jgi.p|Nanoce1779_2|671486, mRNA_5424 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|671486
Unique Name	mRNA_5424
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1617
Alignment location	scaffold_13:400518..402281 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	671572
Track	FilteredModels2
ProteinId	671486

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:400518..402281 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671486	gene_5424	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671486	mRNA_5424-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5424	CDS_5424	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:400518..402281+
coding sequence from alignment at scaffold_13:400518..402281+

mRNA sequence

>mRNA_5424 ID=mRNA_5424|Name=jgi.p|Nanoce1779_2|671486|organism=Nannochloropsis oceanica|type=mRNA|length=1617bp
GTGGATGTCAGAGGATTGCCCATCTTGCTCATGCCCTCACACGAAGCCCT
AAGCCACACCACTCAGCCACACTGCAACGAACACGAGGACAGTCTTGGCA
TAGTCATGCTCAGCGCAGGTAGAAGGGGCTGATTTAACGGCCTTTGGTGC
GCTTGACTCGACCCAAGGAAGCGCCTGGAGACCCCCACCGCCCGTCATCA
CCGAGAACATAACATGACTCACCTGACGCCCGCCCCCTACTCTCACAACA
GAGGACGCGCTACATCTGCCAACCAACACGCTCACGACTGAGCCATGTCC
AAGTTCGTGACGGCTTCGGACAGAATAGCGGCTTTCAAGCGCATGAAGTG
CCGGCCTGAGAATCAGGTCTGCTTTGACTGCCCTACGCGCACCCCAACCT
GGGCTTCAGCGACCTACGGTGTTTTCATCTGCTATAATTGCTCGGCCACG
CACCGGGCATTGGGCGTGCATATCACTTTCGTCCGCTCCGTTGACTTGGA
CGAATGGACTCCTCAACAACTCCTGACTATGCGCCTGGGGGGGAACCAGA
AGGCTGCACAGTTCTTCCGCAAGCACGGCGTGACAAGCGGAGGAAAGGTG
GAATCGAAGTACTCATCCCGGGCAGCTGAGCTGTACAAGGTCCACTTGAG
CAAGCTCGTGGCCGACAAAATGCTATCGGATGCGAGTGCTCTTGAGCCCC
TCCCCGCCTCTGAGACAGCCGTGGCTGCCATTGGGTGTGGGTTGGACAAC
ATGATGCTGTCCTATCAACCGAACAAGGACCCCGCCATCGATCGTGAAGA
AGCTGCTGCCTCTCCTCCCGCTCAACAGCAAGAGCTCGAGCCGGTGGAAG
TGGTGGCACCGACGTCCCCTACCCCCGCTCATGCGCCCATGCTCCCTCCC
GCTCCTGTGATGATCAAGCAGGAACCTCGACCTGTCGGGAGGCTGAGCAC
CAATAGCAGCCCGCGAGATGCTTCTAATATTCTAGCCGTGGGTGCAGCGG
ACCTTCAAACGACGACAACTTTCGCGGCGACAGCAGCAGGGAACAGCAGC
GGCATGTTCCGGAATCCTCCGCGAAAGACGACGGCCGCCAAGAGCATGGG
TGCCCGTAAGCTGGGGGCGACGAAGGTGGGTGGCATTAGCAGCAAAAGTA
GCAGTGACTGTGGTATGGGTACATTTGAGGACACCGCCAAGCAGGCCGCG
GAGGCGAAGGCTGCAGCAGAGCAGGCGGCTAGGGATTATGAACAAGCGGA
GAGGGATCGAAAGGCAAGGGATTTGAACGTGTTCATGGGAAACTCATCTA
ATTCTGCAGGCGGAGGGAGGCAGGATTGGGCAGCCCCTTTGCCGGCTTCG
CCTGTGATCCAGGAGTATCGAGGGAGGATGGAGGGAGGAAAGCAGGAGCC
GGGGCCGACCGTATCGACGGGGCCATTAGCGGCTCGATTTAGTACAGCCA
AGGGGATTGGTTCGGATCAGTTGTTCGGTAATGATGACGAGACTCCGGAC
ATGCGATACGAGAGGCAGACGAAACTGGCGGGGATGAGTGGGGCGCGGGC
TATTAGTAGTGACATGTACTTTGGCGATGGGCAGGAAGGAGGAATGGGGG
GGGGGGGGGGGCTATAA

protein sequence of jgi.p|Nanoce1779_2|671486

>mRNA_5424-protein ID=mRNA_5424-protein|Name=jgi.p|Nanoce1779_2|671486|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MSKFVTASDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCS
ATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGG
KVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLPASETAVAAIGCGL
DNMMLSYQPNKDPAIDREEAAASPPAQQQELEPVEVVAPTSPTPAHAPML
PPAPVMIKQEPRPVGRLSTNSSPRDASNILAVGAADLQTTTTFAATAAGN
SSGMFRNPPRKTTAAKSMGARKLGATKVGGISSKSSSDCGMGTFEDTAKQ
AAEAKAAAEQAARDYEQAERDRKARDLNVFMGNSSNSAGGGRQDWAAPLP
ASPVIQEYRGRMEGGKQEPGPTVSTGPLAARFSTAKGIGSDQLFGNDDET
PDMRYERQTKLAGMSGARAISSDMYFGDGQEGGMGGGGGL*

mRNA from alignment at scaffold_13:400518..402281+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5424 ID=mRNA_5424|Name=jgi.p|Nanoce1779_2|671486|organism=Nannochloropsis oceanica|type=mRNA|length=1764bp|location=Sequence derived from alignment at scaffold_13:400518..402281+ (Nannochloropsis oceanica)
GTGGATGTCAGAGGATTGCCCATCTTGCTCATGCCCTCACACGAAGCCCT
AAGCCACACCACTCAGCCACACTGCAACGAACACGAGGACAGTCTTGGCA
TAGTCATGCTCAGCGCAGGTAGAAGGGGCTGATTTAACGGCCTTTGGTGC
GCTTGACTCGACCCAAGGAAGCGCCTGGAGACCCCCACCGCCCGTCATCA
CCGAGAACATAACATGACTCACCTGACGCCCGCCCCCTACTCTCACAACA
GAGGACGCGCTACATCTGCCAACCAACACGCTCACGACTGAGCCATGTCC
AAGTTCGTGACGGCTTCGGACAGAATAGCGGCTTTCAAGCGCATGAAGTG
CCGGCCTGAGAATCAGGTATGTGGTAGCAGTGAGATGATGGGAGATGTCG
AGGGCCGGGATGGGGGATGCACGCGTGGGCGTGTGCCTGGATCCTTCGAA
CCTAGACTGCTCCTTGTTTCGACACACTTATCAATCCGTATCATTCCCCG
GCTTCGGTCGTAGGTCTGCTTTGACTGCCCTACGCGCACCCCAACCTGGG
CTTCAGCGACCTACGGTGTTTTCATCTGCTATAATTGCTCGGCCACGCAC
CGGGCATTGGGCGTGCATATCACTTTCGTCCGCTCCGTTGACTTGGACGA
ATGGACTCCTCAACAACTCCTGACTATGCGCCTGGGGGGGAACCAGAAGG
CTGCACAGTTCTTCCGCAAGCACGGCGTGACAAGCGGAGGAAAGGTGGAA
TCGAAGTACTCATCCCGGGCAGCTGAGCTGTACAAGGTCCACTTGAGCAA
GCTCGTGGCCGACAAAATGCTATCGGATGCGAGTGCTCTTGAGCCCCTCC
CCGCCTCTGAGACAGCCGTGGCTGCCATTGGGTGTGGGTTGGACAACATG
ATGCTGTCCTATCAACCGAACAAGGACCCCGCCATCGATCGTGAAGAAGC
TGCTGCCTCTCCTCCCGCTCAACAGCAAGAGCTCGAGCCGGTGGAAGTGG
TGGCACCGACGTCCCCTACCCCCGCTCATGCGCCCATGCTCCCTCCCGCT
CCTGTGATGATCAAGCAGGAACCTCGACCTGTCGGGAGGCTGAGCACCAA
TAGCAGCCCGCGAGATGCTTCTAATATTCTAGCCGTGGGTGCAGCGGACC
TTCAAACGACGACAACTTTCGCGGCGACAGCAGCAGGGAACAGCAGCGGC
ATGTTCCGGAATCCTCCGCGAAAGACGACGGCCGCCAAGAGCATGGGTGC
CCGTAAGCTGGGGGCGACGAAGGTGGGTGGCATTAGCAGCAAAAGTAGCA
GTGACTGTGGTATGGGTACATTTGAGGACACCGCCAAGCAGGCCGCGGAG
GCGAAGGCTGCAGCAGAGCAGGCGGCTAGGGATTATGAACAAGCGGAGAG
GGATCGAAAGGCAAGGGATTTGAACGTGTTCATGGGAAACTCATCTAATT
CTGCAGGCGGAGGGAGGCAGGATTGGGCAGCCCCTTTGCCGGCTTCGCCT
GTGATCCAGGAGTATCGAGGGAGGATGGAGGGAGGAAAGCAGGAGCCGGG
GCCGACCGTATCGACGGGGCCATTAGCGGCTCGATTTAGTACAGCCAAGG
GGATTGGTTCGGATCAGTTGTTCGGTAATGATGACGAGACTCCGGACATG
CGATACGAGAGGCAGACGAAACTGGCGGGGATGAGTGGGGCGCGGGCTAT
TAGTAGTGACATGTACTTTGGCGATGGGCAGGAAGGAGGAATGGGGGGGG
GGGGGGGGCTATAA

Coding sequence (CDS) from alignment at scaffold_13:400518..402281+

>mRNA_5424 ID=mRNA_5424|Name=jgi.p|Nanoce1779_2|671486|organism=Nannochloropsis oceanica|type=CDS|length=2646bp|location=Sequence derived from alignment at scaffold_13:400518..402281+ (Nannochloropsis oceanica)
ATGTCCAAGTTCGTGACGGCTTCGGACAGAATAGCGGCTTTCAAGCGCAT
GAAGTGCCGGCCTGAGAATCAGGTCTGCTTTGACTGCCCTACGCGCACCC
CAACCTGGGCTTCAGCGACCTACGGTGTTTTCATCTGCTATAATTGCTCG
GCCACGCACCGGGCATTGGGCGTGCATATCACTTTCGTCCGCTCCGTTGA
CTTGGACGAATGGACTCCTCAACAACTCCTGACTATGCGCCTGGGGGGGA
ACCAGAAGGCTGCACAGTTCTTCCGCAAGCACGGCGTGACAAGCGGAGGA
AAGGTGGAATCGAAGTACTCATCCCGGGCAGCTGAGCTGTACAAGGTCCA
CTTGAGCAAGCTCGTGGCCGACAAAATGCTATCGGATGCGAGTGCTCTTG
AGCCCCTCCCCGCCTCTGAGACAGCCGTGGCTGCCATTGGGTGTGGGTTG
GACAACATGATGCTGTCCTATCAACCGAACAAGGACCCCGCCATCGATCG
TGAAGAAGCTGCTGCCTCTCCTCCCGCTCAACAGCAAGAGCTCGAGCCGG
TGGAAGTGGTGGCACCGACGTCCCCTACCCCCGCTCATGCGCCCATGCTC
CCTCCCGCTCCTGTGATGATCAAGCAGGAACCTCGACCTGTCGGGAGGCT
GAGCACCAATAGCAGCCCGCGAGATGCTTCTAATATTCTAGCCGTGGGTG
CAGCGGACCTTCAAACGACGACAACTTTCGCGGCGACAGCAGCAGGGAAC
AGCAGCGGCATGTTCCGGAATCCTCCGCGAAAGACGACGGCCGCCAAGAG
CATGGGTGCCCGTAAGCTGGGGGCGACGAAGGTGGGTGGCATTAGCAGCA
AAAGTAGCAGTGACTGTGGTATGGGTACATTTGAGGACACCGCCAAGCAG
GCCGCGGAGGCGAAGGCTGCAGCAGAGCAGGCGGCTAGGGATTATGAACA
AGCGGAGAGGGATCGAAAGGCAAGGGATTTGAACGTGTTCATGGGAAACT
CATCTAATTCTGCAGGCGGAGGGAGGCAGGATTGGGCAGCCCCTTTGCCG
GCTTCGCCTGTGATCCAGGAGTATCGAGGGAGGATGGAGGGAGGAAAGCA
GGAGCCGGGGCCGACCGTATCGACGGGGCCATTAGCGGCTCGATTTAGTA
CAGCCAAGGGGATTGGTTCGGATCAGTTGTTCGGTAATGATGACGAGACT
CCGGACATGCGATACGAGAGGCAGACGAAACTGGCGGGGATGAGTGGGGC
GCGGGCTATTAGTAGTGACATGTACTTTGGCGATGGGCAGGAAGGAGGAA
TGGGGGGGGGGGGGGGGCTATAAATGTCCAAGTTCGTGACGGCTTCGGAC
AGAATAGCGGCTTTCAAGCGCATGAAGTGCCGGCCTGAGAATCAGGTCTG
CTTTGACTGCCCTACGCGCACCCCAACCTGGGCTTCAGCGACCTACGGTG
TTTTCATCTGCTATAATTGCTCGGCCACGCACCGGGCATTGGGCGTGCAT
ATCACTTTCGTCCGCTCCGTTGACTTGGACGAATGGACTCCTCAACAACT
CCTGACTATGCGCCTGGGGGGGAACCAGAAGGCTGCACAGTTCTTCCGCA
AGCACGGCGTGACAAGCGGAGGAAAGGTGGAATCGAAGTACTCATCCCGG
GCAGCTGAGCTGTACAAGGTCCACTTGAGCAAGCTCGTGGCCGACAAAAT
GCTATCGGATGCGAGTGCTCTTGAGCCCCTCCCCGCCTCTGAGACAGCCG
TGGCTGCCATTGGGTGTGGGTTGGACAACATGATGCTGTCCTATCAACCG
AACAAGGACCCCGCCATCGATCGTGAAGAAGCTGCTGCCTCTCCTCCCGC
TCAACAGCAAGAGCTCGAGCCGGTGGAAGTGGTGGCACCGACGTCCCCTA
CCCCCGCTCATGCGCCCATGCTCCCTCCCGCTCCTGTGATGATCAAGCAG
GAACCTCGACCTGTCGGGAGGCTGAGCACCAATAGCAGCCCGCGAGATGC
TTCTAATATTCTAGCCGTGGGTGCAGCGGACCTTCAAACGACGACAACTT
TCGCGGCGACAGCAGCAGGGAACAGCAGCGGCATGTTCCGGAATCCTCCG
CGAAAGACGACGGCCGCCAAGAGCATGGGTGCCCGTAAGCTGGGGGCGAC
GAAGGTGGGTGGCATTAGCAGCAAAAGTAGCAGTGACTGTGGTATGGGTA
CATTTGAGGACACCGCCAAGCAGGCCGCGGAGGCGAAGGCTGCAGCAGAG
CAGGCGGCTAGGGATTATGAACAAGCGGAGAGGGATCGAAAGGCAAGGGA
TTTGAACGTGTTCATGGGAAACTCATCTAATTCTGCAGGCGGAGGGAGGC
AGGATTGGGCAGCCCCTTTGCCGGCTTCGCCTGTGATCCAGGAGTATCGA
GGGAGGATGGAGGGAGGAAAGCAGGAGCCGGGGCCGACCGTATCGACGGG
GCCATTAGCGGCTCGATTTAGTACAGCCAAGGGGATTGGTTCGGATCAGT
TGTTCGGTAATGATGACGAGACTCCGGACATGCGATACGAGAGGCAGACG
AAACTGGCGGGGATGAGTGGGGCGCGGGCTATTAGTAGTGACATGTACTT
TGGCGATGGGCAGGAAGGAGGAATGGGGGGGGGGGGGGGGCTATAA

Synonyms

Publications