Properties
| Property Name | Value |
|---|
| TranscriptId | 592583 |
| Track | FilteredModels2 |
| ProteinId | 592497 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:412931..414562 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5431 ID=mRNA_5431|Name=jgi.p|Nanoce1779_2|592497|organism=Nannochloropsis oceanica|type=mRNA|length=1376bp
GCTGCTGCTGCTGCTGCTGCTGCTCTTTGATGGTGTTGTCGAAAGCCCGA
GATATTCGCGCCAGGCGAAAGAAGTAGATTGAGCTGAAGAGTTGGGAGAA
GGCCACCATGGCGACCAGTGCTGCCAATATCGCTTCCTCGATTTTTACGC
CCGGTGACACATCTGCTGCCCTTGATGACCTCGTGGTGAGGCCTAGCACC
ACAGATAGGACAATGTACGGTCCGAGAACGCTTGCGTTGAACAAGAGCTG
GACTGTTAGAGGGAATAGACTCATTCTTTTTCTCACTCTGGTCCCCCCAC
CCTCTCCGGCTGAAGCTTGGTGTTTCCCGTTCTGCGCGAGGACAAAGAGC
ACTCGTACATCCAAGACAAGCCCGATGCCAGCCAGGGTCAATGATGAGGC
TTCGCGCCAGGATTCATTGTGATGGCTACTGGAGCCCGCTGCCATAAGGA
TGATTAACACGGCGAGGGCAAGAGCGAGACTCGAAAGACCGAGTTGCAGA
TGATGCTGTAGGCGAGGCCTAAAGGCCCAAGGCGGACGCGGCAAGGCGTC
GGGGACGTGCGATGGTGATGATGTGGAGTGAAAAGGGGCGTGGGAAGAGG
GCAGCAGGGGCGTGGTGGTGGAAGTAGAGGATGGCGGCATGCTTATTTCC
AGTCCACATCATCTTTAAGGGAAGATTAGTCCTTGCTTTGACCTCTTCAG
GAGAATCTCTCATGCGCATGCTCCTCGCCCACCCACCTCTCACCCTTGTT
CCACAAGTTCTTCTTTTCGTGCGAGTGTGCCCGCACACTCTTTCTTCCGC
ACTCATCAGGATCGCAACTGTCAAAAGTTATATCCTACTAATTCGATATA
GTTTTGGTAATGGCATGGAGGGAGGGGGGGGGAGTCTCTCGGGCCCAAGT
GGCGACAGAACGTTGCTATCTGCAGAAGCACCAGGCCATCTGCCACAAGC
AGAAGGTAAACATGCAAAGGATCAACACATCGAAATGCGCACAAAGCACA
ATGGCCACGACCTAAGTACACACACTGGCATTTATAAGGAACAGTAGAAC
TGAGACTCGTGGGTTGCTCAGGAGCGTGATTTTGGGGTATTAGCTCTGGT
GGGACAATCGGGACTTTCAAACTGAAGATTTCTCGAAACCAGTTTATCCA
GAAATGAAGCGCTGATAATGAACGAGCAACGAGGGGGAAAAGCACGATGT
TGTTTCCTGTGCCCCTTCTCCTGAATTCTTCCTCGCGATAGCGAGTAGAT
GCATCATAGTGGCCGAAAGTGCTTGGCTAGGAAAATTTCAGCATGGGACG
CAGGCTCCCCTCACGCAAAAGAACAACGAAGATGCAAGTGGCCTCGCTCT
TCTGATTTGGAACAATTATTTCAGGA back to topprotein sequence of jgi.p|Nanoce1779_2|592497 >mRNA_5431-protein ID=mRNA_5431-protein|Name=jgi.p|Nanoce1779_2|592497|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MAACLFPVHIIFKGRLVLALTSSGESLMRMLLAHPPLTLVPQVLLFVRVC
PHTLSSALIRIATVKSYILLIRYSFGNGMEGGGGSLSGPSGDRTLLSAEA
PGHLPQAEGKHAKDQHIEMRTKHNGHDLSTHTGIYKEQ* back to topmRNA from alignment at scaffold_13:412931..414562- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5431 ID=mRNA_5431|Name=jgi.p|Nanoce1779_2|592497|organism=Nannochloropsis oceanica|type=mRNA|length=1632bp|location=Sequence derived from alignment at scaffold_13:412931..414562- (Nannochloropsis oceanica)
GCTGCTGCTGCTGCTGCTGCTGCTCTTTGATGGTGTTGTCGAAAGCCCGA
GATATTCGCGCCAGGCGAAAGAAGTAGATTGAGCTGAAGAGTTGGGAGAA
GGCCACCATGGCGACCAGTGCTGCCAATATCGCTTCCTCGATTTTTACGC
CCGGTGACACATCTGCTGCCCTTGATGACCTCGTGGTGAGGCCTAGCACC
ACAGATAGGACAATGTACGGTCCGAGAACGCTTGCGTTGAACAAGAGCTG
GACTGTTAGAGGGAATAGACTCATTCTTTTTCTCACTCTGGTCCCCCCAC
CCTCTCCGGCTGAAGCTTGGTGTTTCCCGTTCTGCGCGAGGACAAAGAGC
ACTCGTACATCCAAGACAAGCCCGATGCCAGCCAGGGTCAATGATGAGGC
TTCGCGCCAGGATTCATTGTGATGGCTACTGGAGCCCGCTGCCATAAGGA
TGATTAACACGGCGAGGGCAAGAGCGAGACTCGAAAGACCGAGTTGCAGA
TGATGCTGTAGGCGAGGCCTAAAGGCCCAAGGCGGACGCGGCAAGGCGTC
GGGGACGTGCGATGGTGATGATGTGGAGTGAAAAGGGGCGTGGGAAGAGG
GCAGCAGGGGCGTGGTGGTGGAAGTAGAGGATGGCGGCATGCTATGTGAG
AGTAGGTTGGAAGAAAGTCGGTTGAGACGACGCGTGGATTGGCCAAGCAG
ATGAAGCGAGCGGATGAAATTTCTTTTAAAAGACGCCTCATGGTGGAGGC
TGCGTATTTAAACTCGTGTGAGGGTTGCCTTCTTCTTGTTCCACACACAG
CTCTTCATTCCATCACCCTCAGTGACGTCACATACTAGTGGTACTCCCGA
ATCCGGCTCCTGGTGGTCTGAAGGGCATTTTTAAGTTGTCTGCTTACCTT
ATTTCCAGTCCACATCATCTTTAAGGGAAGATTAGTCCTTGCTTTGACCT
CTTCAGGAGAATCTCTCATGCGCATGCTCCTCGCCCACCCACCTCTCACC
CTTGTTCCACAAGTTCTTCTTTTCGTGCGAGTGTGCCCGCACACTCTTTC
TTCCGCACTCATCAGGATCGCAACTGTCAAAAGTTATATCCTACTAATTC
GATATAGTTTTGGTAATGGCATGGAGGGAGGGGGGGGGAGTCTCTCGGGC
CCAAGTGGCGACAGAACGTTGCTATCTGCAGAAGCACCAGGCCATCTGCC
ACAAGCAGAAGGTAAACATGCAAAGGATCAACACATCGAAATGCGCACAA
AGCACAATGGCCACGACCTAAGTACACACACTGGCATTTATAAGGAACAG
TAGAACTGAGACTCGTGGGTTGCTCAGGAGCGTGATTTTGGGGTATTAGC
TCTGGTGGGACAATCGGGACTTTCAAACTGAAGATTTCTCGAAACCAGTT
TATCCAGAAATGAAGCGCTGATAATGAACGAGCAACGAGGGGGAAAAGCA
CGATGTTGTTTCCTGTGCCCCTTCTCCTGAATTCTTCCTCGCGATAGCGA
GTAGATGCATCATAGTGGCCGAAAGTGCTTGGCTAGGAAAATTTCAGCAT
GGGACGCAGGCTCCCCTCACGCAAAAGAACAACGAAGATGCAAGTGGCCT
CGCTCTTCTGATTTGGAACAATTATTTCAGGA back to topCoding sequence (CDS) from alignment at scaffold_13:412931..414562- >mRNA_5431 ID=mRNA_5431|Name=jgi.p|Nanoce1779_2|592497|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_13:412931..414562- (Nannochloropsis oceanica)
CTTATTTCCAGTCCACATCATCTTTAAGGGAAGATTAGTCCTTGCTTTGA
CCTCTTCAGGAGAATCTCTCATGCGCATGCTCCTCGCCCACCCACCTCTC
ACCCTTGTTCCACAAGTTCTTCTTTTCGTGCGAGTGTGCCCGCACACTCT
TTCTTCCGCACTCATCAGGATCGCAACTGTCAAAAGTTATATCCTACTAA
TTCGATATAGTTTTGGTAATGGCATGGAGGGAGGGGGGGGGAGTCTCTCG
GGCCCAAGTGGCGACAGAACGTTGCTATCTGCAGAAGCACCAGGCCATCT
GCCACAAGCAGAAGGTAAACATGCAAAGGATCAACACATCGAAATGCGCA
CAAAGCACAATGGCCACGACCTAAGTACACACACTGGCATTTATAAGGAA
CAGTAGATGGCGGCATGCTTATTTCCAGTCCACATCATCTTTAAGGGAAG
ATTAGTCCTTGCTTTGACCTCTTCAGGAGAATCTCTCATGCGCATGCTCC
TCGCCCACCCACCTCTCACCCTTGTTCCACAAGTTCTTCTTTTCGTGCGA
GTGTGCCCGCACACTCTTTCTTCCGCACTCATCAGGATCGCAACTGTCAA
AAGTTATATCCTACTAATTCGATATAGTTTTGGTAATGGCATGGAGGGAG
GGGGGGGGAGTCTCTCGGGCCCAAGTGGCGACAGAACGTTGCTATCTGCA
GAAGCACCAGGCCATCTGCCACAAGCAGAAGGTAAACATGCAAAGGATCA
ACACATCGAAATGCGCACAAAGCACAATGGCCACGACCTAAGTACACACA
CTGGCATTTATAAGGAACAGTAGATGGCGGCATG back to top
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