jgi.p|Nanoce1779_2|592492, mRNA_5429 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592492
Unique Name	mRNA_5429
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2308
Alignment location	scaffold_13:410417..412724 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592578
Track	FilteredModels2
ProteinId	592492

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:410417..412724 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592492	gene_5429	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592492	mRNA_5429-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5429	CDS_5429	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:410417..412724+
coding sequence from alignment at scaffold_13:410417..412724+

mRNA sequence

>mRNA_5429 ID=mRNA_5429|Name=jgi.p|Nanoce1779_2|592492|organism=Nannochloropsis oceanica|type=mRNA|length=2308bp
GCTGTTGATGCATGTAGGACGAATGGGAGTAGGGCTGGTGCTGGGGATGC
AGCCGATGGGTGTGCTGCTGCTGCTGCTGCTGCTGGAGTTGATGATGGAC
AGGGGCAGACAATGGATACTGCTGCTGCTGCTGCTGTTGGTGCTGAGGGA
AGTGTTGATGGTGGGAAAAGCGCTGTGGGTGAGGGACGACCACTGCAAAA
GGCCGCGGGGACGGAGGAGGGGGCACGACTTTCTTAGGCGCTGCATGGGG
AGGGGGGACCAAATCAGTCGGACCCGGAGGGAAGGGTGCTCGAAGGGGGG
GATAAGGCACTGCTGCCGCTGCTGGTGTTCCTCCTCTTCCTCCTCCTCCA
ACTCCTCCTGCTGCCACATCTATCGGGGACAAGGCTGAAGTCTCAATAGC
TGGCTTTGGCCTTCCTGTTCTCATATTCCTGACCGAAGCTCCTACTGATG
TTGCGGATGCTGCTGATGCTTCGGATTCTATCGACCCTGTCGACGGCGTG
GGGTAAGAGGCAGAAGAAGCGGCAGAGGGAGACCAGGCCTCACTCTTCCG
GGCTGGACAATTGAGCCATTGAGAGATAAGTCTAGACATGATGGTCAAGC
GAGCCTCCTCTTCAAGGTACTTTCCGGTGAGAAGAGCGTGAAGCGGGGCA
ATAGGCGTGAGGATAAAGGCACTTTCGGCTATGTCCAAGACTAGGGCGGC
GTTGCAGGTCGTGTCTTTGTTGTACCGGACGATGCCTGCCACGACTGTTT
GCGTCTTGGAAGGCACGCCGGAGATGCGGAGTAGCTGTCCCATGAAGAGG
TTTGTGTGGGGTTGGCCTTTTAGTCCGGCACCGTGGAAGTAAGTCCAGTT
CCCGGCAGATATTCCTTCGCGGGAGCAGCCGGCTTGCATGAAGTAGGCGT
ACGAGGGAGGTGGCGGAGGAGGAAGAGTAGGAGAGGATGAAGATGAGGAT
GAGGCCATGAACTGGGGTTGCTGTTTAAGGTGAGAGGAGGGATGAGGGGA
TGTGGCATCGCCTGTCGTCTTCTGATCTGGCAGCGGAAGAGACAGCGAGG
AAGAGGGTGAGGGGGAGGAAGAGGGAGGGGAAGAGAAAGACGACGAAGAA
TGAAGTGGCATAGGAATCGACGGCTTGTGCAGCGCCATCGACATGTTAAC
ATGAGAGGACTGATGCGTATCTGCCGTCGTCGAGGGAAGAGGAGAAGGGG
AGGACTGGCCGGTGGCCGAACTGTTGTGGATTACGGCAGGTGCTTGAGCG
GCTGTGTTTAGCAGCACCGAGGAATGATGCGGCGTTTCGTGGCGGGAGGG
AATAGGTAACAGGGGGCTGGCTTTCTTCTTGGTCTTTCTGGGCGACACGA
TGGAGGAGGGAGAAGATGAGTCAGAGGAGATGGACCCGGGCATGGGCGTG
GCTTTTCGTTGCGGTGCTGTGGCCTTGGCCTTACTGGAGAAATCCAAAAG
AATGGATATGAGTTCCAAGTCGCTCGGGTTGCCGGAAACCTTCGGCCTGG
GGGATGTGCCGGCACCAGTAACTGCACCGGCCGAGACTACTGCAACATCC
GCGACGGCAGACTGCTGCTGCTGCTGCTGCTCATCTCCCTGCTCACTTTC
AGGGTGCATCCCACTGCCGACAGTGGTGGTGTCAACACAGCTCTCGGCAG
ACGAAGTGGAGTAGGACGAAGGCGAATTGGGCGCGGGACGAGAATAGCCC
TGTCCCACTACAAACATGTGTTCATCGTCTTGCTGCGCCGCCGCCGCTGC
CGCAGTCTCCGTCTTGCGCCGTTGCCGACGCTCCTCCGTTTTCTCCGAAT
CATCGCCAGCTGCACAACTTTTCCCCCTGCTGCTGCAAATGGCCTTGGAC
GAGGCCACCGTGGGGGGCAGCAACAGACCTGTTCGGCGGCTAGTCAGAGT
GCGCCCGACGAACAGGGAAACCCATTCAGCAAAGGCCACCAGGTCAGTTT
CCCGATCTGCCGGCATGGCCTCCAGGCGTTGCCGGATGGTCTCCCGCATA
TCATGCAGGTATTCGGGAGGGAGCACAGATGGCGGCAGCAAAGTCGACGT
GCCATAGGTAATGGGCTTGCTGCTGCTGGAACTGCTTCGTTTCGAGGAGA
CGGATGAGGACGAGGAGGGGGAGGAGGCATACGACGATGCTGGACGGAAG
GAGGAGGCGCTCCTGGGCGAAATCGGATGGTGGCTCTTGCTAGCACTGCT
AGTGGTGATGATGCGAGGGTCTCCTACGCCCTGTATCTTTTTGTCCTCGG
TTCCTGCCGCACCGGTGACATAATCGAGTGTGGTCATCGGGCAGAGCAGC
TGCTGCTG

protein sequence of jgi.p|Nanoce1779_2|592492

>mRNA_5429-protein ID=mRNA_5429-protein|Name=jgi.p|Nanoce1779_2|592492|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MHVGRMGVGLVLGMQPMGVLLLLLLLELMMDRGRQWILLLLLLLVLREVL
MVGKALWVRDDHCKRPRGRRRGHDFLRRCMGRGDQISRTRREGCSKGGIR
HCCRCWCSSSSSSSNSSCCHIYRGQG*

mRNA from alignment at scaffold_13:410417..412724+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5429 ID=mRNA_5429|Name=jgi.p|Nanoce1779_2|592492|organism=Nannochloropsis oceanica|type=mRNA|length=2308bp|location=Sequence derived from alignment at scaffold_13:410417..412724+ (Nannochloropsis oceanica)
GCTGTTGATGCATGTAGGACGAATGGGAGTAGGGCTGGTGCTGGGGATGC
AGCCGATGGGTGTGCTGCTGCTGCTGCTGCTGCTGGAGTTGATGATGGAC
AGGGGCAGACAATGGATACTGCTGCTGCTGCTGCTGTTGGTGCTGAGGGA
AGTGTTGATGGTGGGAAAAGCGCTGTGGGTGAGGGACGACCACTGCAAAA
GGCCGCGGGGACGGAGGAGGGGGCACGACTTTCTTAGGCGCTGCATGGGG
AGGGGGGACCAAATCAGTCGGACCCGGAGGGAAGGGTGCTCGAAGGGGGG
GATAAGGCACTGCTGCCGCTGCTGGTGTTCCTCCTCTTCCTCCTCCTCCA
ACTCCTCCTGCTGCCACATCTATCGGGGACAAGGCTGAAGTCTCAATAGC
TGGCTTTGGCCTTCCTGTTCTCATATTCCTGACCGAAGCTCCTACTGATG
TTGCGGATGCTGCTGATGCTTCGGATTCTATCGACCCTGTCGACGGCGTG
GGGTAAGAGGCAGAAGAAGCGGCAGAGGGAGACCAGGCCTCACTCTTCCG
GGCTGGACAATTGAGCCATTGAGAGATAAGTCTAGACATGATGGTCAAGC
GAGCCTCCTCTTCAAGGTACTTTCCGGTGAGAAGAGCGTGAAGCGGGGCA
ATAGGCGTGAGGATAAAGGCACTTTCGGCTATGTCCAAGACTAGGGCGGC
GTTGCAGGTCGTGTCTTTGTTGTACCGGACGATGCCTGCCACGACTGTTT
GCGTCTTGGAAGGCACGCCGGAGATGCGGAGTAGCTGTCCCATGAAGAGG
TTTGTGTGGGGTTGGCCTTTTAGTCCGGCACCGTGGAAGTAAGTCCAGTT
CCCGGCAGATATTCCTTCGCGGGAGCAGCCGGCTTGCATGAAGTAGGCGT
ACGAGGGAGGTGGCGGAGGAGGAAGAGTAGGAGAGGATGAAGATGAGGAT
GAGGCCATGAACTGGGGTTGCTGTTTAAGGTGAGAGGAGGGATGAGGGGA
TGTGGCATCGCCTGTCGTCTTCTGATCTGGCAGCGGAAGAGACAGCGAGG
AAGAGGGTGAGGGGGAGGAAGAGGGAGGGGAAGAGAAAGACGACGAAGAA
TGAAGTGGCATAGGAATCGACGGCTTGTGCAGCGCCATCGACATGTTAAC
ATGAGAGGACTGATGCGTATCTGCCGTCGTCGAGGGAAGAGGAGAAGGGG
AGGACTGGCCGGTGGCCGAACTGTTGTGGATTACGGCAGGTGCTTGAGCG
GCTGTGTTTAGCAGCACCGAGGAATGATGCGGCGTTTCGTGGCGGGAGGG
AATAGGTAACAGGGGGCTGGCTTTCTTCTTGGTCTTTCTGGGCGACACGA
TGGAGGAGGGAGAAGATGAGTCAGAGGAGATGGACCCGGGCATGGGCGTG
GCTTTTCGTTGCGGTGCTGTGGCCTTGGCCTTACTGGAGAAATCCAAAAG
AATGGATATGAGTTCCAAGTCGCTCGGGTTGCCGGAAACCTTCGGCCTGG
GGGATGTGCCGGCACCAGTAACTGCACCGGCCGAGACTACTGCAACATCC
GCGACGGCAGACTGCTGCTGCTGCTGCTGCTCATCTCCCTGCTCACTTTC
AGGGTGCATCCCACTGCCGACAGTGGTGGTGTCAACACAGCTCTCGGCAG
ACGAAGTGGAGTAGGACGAAGGCGAATTGGGCGCGGGACGAGAATAGCCC
TGTCCCACTACAAACATGTGTTCATCGTCTTGCTGCGCCGCCGCCGCTGC
CGCAGTCTCCGTCTTGCGCCGTTGCCGACGCTCCTCCGTTTTCTCCGAAT
CATCGCCAGCTGCACAACTTTTCCCCCTGCTGCTGCAAATGGCCTTGGAC
GAGGCCACCGTGGGGGGCAGCAACAGACCTGTTCGGCGGCTAGTCAGAGT
GCGCCCGACGAACAGGGAAACCCATTCAGCAAAGGCCACCAGGTCAGTTT
CCCGATCTGCCGGCATGGCCTCCAGGCGTTGCCGGATGGTCTCCCGCATA
TCATGCAGGTATTCGGGAGGGAGCACAGATGGCGGCAGCAAAGTCGACGT
GCCATAGGTAATGGGCTTGCTGCTGCTGGAACTGCTTCGTTTCGAGGAGA
CGGATGAGGACGAGGAGGGGGAGGAGGCATACGACGATGCTGGACGGAAG
GAGGAGGCGCTCCTGGGCGAAATCGGATGGTGGCTCTTGCTAGCACTGCT
AGTGGTGATGATGCGAGGGTCTCCTACGCCCTGTATCTTTTTGTCCTCGG
TTCCTGCCGCACCGGTGACATAATCGAGTGTGGTCATCGGGCAGAGCAGC
TGCTGCTG

Coding sequence (CDS) from alignment at scaffold_13:410417..412724+

>mRNA_5429 ID=mRNA_5429|Name=jgi.p|Nanoce1779_2|592492|organism=Nannochloropsis oceanica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_13:410417..412724+ (Nannochloropsis oceanica)
ATGCATGTAGGACGAATGGGAGTAGGGCTGGTGCTGGGGATGCAGCCGAT
GGGTGTGCTGCTGCTGCTGCTGCTGCTGGAGTTGATGATGGACAGGGGCA
GACAATGGATACTGCTGCTGCTGCTGCTGTTGGTGCTGAGGGAAGTGTTG
ATGGTGGGAAAAGCGCTGTGGGTGAGGGACGACCACTGCAAAAGGCCGCG
GGGACGGAGGAGGGGGCACGACTTTCTTAGGCGCTGCATGGGGAGGGGGG
ACCAAATCAGTCGGACCCGGAGGGAAGGGTGCTCGAAGGGGGGGATAAGG
CACTGCTGCCGCTGCTGGTGTTCCTCCTCTTCCTCCTCCTCCAACTCCTC
CTGCTGCCACATCTATCGGGGACAAGGCTGA

Synonyms

Publications