jgi.p|Nanoce1779_2|592475, mRNA_5427 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592475
Unique NamemRNA_5427
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2128
Alignment locationscaffold_13:406649..409222 -

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Properties
Property NameValue
TranscriptId592561
TrackFilteredModels2
ProteinId592475
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:406649..409222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592475gene_5427Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592475mRNA_5427-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5427CDS_5427Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5427 ID=mRNA_5427|Name=jgi.p|Nanoce1779_2|592475|organism=Nannochloropsis oceanica|type=mRNA|length=2128bp
AGGGGGAAGGATTTTTTCATGTTTCGGTGTCCGTTGATTTCTGTTCTTGT
CGGTCGTGCTGTGTTTTTAGTTCATGTCATGATATCAATCTTTCAGGTCT
TGAATCTATGCTTCTAATGTATCACAAGTTGTGTCTATGTACAGGGGCGT
TGACCCGTCTATCTCACTCTTTATTATTCTATCGCCGTTTTTTCTCTCTG
CCTCTCTCTTTCTTTCTCTCTGTTTTTTTTTTCTCAAAGGAAGCTTCTTC
CTTATAGAATCTTCGAGCTTAAAAAGAGGCTTCTTAAGACTTGCCTCTGA
TCCGCTGTTGCATACAAGTCGTCTTTCTCTTTTGCAGTACACAAAGCGCA
CAAAAGGAACACGCTCGTCTCGCTCTTTTCATTCCCATTCCATTTGTTTT
AACTGCCCAGTCTCATGTTCATCCTCCACATTTTGCGCACGAGAAAATCA
CTACTTATTCTACTTGACTCTCTCTTTTGAGCCTCTTAGTAGTCCCCAAC
CCTCTCTTCCTCTATGCCTCCCTCCTTCCACCTCTATCTTCGTCTCTGAC
GCGCAAAACCTCCTTGAGAGTCAATCCTCCCCTCCTCCACCCTCCTTCTC
TTCCTTCCTCCCTCCCTCACTCATTGAATCCCCTTGGCTCGAAGCTCTTC
CCGAAGACGTTGAAAGTAGGCTGGATTGGGGTCGCCATAGAAAGCAGGCC
CCCCCAACGTGCTCGTCTTCATGTGCACCCCAATCCACACAATCTGCCCG
TGCCTTCATGTCGTCACACTCGTCCCAATCGTGAACATCAGCTTTCGATT
AAAGCAACATCGAAGGATTAGAAGCGACGCCCACCCTTCTGGTGTGTCGG
GGAGGTACACCACGCGGGTCGTGCCCGGAAAGACAGCACCCGGGGAGGGA
TGGCCCATACTCGCTAATCAGATACCGGAGGGGAATTTGTACTAGATCAC
CAGCGACTCCTGCTGCACACCCAACAGTGGCATAGAGCCAGGCGAATATC
CAAAACAAAGCATCTGCCCATCAGACTGGTCCCCTGTTTTTTCCACAAAG
TGATGCGCACACGTAGGACCTGGCACTTAAGTCGTCGTCGAAGGAAATGA
GGCTTCCCCCGTCGTCGGTTTCCCAGCTCCAAATAAGGGGGGGAAGACGA
GAGGATGGACAAAGAAAGCGACGAAGGGCGCGCTTCTGGTTGTTGGTGGT
GTTGATTTGTTGCATGCTTGCGAAATCCACCTGGTACTCCTTTCCCGCTA
ACACATGGTAACTGACAGATGGAAGCTGCTGTTGCTATGCCGCCTCCACC
AGATCGTTCAAATCTGCACGAAGTGGTACCCAAGGTACGCGATTGTCCCC
TGCATACTTCCACTCAGCATTGTGCTGCTGTGCCTGCCCCGAAAAATGAG
CCTCGGCTGCTGTGAGATTAGCAGTAATGACAGCATCAAGAGCAGAAGCT
GCCGTCGTGCATGTCTGAGTCGTCTTCATGCGATTCCATTGTCTTGCGCT
CTCGGCAACATCTATTCTTACCTGACCTGGAGGAGGGAGGGAAAAGATGA
GGCGTCTGAGGAGCTTGTAAAGGCCCGAGAGTGCATTCCACAGCATCCAT
GGCAATAGATAAGATGTAGGCTTCGAGAATCTGGGTGGATGCTGGTAGTG
GACAAGGGATGTTCATAGCGCAAGAGGATAGCTCCGGTACGTGCCCTGCT
TTCCTGGTCTCGCAACACTGTCCTCAGACGCCTTCGACACGACAGGCGAC
CAAACCCTACGGGATGCTGCAGAAAAAAGTCACGTTTTCTTCTGTCACGG
GGTCAGATGGTGTGTCCTGTGGTGTGAGGCAGAGGAAAAAAGAAGGGTCG
GGCAAGCGTTCCCCTTCACTTTCCGACACTTGAAGCACCTCAGGCTGGCT
GGCCTCGCCGTCGCATTCGTTCGATCGATCTGCCTTCGATGTGATCATGC
CCATGCTATTGCTTTACATCTTTGCCACGGGCAGCACGTGCAGGACTCCG
CTATGGCTAGTTTTACTAACCATCCCCTTCATTTACCCAAACATAGGGAG
AGAGAAAGGAGAGAGACGCCTTCGCAGTAGGCACCTCCGGCTAAACCCTG
ATGGCGATGGCAGTGCAGCGACAACGAC
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protein sequence of jgi.p|Nanoce1779_2|592475

>mRNA_5427-protein ID=mRNA_5427-protein|Name=jgi.p|Nanoce1779_2|592475|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MYRGVDPSISLFIILSPFFLSASLFLSLCFFFLKGSFFLIESSSLKRGFL
RLASDPLLHTSRLSLLQYTKRTKGTRSSRSFHSHSICFNCPVSCSSSTFC
ARENHYLFYLTLSFEPLSSPQPSLPLCLPPSTSIFVSDAQNLLESQSSPP
PPSFSSFLPPSLIESPWLEALPEDVESRLDWGRHRKQAPPTCSSSCAPQS
TQSARAFMSSHSSQS*
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mRNA from alignment at scaffold_13:406649..409222-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5427 ID=mRNA_5427|Name=jgi.p|Nanoce1779_2|592475|organism=Nannochloropsis oceanica|type=mRNA|length=2574bp|location=Sequence derived from alignment at scaffold_13:406649..409222- (Nannochloropsis oceanica)
AGGGGGAAGGATTTTTTCATGTTTCGGTGTCCGTTGATTTCTGTTCTTGT
CGGTCGTGCTGTGTTTTTAGTTCATGTCATGATATCAATCTTTCAGGTCT
TGAATCTATGCTTCTAATGTATCACAAGTTGTGTCTATGTACAGGGGCGT
TGACCCGTCTATCTCACTCTTTATTATTCTATCGCCGTTTTTTCTCTCTG
CCTCTCTCTTTCTTTCTCTCTGTTTTTTTTTTCTCAAAGGAAGCTTCTTC
CTTATAGAATCTTCGAGCTTAAAAAGAGGCTTCTTAAGACTTGCCTCTGA
TCCGCTGTTGCATACAAGTCGTCTTTCTCTTTTGCAGTACACAAAGCGCA
CAAAAGGAACACGCTCGTCTCGCTCTTTTCATTCCCATTCCATTTGTTTT
AACTGCCCAGTCTCATGTTCATCCTCCACATTTTGCGCACGAGAAAATCA
CTACTTATTCTACTTGACTCTCTCTTTTGAGCCTCTTAGTAGTCCCCAAC
CCTCTCTTCCTCTATGCCTCCCTCCTTCCACCTCTATCTTCGTCTCTGAC
GCGCAAAACCTCCTTGAGAGTCAATCCTCCCCTCCTCCACCCTCCTTCTC
TTCCTTCCTCCCTCCCTCACTCATTGAATCCCCTTGGCTCGAAGCTCTTC
CCGAAGACGTTGAAAGTAGGCTGGATTGGGGTCGCCATAGCTGTCAATTT
TATTCAAGTGCATGTTTCATGTTTGTGAAAGAAATAGTGAATTTTCATTT
GTTAAATGAAGGAAGGAGATGGGAAACGAGATGAGAGAAAGATGGAGGGC
ATCTACGTGTCTACGAGGACCCCGAAATTTCGCGAGGAAATAAATGAGAG
TAAGACTTCAGTGACTTGAAGAAGTCACGGAAAGAGGTCAGGAGCGCGCC
ACCCAAACAAACACTTACAAAGCAGGCCCCCCCAACGTGCTCGTCTTCAT
GTGCACCCCAATCCACACAATCTGCCCGTGCCTTCATGTCGTCACACTCG
TCCCAATCGTGAACATCAGCTTTCGATTAAAGCAACATCGAAGGATTAGA
AGCGACGCCCACCCTTCTGGTGTGTCGGGGAGGTACACCACGCGGGTCGT
GCCCGGAAAGACAGCACCCGGGGAGGGATGGCCCATACTCGCTAATCAGA
TACCGGAGGGGAATTTGTACTGCGGGAGGGAGGGAGGGAGGAAGGATGAG
CCATGTATGAGTTTTCTCATTGCGTAGTACAATAATCGCTACAAGCTGCT
TTTAATCCTCCCTCCTATCCTCCCCCTTACCTAGATCACCAGCGACTCCT
GCTGCACACCCAACAGTGGCATAGAGCCAGGCGAATATCCAAAACAAAGC
ATCTGCCCATCAGACTGGTCCCCTGTTTTTTCCACAAAGTGATGCGCACA
CGTAGGACCTGGCACTTAAGTCGTCGTCGAAGGAAATGAGGCTTCCCCCG
TCGTCGGTTTCCCAGCTCCAAATAAGGGGGGGAAGACGAGAGGATGGACA
AAGAAAGCGACGAAGGGCGCGCTTCTGGTTGTTGGTGGTGTTGATTTGTT
GCATGCTTGCGAAATCCACCTAGGTTTAGGGAGAGGAGACCGTGAGTTGT
AACAGGGCGGTATGAGTGCTCTTGGAATAAAAGACACACACCTCCCTATC
TTCCAATCGCTCGCTTCGCCTCGTACCTGGTACTCCTTTCCCGCTAACAC
ATGGTAACTGACAGATGGAAGCTGCTGTTGCTATGCCGCCTCCACCAGAT
CGTTCAAATCTGCACGAAGTGGTACCCAAGGTACGCGATTGTCCCCTGCA
TACTTCCACTCAGCATTGTGCTGCTGTGCCTGCCCCGAAAAATGAGCCTC
GGCTGCTGTGAGATTAGCAGTAATGACAGCATCAAGAGCAGAAGCTGCCG
TCGTGCATGTCTGAGTCGTCTTCATGCGATTCCATTGTCTTGCGCTCTCG
GCAACATCTATTCTTACCTGACCTGGAGGAGGGAGGGAAAAGATGAGGCG
TCTGAGGAGCTTGTAAAGGCCCGAGAGTGCATTCCACAGCATCCATGGCA
ATAGATAAGATGTAGGCTTCGAGAATCTGGGTGGATGCTGGTAGTGGACA
AGGGATGTTCATAGCGCAAGAGGATAGCTCCGGTACGTGCCCTGCTTTCC
TGGTCTCGCAACACTGTCCTCAGACGCCTTCGACACGACAGGCGACCAAA
CCCTACGGGATGCTGCAGAAAAAAGTCACGTTTTCTTCTGTCACGGGGTC
AGATGGTGTGTCCTGTGGTGTGAGGCAGAGGAAAAAAGAAGGGTCGGGCA
AGCGTTCCCCTTCACTTTCCGACACTTGAAGCACCTCAGGCTGGCTGGCC
TCGCCGTCGCATTCGTTCGATCGATCTGCCTTCGATGTGATCATGCCCAT
GCTATTGCTTTACATCTTTGCCACGGGCAGCACGTGCAGGACTCCGCTAT
GGCTAGTTTTACTAACCATCCCCTTCATTTACCCAAACATAGGGAGAGAG
AAAGGAGAGAGACGCCTTCGCAGTAGGCACCTCCGGCTAAACCCTGATGG
CGATGGCAGTGCAGCGACAACGAC
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Coding sequence (CDS) from alignment at scaffold_13:406649..409222-

>mRNA_5427 ID=mRNA_5427|Name=jgi.p|Nanoce1779_2|592475|organism=Nannochloropsis oceanica|type=CDS|length=1296bp|location=Sequence derived from alignment at scaffold_13:406649..409222- (Nannochloropsis oceanica)
AAAGCAGGCCCCCCCAACGTGCTCGTCTTCATGTGCACCCCAATCCACAC
AATCTGCCCGTGCCTTCATGTCGTCACACTCGTCCCAATCGTGAATGTAC
AGGGGCGTTGACCCGTCTATCTCACTCTTTATTATTCTATCGCCGTTTTT
TCTCTCTGCCTCTCTCTTTCTTTCTCTCTGTTTTTTTTTTCTCAAAGGAA
GCTTCTTCCTTATAGAATCTTCGAGCTTAAAAAGAGGCTTCTTAAGACTT
GCCTCTGATCCGCTGTTGCATACAAGTCGTCTTTCTCTTTTGCAGTACAC
AAAGCGCACAAAAGGAACACGCTCGTCTCGCTCTTTTCATTCCCATTCCA
TTTGTTTTAACTGCCCAGTCTCATGTTCATCCTCCACATTTTGCGCACGA
GAAAATCACTACTTATTCTACTTGACTCTCTCTTTTGAGCCTCTTAGTAG
TCCCCAACCCTCTCTTCCTCTATGCCTCCCTCCTTCCACCTCTATCTTCG
TCTCTGACGCGCAAAACCTCCTTGAGAGTCAATCCTCCCCTCCTCCACCC
TCCTTCTCTTCCTTCCTCCCTCCCTCACTCATTGAATCCCCTTGGCTCGA
AGCTCTTCCCGAAGACGTTGAAAGTAGGCTGGATTGGGGTCGCCATAGAA
AGCAGGCCCCCCCAACGTGCTCGTCTTCATGTGCACCCCAATCCACACAA
TCTGCCCGTGCCTTCATGTCGTCACACTCGTCCCAATCGTGAATGTACAG
GGGCGTTGACCCGTCTATCTCACTCTTTATTATTCTATCGCCGTTTTTTC
TCTCTGCCTCTCTCTTTCTTTCTCTCTGTTTTTTTTTTCTCAAAGGAAGC
TTCTTCCTTATAGAATCTTCGAGCTTAAAAAGAGGCTTCTTAAGACTTGC
CTCTGATCCGCTGTTGCATACAAGTCGTCTTTCTCTTTTGCAGTACACAA
AGCGCACAAAAGGAACACGCTCGTCTCGCTCTTTTCATTCCCATTCCATT
TGTTTTAACTGCCCAGTCTCATGTTCATCCTCCACATTTTGCGCACGAGA
AAATCACTACTTATTCTACTTGACTCTCTCTTTTGAGCCTCTTAGTAGTC
CCCAACCCTCTCTTCCTCTATGCCTCCCTCCTTCCACCTCTATCTTCGTC
TCTGACGCGCAAAACCTCCTTGAGAGTCAATCCTCCCCTCCTCCACCCTC
CTTCTCTTCCTTCCTCCCTCCCTCACTCATTGAATCCCCTTGGCTCGAAG
CTCTTCCCGAAGACGTTGAAAGTAGGCTGGATTGGGGTCGCCATAG
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Synonyms
Publications