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Properties
| Property Name | Value |
|---|
| TranscriptId | 668629 |
| Track | FilteredModels2 |
| ProteinId | 668543 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:1311056..1313398 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_543 ID=mRNA_543|Name=jgi.p|Nanoce1779_2|668543|organism=Nannochloropsis oceanica|type=mRNA|length=1699bp
AAACACTACAGAAGAAGCAAGGGGAGGAGGAGCACAAGAAGGACACATTC
TGCCCGGACTGCAAGGTCGCTCCTTGGCCAGGCTGCTGATGGAGCCTCCC
GCTGACCTCTCTCCATCGGCTCGGAAGCGACCACGGACATCCACTTCCTC
ATCCTCGTCCAACATTGACACCTTACAAGATATCCACGGCATGCCCTCTC
TTCAAGCTGCCATAATCGCCGCCCGTGCCCTGCTCAAACGTCGTCTCTCT
CCCGGCTACCTCCCCCCTCCCTCCGACCCCGCCCCCCTCGGTCTCGAAGC
TCAGTCCTCCCAAATCCAAGAGTTATTAGTCAAAGCCTTGGACAAACGAA
TGCACGAGCCTTTCTTATTGGTAGGATCGCGGGGAACGGGGAAGAGTCTG
TGTCTGGAGCACGCATTCGCGAGATTGAGAGAGCGGTATCGCGTGCAGGG
GAAACTACGGCCTTTTAGGGTGGTATATGTTAATGGTCGAATGGAGAGTA
CGGATGTGGGGGCAATCAGTGAAATTGCGGCGCAGCTGGAGATGAGCAAG
ACGTTGGATACCTCGAAAAGGAGATCGACAGGGGGCAGCGCGGCAGGAGG
GAGGGGGGGAGGGAGGGGGGCGAGGAATCAGCTGGATTTTGTGGTGGAGG
GGATGAGGAGTGGCACGTTTGAGGAGACGCCGTTGGTGTTTGTTATCGAC
AATATTGAGGAATTTGCGCGGCGAGGGGGAAGAGGAGGGGGAGGAGGAGG
AGGAGCAGGAGGGGGGGGAAAGCAGTTGTTGTTGTATTCGTTAATGGATT
TGCAGCACCGGGACGATCTTCAGTTTGTGGTGTTGGGGGTGTCGGCAGAG
CTTGATGTGTTGGACCGTTTCGAGAAACGCATCCGTTCACGTATTTCCAA
CAAACAGATCTTCTTCCCCCCCGCCCAGCCACTCGCCTCCGTCATCCTCC
CCATCTTTGACCAGGCTCTCCACCTCCCCGACGACCCCCCCTCTTCCTAC
CCCTCTCTCTCTCCCTCCTTCGATCACTCCTCCTCGGACATTGTGGAGGT
ACAGCGACGTTACGCTCGGGCATTTAATAACGCCTGGGCTGCCCTCCGTC
CGTCCCTTCCCCCCCTCCTCGAATGGCCCCAGAAACTGGGTCGCCCTTTG
CGATGGTTCACCACCTTGGCTTATCGTGCAGTGACTAACCTAGACTCAGA
GACACCGTTTCTGACTTTGGCTCATTTTAACGAAGCGTTAAAAATGCAGG
CTCCGCATACCACGGCGGCGAGTAGGGGTGGATTCGCCACGTTGGCTAAT
TTGGAGTTGCTGGTTGTGATTGCCATGAAGAGGTTAGTGGATCGGGGGAA
AGAAAAGTGTACGCTGGATATGATTTGGAAGGAATATGAGGCGTTCTTGA
AGCAAGAGCCCTTGCTGCCTTGTCGATATTCGAGACCGGTGTTGCACAAA
GGGTTGCTGAACGTATTGGCGTTGGGTCTTGCGTGCGTCTGTCACCGTGT
CCCACCAGGAGGGAAGTCCTATCTGGAGCAATGCCCCTTGCCACCAGACA
AGGATTTTGGGTCGTTGGATGCCGCGGACTTGGGGTCGGCGCCATTGTGC
ATCACTTTCTACCCTCAGGATTTGCATGATTTCTTGGTGGCGCAGGAGCA
TGCGCTGCCGACGTTGTTGACGCGATGGGGGAGTTCGTGGACGGAGTAG back to topprotein sequence of jgi.p|Nanoce1779_2|668543 >mRNA_543-protein ID=mRNA_543-protein|Name=jgi.p|Nanoce1779_2|668543|organism=Nannochloropsis oceanica|type=polypeptide|length=537bp
MEPPADLSPSARKRPRTSTSSSSSNIDTLQDIHGMPSLQAAIIAARALLK
RRLSPGYLPPPSDPAPLGLEAQSSQIQELLVKALDKRMHEPFLLVGSRGT
GKSLCLEHAFARLRERYRVQGKLRPFRVVYVNGRMESTDVGAISEIAAQL
EMSKTLDTSKRRSTGGSAAGGRGGGRGARNQLDFVVEGMRSGTFEETPLV
FVIDNIEEFARRGGRGGGGGGGAGGGGKQLLLYSLMDLQHRDDLQFVVLG
VSAELDVLDRFEKRIRSRISNKQIFFPPAQPLASVILPIFDQALHLPDDP
PSSYPSLSPSFDHSSSDIVEVQRRYARAFNNAWAALRPSLPPLLEWPQKL
GRPLRWFTTLAYRAVTNLDSETPFLTLAHFNEALKMQAPHTTAASRGGFA
TLANLELLVVIAMKRLVDRGKEKCTLDMIWKEYEAFLKQEPLLPCRYSRP
VLHKGLLNVLALGLACVCHRVPPGGKSYLEQCPLPPDKDFGSLDAADLGS
APLCITFYPQDLHDFLVAQEHALPTLLTRWGSSWTE* back to topmRNA from alignment at scaffold_3:1311056..1313398- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_543 ID=mRNA_543|Name=jgi.p|Nanoce1779_2|668543|organism=Nannochloropsis oceanica|type=mRNA|length=2343bp|location=Sequence derived from alignment at scaffold_3:1311056..1313398- (Nannochloropsis oceanica)
AAACACTACAGAAGAAGCAAGGGGAGGAGGAGCACAAGAAGGACACATTC
TGCCCGGACTGCAAGGTCGCTCCTTGGCCAGGCTGCTGATGGAGCCTCCC
GCTGACCTCTCTCCATCGGCTCGGAAGCGACCACGGACATGTACGTCCTG
CTGCTGCCTTCTGCCTCGTCTACCAGTCTATTTCCCTATCATCATTCCCT
CCCTACGTCTGTGGTCAGCTCTTTTAATTGTCCCTAAGATGTTTTAGATG
CCGAAACCCTTCGTTCCCTCCCCCCCTCCCTATTTCCCTCTTGCTCTCCT
TCCCTCCCATCCCACTCCTGCTCCTCCAACACCCCAACCATACTCTCCTC
CTTCCTTTCTTCTCTTCCCAACTTTCTAGATGCAAAGATCCAATCTGCAT
GAGTGTGCCTGACCTGATTGACACGATGCTGACACCCTTCCTCCCTTCTT
CCTCTCCCCCACCCCACCATTGTTACCACCTATCGTACTACGAAGCCACT
TCCTCATCCTCGTCCAACATTGACACCTTACAAGATATCCACGGCATGCC
CTCTCTTCAAGCTGCCATAATCGCCGCCCGTGCCCTGCTCAAACGTCGTC
TCTCTCCCGGCTACCTCCCCCCTCCCTCCGACCCCGCCCCCCTCGGTCTC
GAAGCTCAGTCCTCCCAAATCCAAGAGTTATTAGTCAAAGCCTTGGACAA
ACGAATGCACGAGCCTTTCTTATTGGTAGGATCGCGGGGAACGGGGAAGA
GTCTGTGTCTGGAGCACGCATTCGCGAGATTGAGAGAGCGGTATCGCGTG
CAGGGGAAACTACGGCCTTTTAGGGTGGTATATGTTAATGGTCGAATGGA
GAGTACGGATGTGGGGGCAATCAGTGAAATTGCGGCGCAGCTGGAGATGA
GCAAGACGTTGGATACCTCGAAAAGGAGATCGACAGGGGGCAGCGCGGCA
GGAGGGAGGGGGGGAGGGAGGGGGGCGAGGAATCAGCTGGATTTTGTGGT
GGAGGGGATGAGGAGTGGCACGTTTGAGGAGACGCCGTTGGTGTTTGTTA
TCGACAATATTGAGGAATTTGCGCGGCGAGGGGGAAGAGGAGGGGGAGGA
GGAGGAGGAGCAGGAGGGGGGGGAAAGCAGTTGTTGTTGTATTCGTTAAT
GGATTTGCAGCACCGGGACGATCTTCAGTTTGTGGTGTTGGGGGTGTCGG
CAGAGTGAGTGGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGAGGGGTGC
TGCATGTGTCTGTGTGCGTGAATATTTCAGTTTGTCATTGTTACATCATA
ACTTTACCCTCGACACGGGGAGGGAGAGGGAAGGAGGGAGTGAGGGAGGG
AGTTTGGAGGCATGGGTGTAGGCCGGGGACTGCCTGCGAGTATACATGTA
TGTGAGAGCCTTATTTCCTTTTGTTTCAGTACTTCCTTCTCACCCCCTCT
TATTGCCTCCATCCCTTTATTCATCTCGTCCTCATCTATGCAGGCTTGAT
GTGTTGGACCGTTTCGAGAAACGCATCCGTTCACGTATTTCCAACAAACA
GATCTTCTTCCCCCCCGCCCAGCCACTCGCCTCCGTCATCCTCCCCATCT
TTGACCAGGCTCTCCACCTCCCCGACGACCCCCCCTCTTCCTACCCCTCT
CTCTCTCCCTCCTTCGATCACTCCTCCTCGGACATTGTGGAGGTACAGCG
ACGTTACGCTCGGGCATTTAATAACGCCTGGGCTGCCCTCCGTCCGTCCC
TTCCCCCCCTCCTCGAATGGCCCCAGAAACTGGGTCGCCCTTTGCGATGG
TTCACCACCTTGGCTTATCGTGCAGTGACTAACCTAGACTCAGAGACACC
GTTTCTGACTTTGGCTCATTTTAACGAAGCGTTAAAAATGCAGGCTCCGC
ATACCACGGCGGCGAGTAGGGGTGGATTCGCCACGTTGGCTAATTTGGAG
TTGCTGGTTGTGATTGCCATGAAGAGGTTAGTGGATCGGGGGAAAGAAAA
GTGTACGCTGGATATGATTTGGAAGGAATATGAGGCGTTCTTGAAGCAAG
AGCCCTTGCTGCCTTGTCGATATTCGAGACCGGTGTTGCACAAAGGGTTG
CTGAACGTATTGGCGTTGGGTCTTGCGTGCGTCTGTCACCGTGTCCCACC
AGGAGGGAAGTCCTATCTGGAGCAATGCCCCTTGCCACCAGACAAGGATT
TTGGGTCGTTGGATGCCGCGGACTTGGGGTCGGCGCCATTGTGCATCACT
TTCTACCCTCAGGATTTGCATGATTTCTTGGTGGCGCAGGAGCATGCGCT
GCCGACGTTGTTGACGCGATGGGGGAGTTCGTGGACGGAGTAG back to topCoding sequence (CDS) from alignment at scaffold_3:1311056..1313398- >mRNA_543 ID=mRNA_543|Name=jgi.p|Nanoce1779_2|668543|organism=Nannochloropsis oceanica|type=CDS|length=4833bp|location=Sequence derived from alignment at scaffold_3:1311056..1313398- (Nannochloropsis oceanica)
GCTTGATGTGTTGGACCGTTTCGAGAAACGCATCCGTTCACGTATTTCCA
ACAAACAGATCTTCTTCCCCCCCGCCCAGCCACTCGCCTCCGTCATCCTC
CCCATCTTTGACCAGGCTCTCCACCTCCCCGACGACCCCCCCTCTTCCTA
CCCCTCTCTCTCTCCCTCCTTCGATCACTCCTCCTCGGACATTGTGGAGG
TACAGCGACGTTACGCTCGGGCATTTAATAACGCCTGGGCTGCCCTCCGT
CCGTCCCTTCCCCCCCTCCTCGAATGGCCCCAGAAACTGGGTCGCCCTTT
GCGATGGTTCACCACCTTGGCTTATCGTGCAGTGACTAACCTAGACTCAG
AGACACCGTTTCTGACTTTGGCTCATTTTAACGAAGCGTTAAAAATGCAG
GCTCCGCATACCACGGCGGCGAGTAGGGGTGGATTCGCCACGTTGGCTAA
TTTGGAGTTGCTGGTTGTGATTGCCATGAAGAGGTTAGTGGATCGGGGGA
AAGAAAAGTGTACGCTGGATATGATTTGGAAGGAATATGAGGCGTTCTTG
AAGCAAGAGCCCTTGCTGCCTTGTCGATATTCGAGACCGGTGTTGCACAA
AGGGTTGCTGAACGTATTGGCGTTGGGTCTTGCGTGCGTCTGTCACCGTG
TCCCACCAGGAGGGAAGTCCTATCTGGAGCAATGCCCCTTGCCACCAGAC
AAGGATTTTGGGTCGTTGGATGCCGCGGACTTGGGGTCGGCGCCATTGTG
CATCACTTTCTACCCTCAGGATTTGCATGATTTCTTGGTGGCGCAGGAGC
ATGCGCTGCCGACGTTGTTGACGCGATGGGGGAGTTCGTGGACGGAGTAG
CCACTTCCTCATCCTCGTCCAACATTGACACCTTACAAGATATCCACGGC
ATGCCCTCTCTTCAAGCTGCCATAATCGCCGCCCGTGCCCTGCTCAAACG
TCGTCTCTCTCCCGGCTACCTCCCCCCTCCCTCCGACCCCGCCCCCCTCG
GTCTCGAAGCTCAGTCCTCCCAAATCCAAGAGTTATTAGTCAAAGCCTTG
GACAAACGAATGCACGAGCCTTTCTTATTGGTAGGATCGCGGGGAACGGG
GAAGAGTCTGTGTCTGGAGCACGCATTCGCGAGATTGAGAGAGCGGTATC
GCGTGCAGGGGAAACTACGGCCTTTTAGGGTGGTATATGTTAATGGTCGA
ATGGAGAGTACGGATGTGGGGGCAATCAGTGAAATTGCGGCGCAGCTGGA
GATGAGCAAGACGTTGGATACCTCGAAAAGGAGATCGACAGGGGGCAGCG
CGGCAGGAGGGAGGGGGGGAGGGAGGGGGGCGAGGAATCAGCTGGATTTT
GTGGTGGAGGGGATGAGGAGTGGCACGTTTGAGGAGACGCCGTTGGTGTT
TGTTATCGACAATATTGAGGAATTTGCGCGGCGAGGGGGAAGAGGAGGGG
GAGGAGGAGGAGGAGCAGGAGGGGGGGGAAAGCAGTTGTTGTTGTATTCG
TTAATGGATTTGCAGCACCGGGACGATCTTCAGTTTGTGGTGTTGGGGGT
GTCGGCAGAATGGAGCCTCCCGCTGACCTCTCTCCATCGGCTCGGAAGCG
ACCACGGACATGCTTGATGTGTTGGACCGTTTCGAGAAACGCATCCGTTC
ACGTATTTCCAACAAACAGATCTTCTTCCCCCCCGCCCAGCCACTCGCCT
CCGTCATCCTCCCCATCTTTGACCAGGCTCTCCACCTCCCCGACGACCCC
CCCTCTTCCTACCCCTCTCTCTCTCCCTCCTTCGATCACTCCTCCTCGGA
CATTGTGGAGGTACAGCGACGTTACGCTCGGGCATTTAATAACGCCTGGG
CTGCCCTCCGTCCGTCCCTTCCCCCCCTCCTCGAATGGCCCCAGAAACTG
GGTCGCCCTTTGCGATGGTTCACCACCTTGGCTTATCGTGCAGTGACTAA
CCTAGACTCAGAGACACCGTTTCTGACTTTGGCTCATTTTAACGAAGCGT
TAAAAATGCAGGCTCCGCATACCACGGCGGCGAGTAGGGGTGGATTCGCC
ACGTTGGCTAATTTGGAGTTGCTGGTTGTGATTGCCATGAAGAGGTTAGT
GGATCGGGGGAAAGAAAAGTGTACGCTGGATATGATTTGGAAGGAATATG
AGGCGTTCTTGAAGCAAGAGCCCTTGCTGCCTTGTCGATATTCGAGACCG
GTGTTGCACAAAGGGTTGCTGAACGTATTGGCGTTGGGTCTTGCGTGCGT
CTGTCACCGTGTCCCACCAGGAGGGAAGTCCTATCTGGAGCAATGCCCCT
TGCCACCAGACAAGGATTTTGGGTCGTTGGATGCCGCGGACTTGGGGTCG
GCGCCATTGTGCATCACTTTCTACCCTCAGGATTTGCATGATTTCTTGGT
GGCGCAGGAGCATGCGCTGCCGACGTTGTTGACGCGATGGGGGAGTTCGT
GGACGGAGTAGCCACTTCCTCATCCTCGTCCAACATTGACACCTTACAAG
ATATCCACGGCATGCCCTCTCTTCAAGCTGCCATAATCGCCGCCCGTGCC
CTGCTCAAACGTCGTCTCTCTCCCGGCTACCTCCCCCCTCCCTCCGACCC
CGCCCCCCTCGGTCTCGAAGCTCAGTCCTCCCAAATCCAAGAGTTATTAG
TCAAAGCCTTGGACAAACGAATGCACGAGCCTTTCTTATTGGTAGGATCG
CGGGGAACGGGGAAGAGTCTGTGTCTGGAGCACGCATTCGCGAGATTGAG
AGAGCGGTATCGCGTGCAGGGGAAACTACGGCCTTTTAGGGTGGTATATG
TTAATGGTCGAATGGAGAGTACGGATGTGGGGGCAATCAGTGAAATTGCG
GCGCAGCTGGAGATGAGCAAGACGTTGGATACCTCGAAAAGGAGATCGAC
AGGGGGCAGCGCGGCAGGAGGGAGGGGGGGAGGGAGGGGGGCGAGGAATC
AGCTGGATTTTGTGGTGGAGGGGATGAGGAGTGGCACGTTTGAGGAGACG
CCGTTGGTGTTTGTTATCGACAATATTGAGGAATTTGCGCGGCGAGGGGG
AAGAGGAGGGGGAGGAGGAGGAGGAGCAGGAGGGGGGGGAAAGCAGTTGT
TGTTGTATTCGTTAATGGATTTGCAGCACCGGGACGATCTTCAGTTTGTG
GTGTTGGGGGTGTCGGCAGAATGGAGCCTCCCGCTGACCTCTCTCCATCG
GCTCGGAAGCGACCACGGACATGCTTGATGTGTTGGACCGTTTCGAGAAA
CGCATCCGTTCACGTATTTCCAACAAACAGATCTTCTTCCCCCCCGCCCA
GCCACTCGCCTCCGTCATCCTCCCCATCTTTGACCAGGCTCTCCACCTCC
CCGACGACCCCCCCTCTTCCTACCCCTCTCTCTCTCCCTCCTTCGATCAC
TCCTCCTCGGACATTGTGGAGGTACAGCGACGTTACGCTCGGGCATTTAA
TAACGCCTGGGCTGCCCTCCGTCCGTCCCTTCCCCCCCTCCTCGAATGGC
CCCAGAAACTGGGTCGCCCTTTGCGATGGTTCACCACCTTGGCTTATCGT
GCAGTGACTAACCTAGACTCAGAGACACCGTTTCTGACTTTGGCTCATTT
TAACGAAGCGTTAAAAATGCAGGCTCCGCATACCACGGCGGCGAGTAGGG
GTGGATTCGCCACGTTGGCTAATTTGGAGTTGCTGGTTGTGATTGCCATG
AAGAGGTTAGTGGATCGGGGGAAAGAAAAGTGTACGCTGGATATGATTTG
GAAGGAATATGAGGCGTTCTTGAAGCAAGAGCCCTTGCTGCCTTGTCGAT
ATTCGAGACCGGTGTTGCACAAAGGGTTGCTGAACGTATTGGCGTTGGGT
CTTGCGTGCGTCTGTCACCGTGTCCCACCAGGAGGGAAGTCCTATCTGGA
GCAATGCCCCTTGCCACCAGACAAGGATTTTGGGTCGTTGGATGCCGCGG
ACTTGGGGTCGGCGCCATTGTGCATCACTTTCTACCCTCAGGATTTGCAT
GATTTCTTGGTGGCGCAGGAGCATGCGCTGCCGACGTTGTTGACGCGATG
GGGGAGTTCGTGGACGGAGTAGCCACTTCCTCATCCTCGTCCAACATTGA
CACCTTACAAGATATCCACGGCATGCCCTCTCTTCAAGCTGCCATAATCG
CCGCCCGTGCCCTGCTCAAACGTCGTCTCTCTCCCGGCTACCTCCCCCCT
CCCTCCGACCCCGCCCCCCTCGGTCTCGAAGCTCAGTCCTCCCAAATCCA
AGAGTTATTAGTCAAAGCCTTGGACAAACGAATGCACGAGCCTTTCTTAT
TGGTAGGATCGCGGGGAACGGGGAAGAGTCTGTGTCTGGAGCACGCATTC
GCGAGATTGAGAGAGCGGTATCGCGTGCAGGGGAAACTACGGCCTTTTAG
GGTGGTATATGTTAATGGTCGAATGGAGAGTACGGATGTGGGGGCAATCA
GTGAAATTGCGGCGCAGCTGGAGATGAGCAAGACGTTGGATACCTCGAAA
AGGAGATCGACAGGGGGCAGCGCGGCAGGAGGGAGGGGGGGAGGGAGGGG
GGCGAGGAATCAGCTGGATTTTGTGGTGGAGGGGATGAGGAGTGGCACGT
TTGAGGAGACGCCGTTGGTGTTTGTTATCGACAATATTGAGGAATTTGCG
CGGCGAGGGGGAAGAGGAGGGGGAGGAGGAGGAGGAGCAGGAGGGGGGGG
AAAGCAGTTGTTGTTGTATTCGTTAATGGATTTGCAGCACCGGGACGATC
TTCAGTTTGTGGTGTTGGGGGTGTCGGCAGAATGGAGCCTCCCGCTGACC
TCTCTCCATCGGCTCGGAAGCGACCACGGACAT back to top
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