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Properties
| Property Name | Value |
|---|
| TranscriptId | 592581 |
| Track | FilteredModels2 |
| ProteinId | 592495 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:411480..417058 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5433 ID=mRNA_5433|Name=jgi.p|Nanoce1779_2|592495|organism=Nannochloropsis oceanica|type=mRNA|length=1705bp
AACAGACATCCACTCTCCCGTCTCAAAGATGAAGTGCGCGATGGTTGTCC
TCGGCAGCTTGGCCATGGCCTCTGCCTTTGTCCCTGCCGCCCCTAAGATG
TCTCGCACTCGTGGCGTGGCCCGCATGGCCGTGAACGAGATCCTGGGCGC
GGACGTAGAGACGGGTGGCGTCTGGGACCCCCTGAATTTCTCCAAGGATG
AAGGAAGCCTCTACCGTTACAGGGCAGTCGAGCTCAAGCACGGCCGATTG
GCCATGCTCGCAGTTTTGGGCCTGTGGTTCTCTGAGTTCTACCACCCTCT
GTACGATGGTAAGATCAGCCCTGGCCTCAAGGCCATCGGTGAGCTCCCTG
GCGCCGCTTGGCTGCAGATCCTGGCCGCCATTGCGGTGGTTGAGTTGACG
ATCGGCAAGCAAGACACGGAGAACAAGGCCCCCGGCGACCTCGGGTTCGG
TTTGAACTTCAACCCCTTCAAGAATGACCCGGAGAAATTCGCGGAGCTGC
AGCTGAAGGAGCTCAAAAATGGTCGCTTGGCGATGCTTGGTGCCGCCGGC
ATCCTCCTGCAGGAGGGTCTCACTGGGCAGACGTGCTTTGAGCAAATTGC
TGCCCAGCACTTGAGCCCCTTTGGGGATGGACAGGGCTTCTTCTAAAAAT
CGGTCGTTGTTATCCACGTGCATTCAGCTTCGTCGTCCTATGTGGTCTCC
CATCCCAGCGCCATGGATACTTGAGAGAGGGAGAGATCGAGGACAGGGGT
AGGGTAGAGACGATAGCGGGAAGGATTATCTTCGTTGCGTGTCCAGCGGT
CTTCGGGAGCAAATATCCCTTGTACTCGTTCGTGCATTTGTGTCAGTGTG
TGACGCGGGATGAGAGCCGGGGCCAGGACCTACTGTTAGAGCGCCCGTAA
CGAAACCCAACATTTCTAGAAGGAATTAAGAAAAAAAAGATAAGTGAAAT
AAAGCGAGAGGGATCCTGAACGACAGGCCCAAATAAGCGTTTTCTCCAAT
TAAATCTTAATTGCTCTGCTTATCTAGTCATGTCAGTGACGACACAGAGA
CAATAAAATGCGCGTGTGTGTGAGAGTGTGTGTGTCATCGAACATCTTTT
TTACATTTCTTTAATTTTTTCACACCCGTTTCCTTTCCTCTCATTCTACC
TTTTATTTGATCAACTCTTATTCCCCTTCTTTGGACAGATAACGTGAGAT
ACTTTGTGTCTTACAATAAATAAAAATGTTTATATCTAAAAAACAATATT
TACGTCGGTCCTAGCGAGGACTGAGGGGGGGTAGAGCTGTTGGTGGTATA
TGATTTGTACCGACCCCTGTTTCTCCGCCAGTCACTGCCTTCTCCAAGGC
CCGATGTCGTCGGTGCTGACGACGTTTTCGATGAGCGTGAATTTCAGTGT
AATGCGCAAGAATGCGACATATATCCTCAAACGTCCAGCCCCTCTTGTGA
CCTTCGTTGCTGCCGCTGCTCCTGCCCCTGCCTGTGCGGTTGCTGCCGCT
TGAGGTTGCTGCCGCTATTAGTTTGACCTTCATCTCTTCCTCCTCTGCCT
CCACGATGGCTGCAAGCTCGGCCAACTCCGATGGCGAGGGCTTTAGACCT
AGGCCTAGAAAGAGGTCCTTCAGGTACCTCCGAGATAAGAGTTGTTGCTG
TTGCTGTTGGTGCTGATGTTGGTGCTGTTGGTGCTGTTCCCCTCCCTCTT
CCTCC back to topprotein sequence of jgi.p|Nanoce1779_2|592495 >mRNA_5433-protein ID=mRNA_5433-protein|Name=jgi.p|Nanoce1779_2|592495|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MKCAMVVLGSLAMASAFVPAAPKMSRTRGVARMAVNEILGADVETGGVWD
PLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWFSEFYHPLYDGKISPGL
KAIGELPGAAWLQILAAIAVVELTIGKQDTENKAPGDLGFGLNFNPFKND
PEKFAELQLKELKNGRLAMLGAAGILLQEGLTGQTCFEQIAAQHLSPFGD
GQGFF* back to topmRNA from alignment at scaffold_13:411480..417058- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5433 ID=mRNA_5433|Name=jgi.p|Nanoce1779_2|592495|organism=Nannochloropsis oceanica|type=mRNA|length=5579bp|location=Sequence derived from alignment at scaffold_13:411480..417058- (Nannochloropsis oceanica)
AACAGACATCCACTCTCCCGTCTCAAAGATGAAGTGCGCGATGGTTGTCC
TCGGCAGCTTGGCCATGGCCTCTGCCTTTGTCCCTGCCGCCCCTAAGATG
TCTCGCAGTAAGTACACAACGAGTGCTGGGTGGTCTCGGACACGGGGGGG
GGTAGAGAGGGGGCTTGACGCGCTAAGGGAGGCGCAAGAAAAAGGCGGAT
CGACACGCACAGGCTTGGAAGGCACGCCCATCTTTTTTGTCGGTAGCAGC
ATTTCATAGACGCTTTAGTATGTGTGGTTTGTACGTCCTACGTGGGGTGG
ATACTGTCGGCATATGGCGGTAGGATTTGCCTGAACCAGAGCCATACCAG
AAGACGATAATCCCGTTTGGGTTATTATTATGGTATAATGCGTGTAAGCA
CTTTGTCCAGAGTGTTTAGTAAGCTTAATTGACCTAGGTACTGCAGTCGG
TAATCCCTTCATTTTGCTCACTCGTCGGACCTCCATTTTTCTTCTTTCAA
CCACCCAAAACAGCTCGTGGCGTGGCCCGCATGGCCGTGAACGAGATCCT
GGGCGCGGACGTAGAGACGGGTGGCGTCTGGGACCCCCTGAATTTCTCCA
AGGATGAAGGAAGCCTCTACCGTTACAGGGCAGTCGGTGCGTTTACCCGT
CTATCTTCCCATCCCTCCCTCCCTCCCTGCCGCTCTTTCTCTCAATCACA
CACAATCCTTCTCTCCTCAATGGACGCGATGACTTCGTCTGCTGGATGCC
CTTTTGTGCCAGCGCCTTGTCATCCTACGAATGAAGATGTATGCACCCAC
GCATCATCGCCCTCCCTCCCTCCCTTCAACCCACCCCTCCAGAGCTCAAG
CACGGCCGATTGGCCATGCTCGCAGTTTTGGGCCTGTGGTTCTCTGAGTT
CTACCACCCTCTGTACGATGGTAAGATCAGCCCTGGCCTCAAGGCCATCG
GTGAGCTCCCTGGCGCCGCTTGGCTGCAGATCCTGGCCGCCATTGCGGTG
GTTGAGTTGACGATCGGCAAGCAAGACACGGAGAACAAGGCCCCCGGCGA
CCTCGGGTTCGGTTTGAACTTCAACCCCTTCAAGAATGACCCGGAGAAAT
TCGCGGAGCTGCAGCTGAAGGAGCTCAAAAATGGTCGCTTGGCGATGCTT
GGTGCCGCCGGCATCCTCCTGCAGGAGGGTCTCACTGGGCAGACGTGCTT
TGAGCAAATTGCTGCCCAGCACTTGAGCCCCTTTGGGGATGGACAGGGCT
TCTTCTAAGTACGTACATTGAATGTCTTGGAGGAGTTTGGAGATTTGATT
GTTGGGAAGCTGCCGCGTTTTTGGTTTTGTTTGAAGCGTCGCCCCCTCCG
TCTTCTTCTGGATTACTCTACCCTACCCTCACCCTCACCTTACCGTCTTG
CGTCTTTTTCCACCCACACAGAAATCGGTCGTTGTTATCCACGTGCATTC
AGCTTCGTCGTCCTATGTGGTCTCCCATCCCAGCGCCATGGATACTTGAG
AGAGGGAGAGATCGAGGACAGGGGTAGGGTAGAGACGATAGCGGGAAGGA
TTATCTTCGTTGCGTGTCCAGCGGTCTTCGGGAGCAAATATCCCTTGTAC
TCGTTCGTGCATTTGTGTCAGTGTGTGACGCGGGATGAGAGCCGGGGCCA
GGACCTACTGTTAGAGCGCCCGTAACGAAACCCAACATTTCTAGAAGGAA
TTAAGAAAAAAAAGATAAGTGAAATAAAGCGAGAGGGATCCTGAACGACA
GGCCCAAATAAGCGTTTTCTCCAATTAAATCTTAATTGCTCTGCTTATCT
AGTCATGTCAGTGACGACACAGAGACAATAAAATGCGCGTGTGTGTGAGA
GTGTGTGTGTCATCGAACATCTTTTTTACATTTCTTTAATTTTTTCACAC
CCGTTTCCTTTCCTCTCATTCTACCTTTTATTTGATCAACTCTTATTCCC
CTTCTTTGGACAGATAACGTGAGATACTTTGTGTCTTACAATAAATAAAA
ATGTTTATATCTAAAAAACAATATTTACGTCGGTCCTAGCGAGGACTGAG
GGGGGGTAGAGCTGTTGGTGGTATATGATTTGTACCGACCCCTGTTTCTC
CGCCAGTCACTGCCTTCTCCAAGGCCCGATGTCGTCGGTGCTGACGACGT
TTTCGATGAGCGTGAATTTCAGTGTAATGCGCAAGAATGCGACATATATC
CTCAAACGTCCAGCCCCTCTTGTGACCTTCGTTGCTGCCGCTGCTCCTGC
CCCTGCCTGTGCGGTTGCTGCCGCTTGAGGTTGCTGCCGCTATTAGTTTG
ACCTTCATCTCTTCCTCCTCTGCCTCCACGATGGCTGCAAGCTCGGCCAA
CTCCGATGGCGAGGGCTTTAGACCTAGGCCTAGAAAGAGGTCCTTCAGGT
ACCTCCGAGATAAGAGTTGTTGCTGTTGCTGTTGGTGCTGATGTTGGTGC
TGTTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTCTTTGATGGTGTTGTCGAAAGCCCGAGATA
TTCGCGCCAGGCGAAAGAAGTAGATTGAGCTGAAGAGTTGGGAGAAGGCC
ACCATGGCGACCAGTGCTGCCAATATCGCTTCCTCGATTTTTACGCCCGG
TGACACATCTGCTGCCCTTGATGACCTCGTGGTGAGGCCTAGCACCACAG
ATAGGACAATGTACGGTCCGAGAACGCTTGCGTTGAACAAGAGCTGGACT
GTTAGAGGGAATAGACTCATTCTTTTTCTCACTCTGGTCCCCCCACCCTC
TCCGGCTGAAGCTTGGTGTTTCCCGTTCTGCGCGAGGACAAAGAGCACTC
GTACATCCAAGACAAGCCCGATGCCAGCCAGGGTCAATGATGAGGCTTCG
CGCCAGGATTCATTGTGATGGCTACTGGAGCCCGCTGCCATAAGGATGAT
TAACACGGCGAGGGCAAGAGCGAGACTCGAAAGACCGAGTTGCAGATGAT
GCTGTAGGCGAGGCCTAAAGGCCCAAGGCGGACGCGGCAAGGCGTCGGGG
ACGTGCGATGGTGATGATGTGGAGTGAAAAGGGGCGTGGGAAGAGGGCAG
CAGGGGCGTGGTGGTGGAAGTAGAGGATGGCGGCATGCTATGTGAGAGTA
GGTTGGAAGAAAGTCGGTTGAGACGACGCGTGGATTGGCCAAGCAGATGA
AGCGAGCGGATGAAATTTCTTTTAAAAGACGCCTCATGGTGGAGGCTGCG
TATTTAAACTCGTGTGAGGGTTGCCTTCTTCTTGTTCCACACACAGCTCT
TCATTCCATCACCCTCAGTGACGTCACATACTAGTGGTACTCCCGAATCC
GGCTCCTGGTGGTCTGAAGGGCATTTTTAAGTTGTCTGCTTACCTTATTT
CCAGTCCACATCATCTTTAAGGGAAGATTAGTCCTTGCTTTGACCTCTTC
AGGAGAATCTCTCATGCGCATGCTCCTCGCCCACCCACCTCTCACCCTTG
TTCCACAAGTTCTTCTTTTCGTGCGAGTGTGCCCGCACACTCTTTCTTCC
GCACTCATCAGGATCGCAACTGTCAAAAGTTATATCCTACTAATTCGATA
TAGTTTTGGTAATGGCATGGAGGGAGGGGGGGGGAGTCTCTCGGGCCCAA
GTGGCGACAGAACGTTGCTATCTGCAGAAGCACCAGGCCATCTGCCACAA
GCAGAAGGTAAACATGCAAAGGATCAACACATCGAAATGCGCACAAAGCA
CAATGGCCACGACCTAAGTACACACACTGGCATTTATAAGGAACAGTAGA
ACTGAGACTCGTGGGTTGCTCAGGAGCGTGATTTTGGGGTATTAGCTCTG
GTGGGACAATCGGGACTTTCAAACTGAAGATTTCTCGAAACCAGTTTATC
CAGAAATGAAGCGCTGATAATGAACGAGCAACGAGGGGGAAAAGCACGAT
GTTGTTTCCTGTGCCCCTTCTCCTGAATTCTTCCTCGCGATAGCGAGTAG
ATGCATCATAGTGGCCGAAAGTGCTTGGCTAGGAAAATTTCAGCATGGGA
CGCAGGCTCCCCTCACGCAAAAGAACAACGAAGATGCAAGTGGCCTCGCT
CTTCTGATTTGGAACAATTATTTCAGGAATTGAAGATGCACAGGAGCACA
AGCGATGGGTCCGTCTGCGCATGGCTTCCTTGCTGCGGTGGCCCGAACTT
ACGAGTGTGCACTATCCGCCAAATTGCCACACTCTCTGCTAACAATGTCT
CGGGCTCACTTCCCCTATTCCCGCCTGTTGCCCCGTCTCGGTCAGCTCAC
GACTCAACACCCCCCATTTTGTCCATACACACCTCAGCAGCAGCTGCTCT
GCCCGATGACCACACTCGATTATGTCACCGGTGCGGCAGGAACCGAGGAC
AAAAAGATACAGGGCGTAGGAGACCCTCGCATCATCACCACTAGCAGTGC
TAGCAAGAGCCACCATCCGATTTCGCCCAGGAGCGCCTCCTCCTTCCGTC
CAGCATCGTCGTATGCCTCCTCCCCCTCCTCGTCCTCATCCGTCTCCTCG
AAACGAAGCAGTTCCAGCAGCAGCAAGCCCATTACCTATGGCACGTCGAC
TTTGCTGCCGCCATCTGTGCTCCCTCCCGAATACCTGCATGATATGCGGG
AGACCATCCGGCAACGCCTGGAGGCCATGCCGGCAGATCGGGAAACTGAC
CTGGTGGCCTTTGCTGAATGGGTTTCCCTGTTCGTCGGGCGCACTCTGAC
TAGCCGCCGAACAGGTCTGTTGCTGCCCCCCACGGTGGCCTCGTCCAAGG
CCATTTGCAGCAGCAGGGGGAAAAGTTGTGCAGCTGGCGATGATTCGGAG
AAAACGGAGGAGCGTCGGCAACGGCGCAAGACGGAGACTGCGGCAGCGGC
GGCGGCGCAGCAAGACGATGAACACATGTTTGTAGTGGGACAGGGCTATT
CTCGTCCCGCGCCCAATTCGCCTTCGTCCTACTCCACTTCGTCTGCCGAG
AGCTGTGTTGACACCACCACTGTCGGCAGTGGGATGCACCCTGAAAGTGA
GCAGGGAGATGAGCAGCAGCAGCAGCAGCAGTCTGCCGTCGCGGATGTTG
CAGTAGTCTCGGCCGGTGCAGTTACTGGTGCCGGCACATCCCCCAGGCCG
AAGGTTTCCGGCAACCCGAGCGACTTGGAACTCATATCCATTCTTTTGGA
TTTCTCCAGTAAGGCCAAGGCCACAGCACCGCAACGAAAAGCCACGCCCA
TGCCCGGGTCCATCTCCTCTGACTCATCTTCTCCCTCCTCCATCGTGTCG
CCCAGAAAGACCAAGAAGAAAGCCAGCCCCCTGTTACCTATTCCCTCCCG
CCACGAAACGCCGCATCATTCCTCGGTGCTGCTAAACACAGCCGCTCAAG
CACCTGCCGTAATCCACAACAGTTCGGCCACCGGCCAGTCCTCCCCTTCT
CCTCTTCCCTCGACGACGGCAGATACGCATCAGTCCTCTCATGTTAACAT
GTCGATGGCGCTGCACAAGCCGTCGATTCCTATGCCACTTCATTCTTCGT
CGTCTTTCTCTTCCCCTCCCTCTTCCTCC back to topCoding sequence (CDS) from alignment at scaffold_13:411480..417058- >mRNA_5433 ID=mRNA_5433|Name=jgi.p|Nanoce1779_2|592495|organism=Nannochloropsis oceanica|type=CDS|length=1854bp|location=Sequence derived from alignment at scaffold_13:411480..417058- (Nannochloropsis oceanica)
AGCTCAAGCACGGCCGATTGGCCATGCTCGCAGTTTTGGGCCTGTGGTTC
TCTGAGTTCTACCACCCTCTGTACGATGGTAAGATCAGCCCTGGCCTCAA
GGCCATCGGTGAGCTCCCTGGCGCCGCTTGGCTGCAGATCCTGGCCGCCA
TTGCGGTGGTTGAGTTGACGATCGGCAAGCAAGACACGGAGAACAAGGCC
CCCGGCGACCTCGGGTTCGGTTTGAACTTCAACCCCTTCAAGAATGACCC
GGAGAAATTCGCGGAGCTGCAGCTGAAGGAGCTCAAAAATGGTCGCTTGG
CGATGCTTGGTGCCGCCGGCATCCTCCTGCAGGAGGGTCTCACTGGGCAG
ACGTGCTTTGAGCAAATTGCTGCCCAGCACTTGAGCCCCTTTGGGGATGG
ACAGGGCTTCTTCTAACTCGTGGCGTGGCCCGCATGGCCGTGAACGAGAT
CCTGGGCGCGGACGTAGAGACGGGTGGCGTCTGGGACCCCCTGAATTTCT
CCAAGGATGAAGGAAGCCTCTACCGTTACAGGGCAGTCGATGAAGTGCGC
GATGGTTGTCCTCGGCAGCTTGGCCATGGCCTCTGCCTTTGTCCCTGCCG
CCCCTAAGATGTCTCGCAAGCTCAAGCACGGCCGATTGGCCATGCTCGCA
GTTTTGGGCCTGTGGTTCTCTGAGTTCTACCACCCTCTGTACGATGGTAA
GATCAGCCCTGGCCTCAAGGCCATCGGTGAGCTCCCTGGCGCCGCTTGGC
TGCAGATCCTGGCCGCCATTGCGGTGGTTGAGTTGACGATCGGCAAGCAA
GACACGGAGAACAAGGCCCCCGGCGACCTCGGGTTCGGTTTGAACTTCAA
CCCCTTCAAGAATGACCCGGAGAAATTCGCGGAGCTGCAGCTGAAGGAGC
TCAAAAATGGTCGCTTGGCGATGCTTGGTGCCGCCGGCATCCTCCTGCAG
GAGGGTCTCACTGGGCAGACGTGCTTTGAGCAAATTGCTGCCCAGCACTT
GAGCCCCTTTGGGGATGGACAGGGCTTCTTCTAACTCGTGGCGTGGCCCG
CATGGCCGTGAACGAGATCCTGGGCGCGGACGTAGAGACGGGTGGCGTCT
GGGACCCCCTGAATTTCTCCAAGGATGAAGGAAGCCTCTACCGTTACAGG
GCAGTCGATGAAGTGCGCGATGGTTGTCCTCGGCAGCTTGGCCATGGCCT
CTGCCTTTGTCCCTGCCGCCCCTAAGATGTCTCGCAAGCTCAAGCACGGC
CGATTGGCCATGCTCGCAGTTTTGGGCCTGTGGTTCTCTGAGTTCTACCA
CCCTCTGTACGATGGTAAGATCAGCCCTGGCCTCAAGGCCATCGGTGAGC
TCCCTGGCGCCGCTTGGCTGCAGATCCTGGCCGCCATTGCGGTGGTTGAG
TTGACGATCGGCAAGCAAGACACGGAGAACAAGGCCCCCGGCGACCTCGG
GTTCGGTTTGAACTTCAACCCCTTCAAGAATGACCCGGAGAAATTCGCGG
AGCTGCAGCTGAAGGAGCTCAAAAATGGTCGCTTGGCGATGCTTGGTGCC
GCCGGCATCCTCCTGCAGGAGGGTCTCACTGGGCAGACGTGCTTTGAGCA
AATTGCTGCCCAGCACTTGAGCCCCTTTGGGGATGGACAGGGCTTCTTCT
AACTCGTGGCGTGGCCCGCATGGCCGTGAACGAGATCCTGGGCGCGGACG
TAGAGACGGGTGGCGTCTGGGACCCCCTGAATTTCTCCAAGGATGAAGGA
AGCCTCTACCGTTACAGGGCAGTCGATGAAGTGCGCGATGGTTGTCCTCG
GCAGCTTGGCCATGGCCTCTGCCTTTGTCCCTGCCGCCCCTAAGATGTCT
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