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Properties
Property Name | Value |
TranscriptId | 543180 |
Track | FilteredModels2 |
ProteinId | 543094 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_13 | supercontig | scaffold_13:390985..392690 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5421 ID=mRNA_5421|Name=jgi.p|Nanoce1779_2|543094|organism=Nannochloropsis oceanica|type=mRNA|length=1706bp AGGCGGCGCGGAGAAAGAGCCGTCGGCTTGTGTATCTGTGCGGGTTCTGT GCCTCGCTAACAAGTATTTTGCTTGGCTACGACGTGGGCGTCATGTCTGT CGCACGTAAGTATGTGGACAGGCAACTCTCGCTCACCAGCGTGCAAAGCG AGATAGTGATGGGATCCTTGAACCTTGTGGCGGCGTTTGGAGGCCTGATT GCAGGCAAGGCAGCGGATAAATTCGGACGGAACCGCGCGATTGCATTGGC GTGCCTCATCTTTGTGACAGGGAGTGCTTGCATGACAATGGCCTGGAATT TTCGGATGTTGCTTGTAGGGCGAATCGTGACAGGTTTGGGGGTGGGATGT GGTTTTGTCATTGCCCCGGTGTACATTGCTGAGATCACGCCACCGGATAT CAGGGGAAGGATGGTGTCATTGACGGATGTTTGCATCAATATTGGGATTG TCCTTGGCTCCGTAGTGGGATTTTTGTGTCAGCAGACGATTAGGTCGGAT GATGCCAAGTGGCGGGTTATGCTCGGAATAGGCATTATCCCTCCCATTGT CATTTTGCTGTTTCTGAGGGTTTTGCCCGAGTCCCCCCGGTGGCTCCTGC TACAAGGCCGCGTCCCTGAAGCCCGGCACGTCCTAAGAAAGATCACTGGA CTGGACCAGGAGGCTGAGCGCGAGGTTGTGGCCATCGAGGAGGCGATTCA AATGGAACGAGACGTCACCACGGATTGGTCTGAGGTCCTCTGTCCCCGTC ATCGCGCAATCCTCCTCCCCGTCCTCATGGGTCTCGGCCTTGGCTTCTTC CAGCAGGCCTCCGGGTCCGAAGCCGCCGTGTATTATTCCCCCAAAATCCT CGCGGAGGCCGGCGTGTCGGGCACAGCCCAACAGTCTATCGGGAATATTG CGATTTGTACGTTTAAATTTGTGGGGGAGATAATAGCGATGCTCTCTATG GATAGGGTGGGGCGTAAACCCTTGTTTGTCCTCTCGGCCTTGGGCTCTGG CTGCTTCCTCGTCGTGGCGGGCGCCTGTTTCCAATTTCGACTCCCTCCGT TCTTGCTTGCCTCGAGCCTGTGTTTGTTTATGGGGTTCTTCTCGGTGGGG ATGGGCGCCATCACCTTTGTGGTTGCAAGCGAGATATTCCCGTTGCCTGT CCGAGGGAAGGCCATGGCGTTGGCTGTGTTTATAAACCGGCTGTTGAGTG GGGTGGTGGCGTTGACGTTTTTGAGTCTGGTGGACGCGGTGACGTACGCA AAGACCTTTTATTTGTTTGCGGCGTTTTCGTTTCTGTCCACGGTGTTTTA TGGGTGCTTTTTGCCAGAGACGAAAGGGAAGAGCTTGGAAGACATATCGA TTTTGTTCGAGAAGGAGAGTGCAGAATACGAGGCGCATGCCCACCCTCAA GACCAGCAGCAGCGGCGTGGCGGACTCTCTTTTCTGGCCTCCTCCTCTTC TTTTTCTCCTACTGCTGCTGGTACTGCCCGTAACGGCATTGGTTCTGGGA GGGGAAGTGGCCCCTCAACAGCGGGTTCGTCGTTGAATTCTTTATCGGAT GGGATGCCTCGGCCCCTGACGGGGGGTATGGGGAGGTACCACACTGTGGA TGAGAAGGTAAGGGATGGAAGTGAGGTTTAAGCAGTCTATGTTCATGTCA GAAAAGTAGGGAAGTGAAGAAAAGTTTGTGTATGATGTTGTAGATGACTG GGGGGC back to topprotein sequence of jgi.p|Nanoce1779_2|543094 >mRNA_5421-protein ID=mRNA_5421-protein|Name=jgi.p|Nanoce1779_2|543094|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp MSVARKYVDRQLSLTSVQSEIVMGSLNLVAAFGGLIAGKAADKFGRNRAI ALACLIFVTGSACMTMAWNFRMLLVGRIVTGLGVGCGFVIAPVYIAEITP PDIRGRMVSLTDVCINIGIVLGSVVGFLCQQTIRSDDAKWRVMLGIGIIP PIVILLFLRVLPESPRWLLLQGRVPEARHVLRKITGLDQEAEREVVAIEE AIQMERDVTTDWSEVLCPRHRAILLPVLMGLGLGFFQQASGSEAAVYYSP KILAEAGVSGTAQQSIGNIAICTFKFVGEIIAMLSMDRVGRKPLFVLSAL GSGCFLVVAGACFQFRLPPFLLASSLCLFMGFFSVGMGAITFVVASEIFP LPVRGKAMALAVFINRLLSGVVALTFLSLVDAVTYAKTFYLFAAFSFLST VFYGCFLPETKGKSLEDISILFEKESAEYEAHAHPQDQQQRRGGLSFLAS SSSFSPTAAGTARNGIGSGRGSGPSTAGSSLNSLSDGMPRPLTGGMGRYH TVDEKVRDGSEV* back to topmRNA from alignment at scaffold_13:390985..392690- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5421 ID=mRNA_5421|Name=jgi.p|Nanoce1779_2|543094|organism=Nannochloropsis oceanica|type=mRNA|length=1706bp|location=Sequence derived from alignment at scaffold_13:390985..392690- (Nannochloropsis oceanica) AGGCGGCGCGGAGAAAGAGCCGTCGGCTTGTGTATCTGTGCGGGTTCTGT
GCCTCGCTAACAAGTATTTTGCTTGGCTACGACGTGGGCGTCATGTCTGT
CGCACGTAAGTATGTGGACAGGCAACTCTCGCTCACCAGCGTGCAAAGCG
AGATAGTGATGGGATCCTTGAACCTTGTGGCGGCGTTTGGAGGCCTGATT
GCAGGCAAGGCAGCGGATAAATTCGGACGGAACCGCGCGATTGCATTGGC
GTGCCTCATCTTTGTGACAGGGAGTGCTTGCATGACAATGGCCTGGAATT
TTCGGATGTTGCTTGTAGGGCGAATCGTGACAGGTTTGGGGGTGGGATGT
GGTTTTGTCATTGCCCCGGTGTACATTGCTGAGATCACGCCACCGGATAT
CAGGGGAAGGATGGTGTCATTGACGGATGTTTGCATCAATATTGGGATTG
TCCTTGGCTCCGTAGTGGGATTTTTGTGTCAGCAGACGATTAGGTCGGAT
GATGCCAAGTGGCGGGTTATGCTCGGAATAGGCATTATCCCTCCCATTGT
CATTTTGCTGTTTCTGAGGGTTTTGCCCGAGTCCCCCCGGTGGCTCCTGC
TACAAGGCCGCGTCCCTGAAGCCCGGCACGTCCTAAGAAAGATCACTGGA
CTGGACCAGGAGGCTGAGCGCGAGGTTGTGGCCATCGAGGAGGCGATTCA
AATGGAACGAGACGTCACCACGGATTGGTCTGAGGTCCTCTGTCCCCGTC
ATCGCGCAATCCTCCTCCCCGTCCTCATGGGTCTCGGCCTTGGCTTCTTC
CAGCAGGCCTCCGGGTCCGAAGCCGCCGTGTATTATTCCCCCAAAATCCT
CGCGGAGGCCGGCGTGTCGGGCACAGCCCAACAGTCTATCGGGAATATTG
CGATTTGTACGTTTAAATTTGTGGGGGAGATAATAGCGATGCTCTCTATG
GATAGGGTGGGGCGTAAACCCTTGTTTGTCCTCTCGGCCTTGGGCTCTGG
CTGCTTCCTCGTCGTGGCGGGCGCCTGTTTCCAATTTCGACTCCCTCCGT
TCTTGCTTGCCTCGAGCCTGTGTTTGTTTATGGGGTTCTTCTCGGTGGGG
ATGGGCGCCATCACCTTTGTGGTTGCAAGCGAGATATTCCCGTTGCCTGT
CCGAGGGAAGGCCATGGCGTTGGCTGTGTTTATAAACCGGCTGTTGAGTG
GGGTGGTGGCGTTGACGTTTTTGAGTCTGGTGGACGCGGTGACGTACGCA
AAGACCTTTTATTTGTTTGCGGCGTTTTCGTTTCTGTCCACGGTGTTTTA
TGGGTGCTTTTTGCCAGAGACGAAAGGGAAGAGCTTGGAAGACATATCGA
TTTTGTTCGAGAAGGAGAGTGCAGAATACGAGGCGCATGCCCACCCTCAA
GACCAGCAGCAGCGGCGTGGCGGACTCTCTTTTCTGGCCTCCTCCTCTTC
TTTTTCTCCTACTGCTGCTGGTACTGCCCGTAACGGCATTGGTTCTGGGA
GGGGAAGTGGCCCCTCAACAGCGGGTTCGTCGTTGAATTCTTTATCGGAT
GGGATGCCTCGGCCCCTGACGGGGGGTATGGGGAGGTACCACACTGTGGA
TGAGAAGGTAAGGGATGGAAGTGAGGTTTAAGCAGTCTATGTTCATGTCA
GAAAAGTAGGGAAGTGAAGAAAAGTTTGTGTATGATGTTGTAGATGACTG
GGGGGC back to topCoding sequence (CDS) from alignment at scaffold_13:390985..392690- >mRNA_5421 ID=mRNA_5421|Name=jgi.p|Nanoce1779_2|543094|organism=Nannochloropsis oceanica|type=CDS|length=1539bp|location=Sequence derived from alignment at scaffold_13:390985..392690- (Nannochloropsis oceanica) ATGTCTGTCGCACGTAAGTATGTGGACAGGCAACTCTCGCTCACCAGCGT GCAAAGCGAGATAGTGATGGGATCCTTGAACCTTGTGGCGGCGTTTGGAG GCCTGATTGCAGGCAAGGCAGCGGATAAATTCGGACGGAACCGCGCGATT GCATTGGCGTGCCTCATCTTTGTGACAGGGAGTGCTTGCATGACAATGGC CTGGAATTTTCGGATGTTGCTTGTAGGGCGAATCGTGACAGGTTTGGGGG TGGGATGTGGTTTTGTCATTGCCCCGGTGTACATTGCTGAGATCACGCCA CCGGATATCAGGGGAAGGATGGTGTCATTGACGGATGTTTGCATCAATAT TGGGATTGTCCTTGGCTCCGTAGTGGGATTTTTGTGTCAGCAGACGATTA GGTCGGATGATGCCAAGTGGCGGGTTATGCTCGGAATAGGCATTATCCCT CCCATTGTCATTTTGCTGTTTCTGAGGGTTTTGCCCGAGTCCCCCCGGTG GCTCCTGCTACAAGGCCGCGTCCCTGAAGCCCGGCACGTCCTAAGAAAGA TCACTGGACTGGACCAGGAGGCTGAGCGCGAGGTTGTGGCCATCGAGGAG GCGATTCAAATGGAACGAGACGTCACCACGGATTGGTCTGAGGTCCTCTG TCCCCGTCATCGCGCAATCCTCCTCCCCGTCCTCATGGGTCTCGGCCTTG GCTTCTTCCAGCAGGCCTCCGGGTCCGAAGCCGCCGTGTATTATTCCCCC AAAATCCTCGCGGAGGCCGGCGTGTCGGGCACAGCCCAACAGTCTATCGG GAATATTGCGATTTGTACGTTTAAATTTGTGGGGGAGATAATAGCGATGC TCTCTATGGATAGGGTGGGGCGTAAACCCTTGTTTGTCCTCTCGGCCTTG GGCTCTGGCTGCTTCCTCGTCGTGGCGGGCGCCTGTTTCCAATTTCGACT CCCTCCGTTCTTGCTTGCCTCGAGCCTGTGTTTGTTTATGGGGTTCTTCT CGGTGGGGATGGGCGCCATCACCTTTGTGGTTGCAAGCGAGATATTCCCG TTGCCTGTCCGAGGGAAGGCCATGGCGTTGGCTGTGTTTATAAACCGGCT GTTGAGTGGGGTGGTGGCGTTGACGTTTTTGAGTCTGGTGGACGCGGTGA CGTACGCAAAGACCTTTTATTTGTTTGCGGCGTTTTCGTTTCTGTCCACG GTGTTTTATGGGTGCTTTTTGCCAGAGACGAAAGGGAAGAGCTTGGAAGA CATATCGATTTTGTTCGAGAAGGAGAGTGCAGAATACGAGGCGCATGCCC ACCCTCAAGACCAGCAGCAGCGGCGTGGCGGACTCTCTTTTCTGGCCTCC TCCTCTTCTTTTTCTCCTACTGCTGCTGGTACTGCCCGTAACGGCATTGG TTCTGGGAGGGGAAGTGGCCCCTCAACAGCGGGTTCGTCGTTGAATTCTT TATCGGATGGGATGCCTCGGCCCCTGACGGGGGGTATGGGGAGGTACCAC ACTGTGGATGAGAAGGTAAGGGATGGAAGTGAGGTTTAA back to top
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