jgi.p|Nanoce1779_2|543094, mRNA_5421 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|543094
Unique NamemRNA_5421
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1706
Alignment locationscaffold_13:390985..392690 -

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Properties
Property NameValue
TranscriptId543180
TrackFilteredModels2
ProteinId543094
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:390985..392690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|543094gene_5421Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|543094mRNA_5421-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5421CDS_5421Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5421 ID=mRNA_5421|Name=jgi.p|Nanoce1779_2|543094|organism=Nannochloropsis oceanica|type=mRNA|length=1706bp
AGGCGGCGCGGAGAAAGAGCCGTCGGCTTGTGTATCTGTGCGGGTTCTGT
GCCTCGCTAACAAGTATTTTGCTTGGCTACGACGTGGGCGTCATGTCTGT
CGCACGTAAGTATGTGGACAGGCAACTCTCGCTCACCAGCGTGCAAAGCG
AGATAGTGATGGGATCCTTGAACCTTGTGGCGGCGTTTGGAGGCCTGATT
GCAGGCAAGGCAGCGGATAAATTCGGACGGAACCGCGCGATTGCATTGGC
GTGCCTCATCTTTGTGACAGGGAGTGCTTGCATGACAATGGCCTGGAATT
TTCGGATGTTGCTTGTAGGGCGAATCGTGACAGGTTTGGGGGTGGGATGT
GGTTTTGTCATTGCCCCGGTGTACATTGCTGAGATCACGCCACCGGATAT
CAGGGGAAGGATGGTGTCATTGACGGATGTTTGCATCAATATTGGGATTG
TCCTTGGCTCCGTAGTGGGATTTTTGTGTCAGCAGACGATTAGGTCGGAT
GATGCCAAGTGGCGGGTTATGCTCGGAATAGGCATTATCCCTCCCATTGT
CATTTTGCTGTTTCTGAGGGTTTTGCCCGAGTCCCCCCGGTGGCTCCTGC
TACAAGGCCGCGTCCCTGAAGCCCGGCACGTCCTAAGAAAGATCACTGGA
CTGGACCAGGAGGCTGAGCGCGAGGTTGTGGCCATCGAGGAGGCGATTCA
AATGGAACGAGACGTCACCACGGATTGGTCTGAGGTCCTCTGTCCCCGTC
ATCGCGCAATCCTCCTCCCCGTCCTCATGGGTCTCGGCCTTGGCTTCTTC
CAGCAGGCCTCCGGGTCCGAAGCCGCCGTGTATTATTCCCCCAAAATCCT
CGCGGAGGCCGGCGTGTCGGGCACAGCCCAACAGTCTATCGGGAATATTG
CGATTTGTACGTTTAAATTTGTGGGGGAGATAATAGCGATGCTCTCTATG
GATAGGGTGGGGCGTAAACCCTTGTTTGTCCTCTCGGCCTTGGGCTCTGG
CTGCTTCCTCGTCGTGGCGGGCGCCTGTTTCCAATTTCGACTCCCTCCGT
TCTTGCTTGCCTCGAGCCTGTGTTTGTTTATGGGGTTCTTCTCGGTGGGG
ATGGGCGCCATCACCTTTGTGGTTGCAAGCGAGATATTCCCGTTGCCTGT
CCGAGGGAAGGCCATGGCGTTGGCTGTGTTTATAAACCGGCTGTTGAGTG
GGGTGGTGGCGTTGACGTTTTTGAGTCTGGTGGACGCGGTGACGTACGCA
AAGACCTTTTATTTGTTTGCGGCGTTTTCGTTTCTGTCCACGGTGTTTTA
TGGGTGCTTTTTGCCAGAGACGAAAGGGAAGAGCTTGGAAGACATATCGA
TTTTGTTCGAGAAGGAGAGTGCAGAATACGAGGCGCATGCCCACCCTCAA
GACCAGCAGCAGCGGCGTGGCGGACTCTCTTTTCTGGCCTCCTCCTCTTC
TTTTTCTCCTACTGCTGCTGGTACTGCCCGTAACGGCATTGGTTCTGGGA
GGGGAAGTGGCCCCTCAACAGCGGGTTCGTCGTTGAATTCTTTATCGGAT
GGGATGCCTCGGCCCCTGACGGGGGGTATGGGGAGGTACCACACTGTGGA
TGAGAAGGTAAGGGATGGAAGTGAGGTTTAAGCAGTCTATGTTCATGTCA
GAAAAGTAGGGAAGTGAAGAAAAGTTTGTGTATGATGTTGTAGATGACTG
GGGGGC
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protein sequence of jgi.p|Nanoce1779_2|543094

>mRNA_5421-protein ID=mRNA_5421-protein|Name=jgi.p|Nanoce1779_2|543094|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MSVARKYVDRQLSLTSVQSEIVMGSLNLVAAFGGLIAGKAADKFGRNRAI
ALACLIFVTGSACMTMAWNFRMLLVGRIVTGLGVGCGFVIAPVYIAEITP
PDIRGRMVSLTDVCINIGIVLGSVVGFLCQQTIRSDDAKWRVMLGIGIIP
PIVILLFLRVLPESPRWLLLQGRVPEARHVLRKITGLDQEAEREVVAIEE
AIQMERDVTTDWSEVLCPRHRAILLPVLMGLGLGFFQQASGSEAAVYYSP
KILAEAGVSGTAQQSIGNIAICTFKFVGEIIAMLSMDRVGRKPLFVLSAL
GSGCFLVVAGACFQFRLPPFLLASSLCLFMGFFSVGMGAITFVVASEIFP
LPVRGKAMALAVFINRLLSGVVALTFLSLVDAVTYAKTFYLFAAFSFLST
VFYGCFLPETKGKSLEDISILFEKESAEYEAHAHPQDQQQRRGGLSFLAS
SSSFSPTAAGTARNGIGSGRGSGPSTAGSSLNSLSDGMPRPLTGGMGRYH
TVDEKVRDGSEV*
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mRNA from alignment at scaffold_13:390985..392690-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5421 ID=mRNA_5421|Name=jgi.p|Nanoce1779_2|543094|organism=Nannochloropsis oceanica|type=mRNA|length=1706bp|location=Sequence derived from alignment at scaffold_13:390985..392690- (Nannochloropsis oceanica)
AGGCGGCGCGGAGAAAGAGCCGTCGGCTTGTGTATCTGTGCGGGTTCTGT GCCTCGCTAACAAGTATTTTGCTTGGCTACGACGTGGGCGTCATGTCTGT CGCACGTAAGTATGTGGACAGGCAACTCTCGCTCACCAGCGTGCAAAGCG AGATAGTGATGGGATCCTTGAACCTTGTGGCGGCGTTTGGAGGCCTGATT GCAGGCAAGGCAGCGGATAAATTCGGACGGAACCGCGCGATTGCATTGGC GTGCCTCATCTTTGTGACAGGGAGTGCTTGCATGACAATGGCCTGGAATT TTCGGATGTTGCTTGTAGGGCGAATCGTGACAGGTTTGGGGGTGGGATGT GGTTTTGTCATTGCCCCGGTGTACATTGCTGAGATCACGCCACCGGATAT CAGGGGAAGGATGGTGTCATTGACGGATGTTTGCATCAATATTGGGATTG TCCTTGGCTCCGTAGTGGGATTTTTGTGTCAGCAGACGATTAGGTCGGAT GATGCCAAGTGGCGGGTTATGCTCGGAATAGGCATTATCCCTCCCATTGT CATTTTGCTGTTTCTGAGGGTTTTGCCCGAGTCCCCCCGGTGGCTCCTGC TACAAGGCCGCGTCCCTGAAGCCCGGCACGTCCTAAGAAAGATCACTGGA CTGGACCAGGAGGCTGAGCGCGAGGTTGTGGCCATCGAGGAGGCGATTCA AATGGAACGAGACGTCACCACGGATTGGTCTGAGGTCCTCTGTCCCCGTC ATCGCGCAATCCTCCTCCCCGTCCTCATGGGTCTCGGCCTTGGCTTCTTC CAGCAGGCCTCCGGGTCCGAAGCCGCCGTGTATTATTCCCCCAAAATCCT CGCGGAGGCCGGCGTGTCGGGCACAGCCCAACAGTCTATCGGGAATATTG CGATTTGTACGTTTAAATTTGTGGGGGAGATAATAGCGATGCTCTCTATG GATAGGGTGGGGCGTAAACCCTTGTTTGTCCTCTCGGCCTTGGGCTCTGG CTGCTTCCTCGTCGTGGCGGGCGCCTGTTTCCAATTTCGACTCCCTCCGT TCTTGCTTGCCTCGAGCCTGTGTTTGTTTATGGGGTTCTTCTCGGTGGGG ATGGGCGCCATCACCTTTGTGGTTGCAAGCGAGATATTCCCGTTGCCTGT CCGAGGGAAGGCCATGGCGTTGGCTGTGTTTATAAACCGGCTGTTGAGTG GGGTGGTGGCGTTGACGTTTTTGAGTCTGGTGGACGCGGTGACGTACGCA AAGACCTTTTATTTGTTTGCGGCGTTTTCGTTTCTGTCCACGGTGTTTTA TGGGTGCTTTTTGCCAGAGACGAAAGGGAAGAGCTTGGAAGACATATCGA TTTTGTTCGAGAAGGAGAGTGCAGAATACGAGGCGCATGCCCACCCTCAA GACCAGCAGCAGCGGCGTGGCGGACTCTCTTTTCTGGCCTCCTCCTCTTC TTTTTCTCCTACTGCTGCTGGTACTGCCCGTAACGGCATTGGTTCTGGGA GGGGAAGTGGCCCCTCAACAGCGGGTTCGTCGTTGAATTCTTTATCGGAT GGGATGCCTCGGCCCCTGACGGGGGGTATGGGGAGGTACCACACTGTGGA TGAGAAGGTAAGGGATGGAAGTGAGGTTTAAGCAGTCTATGTTCATGTCA GAAAAGTAGGGAAGTGAAGAAAAGTTTGTGTATGATGTTGTAGATGACTG GGGGGC
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Coding sequence (CDS) from alignment at scaffold_13:390985..392690-

>mRNA_5421 ID=mRNA_5421|Name=jgi.p|Nanoce1779_2|543094|organism=Nannochloropsis oceanica|type=CDS|length=1539bp|location=Sequence derived from alignment at scaffold_13:390985..392690- (Nannochloropsis oceanica)
ATGTCTGTCGCACGTAAGTATGTGGACAGGCAACTCTCGCTCACCAGCGT
GCAAAGCGAGATAGTGATGGGATCCTTGAACCTTGTGGCGGCGTTTGGAG
GCCTGATTGCAGGCAAGGCAGCGGATAAATTCGGACGGAACCGCGCGATT
GCATTGGCGTGCCTCATCTTTGTGACAGGGAGTGCTTGCATGACAATGGC
CTGGAATTTTCGGATGTTGCTTGTAGGGCGAATCGTGACAGGTTTGGGGG
TGGGATGTGGTTTTGTCATTGCCCCGGTGTACATTGCTGAGATCACGCCA
CCGGATATCAGGGGAAGGATGGTGTCATTGACGGATGTTTGCATCAATAT
TGGGATTGTCCTTGGCTCCGTAGTGGGATTTTTGTGTCAGCAGACGATTA
GGTCGGATGATGCCAAGTGGCGGGTTATGCTCGGAATAGGCATTATCCCT
CCCATTGTCATTTTGCTGTTTCTGAGGGTTTTGCCCGAGTCCCCCCGGTG
GCTCCTGCTACAAGGCCGCGTCCCTGAAGCCCGGCACGTCCTAAGAAAGA
TCACTGGACTGGACCAGGAGGCTGAGCGCGAGGTTGTGGCCATCGAGGAG
GCGATTCAAATGGAACGAGACGTCACCACGGATTGGTCTGAGGTCCTCTG
TCCCCGTCATCGCGCAATCCTCCTCCCCGTCCTCATGGGTCTCGGCCTTG
GCTTCTTCCAGCAGGCCTCCGGGTCCGAAGCCGCCGTGTATTATTCCCCC
AAAATCCTCGCGGAGGCCGGCGTGTCGGGCACAGCCCAACAGTCTATCGG
GAATATTGCGATTTGTACGTTTAAATTTGTGGGGGAGATAATAGCGATGC
TCTCTATGGATAGGGTGGGGCGTAAACCCTTGTTTGTCCTCTCGGCCTTG
GGCTCTGGCTGCTTCCTCGTCGTGGCGGGCGCCTGTTTCCAATTTCGACT
CCCTCCGTTCTTGCTTGCCTCGAGCCTGTGTTTGTTTATGGGGTTCTTCT
CGGTGGGGATGGGCGCCATCACCTTTGTGGTTGCAAGCGAGATATTCCCG
TTGCCTGTCCGAGGGAAGGCCATGGCGTTGGCTGTGTTTATAAACCGGCT
GTTGAGTGGGGTGGTGGCGTTGACGTTTTTGAGTCTGGTGGACGCGGTGA
CGTACGCAAAGACCTTTTATTTGTTTGCGGCGTTTTCGTTTCTGTCCACG
GTGTTTTATGGGTGCTTTTTGCCAGAGACGAAAGGGAAGAGCTTGGAAGA
CATATCGATTTTGTTCGAGAAGGAGAGTGCAGAATACGAGGCGCATGCCC
ACCCTCAAGACCAGCAGCAGCGGCGTGGCGGACTCTCTTTTCTGGCCTCC
TCCTCTTCTTTTTCTCCTACTGCTGCTGGTACTGCCCGTAACGGCATTGG
TTCTGGGAGGGGAAGTGGCCCCTCAACAGCGGGTTCGTCGTTGAATTCTT
TATCGGATGGGATGCCTCGGCCCCTGACGGGGGGTATGGGGAGGTACCAC
ACTGTGGATGAGAAGGTAAGGGATGGAAGTGAGGTTTAA
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Synonyms
Publications