jgi.p|Nanoce1779_2|592491, mRNA_5428 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592491
Unique NamemRNA_5428
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1299
Alignment locationscaffold_13:409223..410521 +

Link to JBrowse

Properties
Property NameValue
TranscriptId592577
TrackFilteredModels2
ProteinId592491
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:409223..410521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592491gene_5428Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592491mRNA_5428-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5428CDS_5428Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5428 ID=mRNA_5428|Name=jgi.p|Nanoce1779_2|592491|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp
TACCATGCCGAAGCCCAATTTTTGTGTCCTCATCCTTTCTTTTGACGGCA
GTAAATGATCTCGTATACGACTAGTGTTACAAGGAATTTTCGGTCCTTTT
TTTGTTCGCCTACTGGTCATGCTTTAGAACTTCCCTCTACTTTCTACCTG
CCTTCTTTCCTTTGAATATCCCCACGTGCACTCTTTCCAAAACCTATATC
CTCTCTCACGTTTAGTCCTTACTTTCGAATGCCTCTTGCCTTATCCTTTT
TTATTCACATATGTTCTATGAACTTATCTTTTCAAACGTCATTCGCCTTT
CTCTTCCAATTCAAACTACCCACCTTCCTATCTAATACTACCTGCCTGCC
TACCGACCCTAGTTATGAAGGTTTCTTGACGAACGTCCCTCCGTCATTTT
AGATGGAGACTGCGGGCAGCCATACAAAACCTCTGGCGCTCAGTTTGGAA
TTCTACAATTAAAAGAGGTACCTATGCAGCTGCCACCCGTCTACAATTTT
GATGGCCTACAAAAAGCCTTCTTGTTTGCCTCCTCCTTTATCTCTTCTTC
CTCCTCGAGCATCGTCTCTCATGTTGATGCATGCTTGAACATCCATTGAT
ATCAGTCAGAGTCAGAACCATGGTCGCTTTCTTCCGTTTGTCATGTGCAT
CGTGCTCTTCGATTTCCATCGCGCTTTCGGGTTTGTCAATGTACCCTCAC
GTTCCCCATAATCAATTTCCAGAGTCCATCTGTTTTCCCAGACACGTTTT
CGAATTCCCCTCGTATCGTATCCCTGATATCTTCGTCATATGACTGTTAC
GTTTCACGAATCATTCTCCTCTTCATCTTAATCTGAAGGCATCGTCGTGA
CAACCACAACCCCCAAAAGAGGAAATGACCTCTTTTTCTCCCTCACTTGT
CTGCCAAAACACTGCAATGGCTCCCACTCACATTCTCACATATTTTAATG
AACACGACGAACATACATATACGTACCCCATCTCAACTTTTCTCATCTCC
ATTTACTTCCGAGTCTTTCGATTTGCGTTTTTACTTTGAGAAACCAGTTA
CCGCCCTCATTCTCACTACCACTATCAGTGTGAGACAGAATCTTACCTAG
ACCCTTCACAGCCTCGTTGGTTAAGCGCGCGCGAGAGGAGCGTGCTGCTG
CCGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGGAACACACTCTGCTGTT
GATGCATGTAGGACGAATGGGAGTAGGGCTGGTGCTGGGGATGCAGCCGA
TGGGTGTGCTGCTGCTGCTGCTGCTGCTGGAGTTGATGATGGACAGGGG
back to top

protein sequence of jgi.p|Nanoce1779_2|592491

>mRNA_5428-protein ID=mRNA_5428-protein|Name=jgi.p|Nanoce1779_2|592491|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MLEHPLISVRVRTMVAFFRLSCASCSSISIALSGLSMYPHVPHNQFPESI
CFPRHVFEFPSYRIPDIFVI*
back to top

mRNA from alignment at scaffold_13:409223..410521+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5428 ID=mRNA_5428|Name=jgi.p|Nanoce1779_2|592491|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp|location=Sequence derived from alignment at scaffold_13:409223..410521+ (Nannochloropsis oceanica)
TACCATGCCGAAGCCCAATTTTTGTGTCCTCATCCTTTCTTTTGACGGCA
GTAAATGATCTCGTATACGACTAGTGTTACAAGGAATTTTCGGTCCTTTT
TTTGTTCGCCTACTGGTCATGCTTTAGAACTTCCCTCTACTTTCTACCTG
CCTTCTTTCCTTTGAATATCCCCACGTGCACTCTTTCCAAAACCTATATC
CTCTCTCACGTTTAGTCCTTACTTTCGAATGCCTCTTGCCTTATCCTTTT
TTATTCACATATGTTCTATGAACTTATCTTTTCAAACGTCATTCGCCTTT
CTCTTCCAATTCAAACTACCCACCTTCCTATCTAATACTACCTGCCTGCC
TACCGACCCTAGTTATGAAGGTTTCTTGACGAACGTCCCTCCGTCATTTT
AGATGGAGACTGCGGGCAGCCATACAAAACCTCTGGCGCTCAGTTTGGAA
TTCTACAATTAAAAGAGGTACCTATGCAGCTGCCACCCGTCTACAATTTT
GATGGCCTACAAAAAGCCTTCTTGTTTGCCTCCTCCTTTATCTCTTCTTC
CTCCTCGAGCATCGTCTCTCATGTTGATGCATGCTTGAACATCCATTGAT
ATCAGTCAGAGTCAGAACCATGGTCGCTTTCTTCCGTTTGTCATGTGCAT
CGTGCTCTTCGATTTCCATCGCGCTTTCGGGTTTGTCAATGTACCCTCAC
GTTCCCCATAATCAATTTCCAGAGTCCATCTGTTTTCCCAGACACGTTTT
CGAATTCCCCTCGTATCGTATCCCTGATATCTTCGTCATATGACTGTTAC
GTTTCACGAATCATTCTCCTCTTCATCTTAATCTGAAGGCATCGTCGTGA
CAACCACAACCCCCAAAAGAGGAAATGACCTCTTTTTCTCCCTCACTTGT
CTGCCAAAACACTGCAATGGCTCCCACTCACATTCTCACATATTTTAATG
AACACGACGAACATACATATACGTACCCCATCTCAACTTTTCTCATCTCC
ATTTACTTCCGAGTCTTTCGATTTGCGTTTTTACTTTGAGAAACCAGTTA
CCGCCCTCATTCTCACTACCACTATCAGTGTGAGACAGAATCTTACCTAG
ACCCTTCACAGCCTCGTTGGTTAAGCGCGCGCGAGAGGAGCGTGCTGCTG
CCGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGGAACACACTCTGCTGTT
GATGCATGTAGGACGAATGGGAGTAGGGCTGGTGCTGGGGATGCAGCCGA
TGGGTGTGCTGCTGCTGCTGCTGCTGCTGGAGTTGATGATGGACAGGGG
back to top

Coding sequence (CDS) from alignment at scaffold_13:409223..410521+

>mRNA_5428 ID=mRNA_5428|Name=jgi.p|Nanoce1779_2|592491|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at scaffold_13:409223..410521+ (Nannochloropsis oceanica)
ATGCTTGAACATCCATTGATATCAGTCAGAGTCAGAACCATGGTCGCTTT
CTTCCGTTTGTCATGTGCATCGTGCTCTTCGATTTCCATCGCGCTTTCGG
GTTTGTCAATGTACCCTCACGTTCCCCATAATCAATTTCCAGAGTCCATC
TGTTTTCCCAGACACGTTTTCGAATTCCCCTCGTATCGTATCCCTGATAT
CTTCGTCATATGA
back to top
Synonyms
Publications