGAAGGAGGTTGAGCCCGGCGTCGGTCCTCTTGGGAAGTGGTA
CGTCCGCGAGGATCCGACCCTCTCCACCGCCCTCCCTTGGGTGACCAAGC
CGGAGATTGGGGACGGCTCCTTGGTGGGTGACTTTGGCTTTGACCCCTTT
GGTCTGTCGAAGATCTTCGATGTGAACTGGCTGCGTAATGCTGAGCTCAA
GCACGGGCGATTGGCCATGGTGGCGACCCTCGGCATGGTGACTCCTGAGT
TGGTCCAGGCCCCTTCCGGCTTCCAAGGCTTCAAGTTCGCCCCCGAGTTC
TCTGAGCTTAACGCCATCAAGGCCTTGTCCGCCGTCCCCACCCTCGGCTT
GTCCCAGATCCTCCTTGCCATCGCCTTTATTGAGGTGGCCACCTTCGCCA
AGGTTTACAACGAGCGATTCACCTATGAGGATAACCTGTCTCCATTGGAG
CGCACCAAGGTCGTGCAAGGCCGATTCGGAGATTTGTCCGGTGCCGCCAA
GACCCAGGCCAAGGCCGGTGTCAATGCCTTCGGTAATGCTGTTGACGTTG
GTTTCCAGGACCCCGAGGCTTTCGTCCCCGGTGACCTTGGTTTCGACCCG
CTTGGATTCGCCGACAATGGTGTCAACCCCGACTACGCTCTGGCTGAGAT
CAAGCACGCCCGTCTTGCCATGCTCGGCGCGGCCGGCATGCTCATTCAGG
AGTTTCTCCAGCCCAAGGGGATCCTCACCCAGACTGCTGAGTGGGCCGCG
GCGCAGTAA
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Synonyms
Publications